Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE12G0495 Ceratophyllum demersum HOM05D004325 ORTHO05D005470 3.5e-74 281.6 146 100.0
CDE01G0033 Ceratophyllum demersum HOM05D004325 ORTHO05D005470 5.8e-61 237.7 126 96.8
Hund03133 Selenicereus undatus HOM05D004325 ORTHO05D005470 2.9e-52 208.8 125 82.4
TAR362G0217 Trochodendron aralioides HOM05D004325 ORTHO05D005470 6.4e-52 207.6 142 76.1
MBI19_g03261_MAGBIO Magnolia biondii HOM05D004325 ORTHO05D005470 1.4e-51 206.5 121 86.8
Sabra08G0078100 Salix brachista HOM05D004325 ORTHO05D005470 1.9e-51 206.1 125 82.4
Potri.008G103400 Populus trichocarpa HOM05D004325 ORTHO05D005470 2.4e-51 205.7 125 81.6
Hund11985 Selenicereus undatus HOM05D004325 ORTHO05D005470 2.4e-51 205.7 125 81.6
Glyma.09G034400 Glycine max HOM05D004325 ORTHO05D005470 4.2e-51 204.9 125 81.6
Dinv44270 Davidia involucrata HOM05D004325 ORTHO05D005470 5.5e-51 204.5 125 83.2
TAR633G1272 Trochodendron aralioides HOM05D004325 ORTHO05D005470 9.3e-51 203.8 127 82.7
TPR.G30807 Trifolium pratense HOM05D004325 ORTHO05D005470 1.2e-50 203.4 125 81.6
CANSAT78G0850 Cannabis sativa HOM05D004325 ORTHO05D005470 1.6e-50 203.0 133 79.7
Lj3A833G34 Lonicera japonica HOM05D004325 ORTHO05D005470 1.6e-50 203.0 119 84.9
Glyma.15G139100 Glycine max HOM05D004325 ORTHO05D005470 2.1e-50 202.6 124 81.5
PSO421G0271 Papaver somniferum HOM05D004325 ORTHO05D005470 2.1e-50 202.6 125 81.6
Medtr2g033830 Medicago truncatula HOM05D004325 ORTHO05D005470 2.7e-50 202.2 125 80.8
PSO832G3679 Papaver somniferum HOM05D004325 ORTHO05D005470 2.7e-50 202.2 125 81.6
Psat1g162400 Pisum sativum HOM05D004325 ORTHO05D005470 6.0e-50 201.1 125 80.0
Potri.010G147600 Populus trichocarpa HOM05D004325 ORTHO05D005470 6.0e-50 201.1 132 79.5
Actinidia13352 Actinidia chinensis HOM05D004325 ORTHO05D005470 7.9e-50 200.7 125 80.0
EL10Ac3g05527 Beta vulgaris HOM05D004325 ORTHO05D005470 7.9e-50 200.7 125 79.2
Cpa.g.sc9.38 Carica papaya HOM05D004325 ORTHO05D005470 7.9e-50 200.7 132 78.8
Cc03_g00680 Coffea canephora HOM05D004325 ORTHO05D005470 7.9e-50 200.7 122 82.0
Hma1.2p1_0013F.1_g008360 Hydrangea macrophylla HOM05D004325 ORTHO05D005470 7.9e-50 200.7 124 82.3
Os12g0562900 Oryza sativa ssp. japonica HOM05D004325 ORTHO05D005470 7.9e-50 200.7 121 81.8
CSS0027180 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D005470 1.0e-49 200.3 125 80.0
Ca_00969_v3 Cicer arietinum L. HOM05D004325 ORTHO05D005470 1.0e-49 200.3 125 79.2
PGR004G2019 Punica granatum HOM05D004325 ORTHO05D005470 1.0e-49 200.3 140 75.7
SalBow5G2618 Salvia bowleyana HOM05D004325 ORTHO05D005470 1.0e-49 200.3 141 73.8
PGSC0003DMG400027209 Solanum tuberosum HOM05D004325 ORTHO05D005470 1.0e-49 200.3 124 81.5
COL.COLO4_34588 Corchorus olitorius HOM05D004325 ORTHO05D005470 1.3e-49 199.9 119 82.4
Duzib151G0878 Durio zibethinus HOM05D004325 ORTHO05D005470 1.3e-49 199.9 119 82.4
Sc25g0003210 Simmondsia chinensis HOM05D004325 ORTHO05D005470 1.3e-49 199.9 125 78.4
arahy.Tifrunner.gnm1.ann1.H88EK8 Arachis hypogaea HOM05D004325 ORTHO05D005470 1.8e-49 199.5 132 78.8
arahy.Tifrunner.gnm1.ann1.RG9184 Arachis hypogaea HOM05D004325 ORTHO05D005470 1.8e-49 199.5 132 78.8
Cfa015290 Carpinus fangiana HOM05D004325 ORTHO05D005470 1.8e-49 199.5 125 80.8
Lj6g0013793 Lotus japonicus HOM05D004325 ORTHO05D005470 1.8e-49 199.5 125 78.4
Lalb_Chr12g0200831 Lupinus albus HOM05D004325 ORTHO05D005470 1.8e-49 199.5 133 78.2
Thecc.04G303800 Theobroma cacao HOM05D004325 ORTHO05D005470 1.8e-49 199.5 126 80.2
Aa31LG11G8140 Aethionema arabicum HOM05D004325 ORTHO05D005470 2.3e-49 199.1 125 79.2
Haze_01324 Corylus avellana HOM05D004325 ORTHO05D005470 2.3e-49 199.1 125 79.2
Eucgr.E02007 Eucalyptus grandis HOM05D004325 ORTHO05D005470 2.3e-49 199.1 131 79.4
PSO063G1209 Papaver somniferum HOM05D004325 ORTHO05D005470 2.3e-49 199.1 125 80.8
arahy.Tifrunner.gnm1.ann1.NK7FC1 Arachis hypogaea HOM05D004325 ORTHO05D005470 3.0e-49 198.7 132 78.0
Duzib052G1161 Durio zibethinus HOM05D004325 ORTHO05D005470 3.0e-49 198.7 119 82.4
Solyc05g053390.4 Solanum lycopersicum HOM05D004325 ORTHO05D005470 3.0e-49 198.7 124 80.6
Sopen05g031900 Solanum pennellii HOM05D004325 ORTHO05D005470 3.0e-49 198.7 124 80.6
MSTRG.24825 Avicennia marina HOM05D004325 ORTHO05D005470 3.9e-49 198.4 123 80.5
Manes.03G206300 Manihot esculenta HOM05D004325 ORTHO05D005470 3.9e-49 198.4 128 79.7
PSO724G0368 Papaver somniferum HOM05D004325 ORTHO05D005470 3.9e-49 198.4 125 80.8
Peaxi162Scf00228g00059 Petunia axillaris HOM05D004325 ORTHO05D005470 3.9e-49 198.4 125 80.0
Prupe.1G115000 Prunus persica HOM05D004325 ORTHO05D005470 3.9e-49 198.4 125 79.2
ECA233G2476 Erigeron canadensis HOM05D004325 ORTHO05D005470 5.1e-49 198.0 121 81.8
unitig_0.g2580 Utricularia gibba HOM05D004325 ORTHO05D005470 5.1e-49 198.0 124 79.0
VMungo0540G0568 Vigna mungo HOM05D004325 ORTHO05D005470 5.1e-49 198.0 123 80.5
Aqoxy3G01635 Aquilegia oxysepala HOM05D004325 ORTHO05D005470 6.7e-49 197.6 125 79.2
Gohir.A01G034900 Gossypium hirsutum HOM05D004325 ORTHO05D005470 6.7e-49 197.6 119 81.5
Phvul.006G119000 Phaseolus vulgaris HOM05D004325 ORTHO05D005470 8.7e-49 197.2 122 79.5
Atru.chr4.3046 Acer truncatum HOM05D004325 ORTHO05D005470 1.1e-48 196.8 119 81.5
MD13G1150800 Malus domestica HOM05D004325 ORTHO05D005470 1.1e-48 196.8 125 78.4
MD16G1151300 Malus domestica HOM05D004325 ORTHO05D005470 1.1e-48 196.8 125 78.4
Nitab4.5_0004165g0020 Nicotiana tabacum HOM05D004325 ORTHO05D005470 1.1e-48 196.8 124 78.2
AUR62016229 Chenopodium quinoa HOM05D004325 ORTHO05D005470 1.5e-48 196.4 125 77.6
THA.LOC104827099 Tarenaya hassleriana HOM05D004325 ORTHO05D005470 1.5e-48 196.4 133 76.7
Ah.13g071390 Amaranthus hybridus HOM05D004325 ORTHO05D005470 2.5e-48 195.7 125 79.2
AUR62039261 Chenopodium quinoa HOM05D004325 ORTHO05D005470 2.5e-48 195.7 125 77.6
Migut.N00036 Erythranthe guttata HOM05D004325 ORTHO05D005470 2.5e-48 195.7 124 78.2
Nitab4.5_0000647g0250 Nicotiana tabacum HOM05D004325 ORTHO05D005470 2.5e-48 195.7 124 78.2
CSS0047955 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D005470 4.3e-48 194.9 123 79.7
Gohir.D01G023556 Gossypium hirsutum HOM05D004325 ORTHO05D005470 4.3e-48 194.9 121 80.2
Gorai.002G030800 Gossypium raimondii HOM05D004325 ORTHO05D005470 4.3e-48 194.9 121 80.2
AT5G49510 Arabidopsis thaliana HOM05D004325 ORTHO05D005470 5.6e-48 194.5 125 77.6
Ciclev10005911m.g Citrus clementina HOM05D004325 ORTHO05D005470 5.6e-48 194.5 142 72.5
CARHR287830 Cardamine hirsuta HOM05D004325 ORTHO05D005470 7.4e-48 194.1 125 76.8
Zm00001eb136920 Zea mays HOM05D004325 ORTHO05D005470 7.4e-48 194.1 121 78.5
AL8G23260 Arabidopsis lyrata HOM05D004325 ORTHO05D005470 1.3e-47 193.4 125 76.8
Carub.0008s0936 Capsella rubella HOM05D004325 ORTHO05D005470 1.3e-47 193.4 125 76.8
Rhsim02G0002800 Rhododendron simsii HOM05D004325 ORTHO05D005470 1.3e-47 193.4 125 77.6
TWI73G0086 Tripterygium wilfordii HOM05D004325 ORTHO05D005470 1.3e-47 193.4 125 76.8
ClCG05G006650 Citrullus lanatus HOM05D004325 ORTHO05D005470 2.1e-47 192.6 123 78.9
HanXRQChr17g0569361 Helianthus annuus HOM05D004325 ORTHO05D005470 2.1e-47 192.6 126 77.8
Sed0024233 Sechium edule HOM05D004325 ORTHO05D005470 2.1e-47 192.6 127 76.4
Thhalv10004957m.g Eutrema salsugineum HOM05D004325 ORTHO05D005470 2.8e-47 192.2 125 76.8
CsaV3_3G015280 Cucumis sativus L. HOM05D004325 ORTHO05D005470 3.7e-47 191.8 140 72.1
Sp2g19810 Schrenkiella parvula HOM05D004325 ORTHO05D005470 3.7e-47 191.8 125 76.0
SpUn0021_0040 Schrenkiella parvula HOM05D004325 ORTHO05D005470 3.7e-47 191.8 125 76.0
Zm00001eb028520 Zea mays HOM05D004325 ORTHO05D005470 3.7e-47 191.8 121 77.7
ATR0693G272 Amborella trichopoda HOM05D004325 ORTHO05D005470 4.8e-47 191.4 125 76.0
Nitab4.5_0000177g0050 Nicotiana tabacum HOM05D004325 ORTHO05D005470 6.2e-47 191.0 140 71.4
BcaB04g19615 Brassica carinata HOM05D004325 ORTHO05D005470 8.2e-47 190.7 125 75.2
MELO3C006723.2 Cucumis melo HOM05D004325 ORTHO05D005470 8.2e-47 190.7 122 78.7
SGA_v2.0_scaffold528G52737 Striga asiatica HOM05D004325 ORTHO05D005470 8.2e-47 190.7 147 69.4
BcaC04g23736 Brassica carinata HOM05D004325 ORTHO05D005470 1.1e-46 190.3 119 79.0
A09p04850 Brassica napus HOM05D004325 ORTHO05D005470 1.1e-46 190.3 119 79.0
C09p05230 Brassica napus HOM05D004325 ORTHO05D005470 1.1e-46 190.3 119 79.0
BraA09t36122Z Brassica rapa HOM05D004325 ORTHO05D005470 1.1e-46 190.3 119 79.0
Lsat_1_v5_gn_1_117981 Lactuca sativa HOM05D004325 ORTHO05D005470 1.1e-46 190.3 124 78.2
Sed0016650 Sechium edule HOM05D004325 ORTHO05D005470 1.1e-46 190.3 127 74.8
HPP92_017247 Vanilla planifolia HOM05D004325 ORTHO05D005470 1.1e-46 190.3 120 80.0
RcHm_v2.0_Chr4g0425791 Rosa chinensis HOM05D004325 ORTHO05D005470 2.4e-46 189.1 121 76.9
A06p38330 Brassica napus HOM05D004325 ORTHO05D005470 5.3e-46 188.0 125 74.4
C07p39920 Brassica napus HOM05D004325 ORTHO05D005470 5.3e-46 188.0 125 74.4
BolC7t44524H Brassica oleracea HOM05D004325 ORTHO05D005470 5.3e-46 188.0 125 74.4
BraA06t26747Z Brassica rapa HOM05D004325 ORTHO05D005470 5.3e-46 188.0 125 74.4
Nitab4.5_0000891g0010 Nicotiana tabacum HOM05D004325 ORTHO05D005470 5.3e-46 188.0 140 70.7
FvH4_4g20250 Fragaria vesca HOM05D004325 ORTHO05D005470 6.9e-46 187.6 131 73.3
THA.LOC104802708 Tarenaya hassleriana HOM05D004325 ORTHO05D005470 1.5e-45 186.4 126 73.0
Eucgr.D01575 Eucalyptus grandis HOM05D004325 ORTHO05D005470 2.0e-45 186.0 131 74.8
HPP92_027563 Vanilla planifolia HOM05D004325 ORTHO05D005470 5.8e-45 184.5 129 72.9
MSTRG.3849 Avicennia marina HOM05D004325 ORTHO05D005470 2.9e-44 182.2 144 65.3
Sabra10G0113800 Salix brachista HOM05D004325 ORTHO05D005470 1.9e-43 179.5 168 60.1
vmacro15176 Vaccinium macrocarpon HOM05D004325 ORTHO05D005470 4.2e-43 178.3 167 59.9
SEGI_09014 Sequoiadendron giganteum HOM05D004325 ORTHO05D005470 3.0e-41 172.2 125 68.8
FAN12G3971 Fragaria x ananassa HOM05D004325 ORTHO05D005470 8.7e-41 170.6 164 58.5
Mapoly0057s0039 Marchantia polymorpha HOM05D004325 ORTHO05D005470 9.7e-40 167.2 123 66.7
SMO116G0307 Selaginella moellendorffii HOM05D004325 ORTHO05D005470 1.6e-39 166.4 127 65.4
FAN07G0536 Fragaria x ananassa HOM05D004325 ORTHO05D005470 4.8e-39 164.9 173 54.9
TWI09G1034 Tripterygium wilfordii HOM05D004325 ORTHO05D005470 8.2e-39 164.1 125 69.6
BolC9t53449H Brassica oleracea HOM05D004325 ORTHO05D005470 1.8e-38 162.9 181 51.9
Actinidia18462 Actinidia chinensis HOM05D004325 ORTHO05D005470 5.3e-38 161.4 119 71.4
Nn3g21742 Nelumbo nucifera HOM05D004325 ORTHO05D005470 3.4e-37 158.7 125 68.8
Pp3c8_18130 Physcomitrium patens HOM05D004325 ORTHO05D005470 4.2e-35 151.8 126 63.5
HPP92_017255 Vanilla planifolia HOM05D004325 ORTHO05D005470 1.0e-33 147.1 88 84.1
Eucgr.E01999 Eucalyptus grandis HOM05D004325 ORTHO05D005470 2.3e-33 146.0 131 64.1
AagrBONN_evm.TU.Sc2ySwM_344.4436 Anthoceros agrestis HOM05D004325 ORTHO05D005470 2.5e-32 142.5 126 55.6
TPR.G28959 Trifolium pratense HOM05D004325 ORTHO05D005470 2.2e-31 139.4 84 81.0
CAN.G945.3 Capsicum annuum HOM05D004325 ORTHO05D005470 8.2e-31 137.5 85 78.8
GSVIVG01034969001 Vitis vinifera HOM05D004325 ORTHO05D005470 1.5e-29 133.3 76 84.2
Dinv15146 Davidia involucrata HOM05D004325 ORTHO05D005470 2.6e-29 132.5 98 71.4
Oeu001162.1 Olea europaea HOM05D004325 ORTHO05D005470 2.2e-28 129.4 93 73.1
Sopen01g024490 Solanum pennellii HOM05D004325 ORTHO05D005470 2.2e-28 129.4 76 82.9
DCAR_026989 Daucus carota HOM05D004325 ORTHO05D005470 2.9e-28 129.0 92 76.1
QL06p012730 Quercus lobata HOM05D004325 ORTHO05D005470 1.4e-27 126.7 84 76.2
CiPaw.01G136700 Carya illinoinensis HOM05D004325 ORTHO05D005470 9.4e-27 124.0 76 80.3
Eucgr.E01982 Eucalyptus grandis HOM05D004325 ORTHO05D005470 4.7e-26 121.7 76 81.6
CiPaw.02G073600 Carya illinoinensis HOM05D004325 ORTHO05D005470 3.0e-25 119.0 142 50.7
Eucgr.D01598 Eucalyptus grandis HOM05D004325 ORTHO05D005470 1.5e-24 116.7 93 68.8
Lalb_Chr13g0298551 Lupinus albus HOM05D004325 ORTHO05D005470 3.3e-24 115.5 76 75.0
Eucgr.D01586 Eucalyptus grandis HOM05D004325 ORTHO05D005470 2.2e-23 112.8 67 80.6
PRCOL_00000812 Prasinoderma coloniale HOM05D004325 ORTHO05D005470 1.4e-22 110.2 117 47.0
Glyma.07G238200 Glycine max HOM05D004325 ORTHO05D005470 1.9e-19 99.8 65 73.8
MCO08G322 Micromonas commoda HOM05D004325 ORTHO05D005470 6.7e-17 91.3 114 40.4
Cre06.g261650 Chlamydomonas reinhardtii HOM05D004325 ORTHO05D005470 3.3e-16 89.0 126 37.3
Haze_26161 Corylus avellana HOM05D004325 ORTHO05D005470 9.1e-14 80.9 114 39.5
MBI14_g36884_MAGBIO Magnolia biondii HOM05D004325 ORTHO05D005470 3.5e-13 79.0 76 59.2
Eucgr.D01580 Eucalyptus grandis HOM05D004325 ORTHO05D005470 2.2e-12 76.3 56 67.9
QL06p012738 Quercus lobata HOM05D004325 ORTHO05D005470 6.5e-12 74.7 47 78.7
Glyma.17G035301 Glycine max HOM05D004325 ORTHO05D005470 8.5e-12 74.3 65 58.5
Eucgr.D01581 Eucalyptus grandis HOM05D004325 ORTHO05D005470 1.1e-11 73.9 46 76.1
Solyc01g058597.1 Solanum lycopersicum HOM05D004325 ORTHO05D005470 1.9e-11 73.2 46 76.1
TPR.G26018 Trifolium pratense HOM05D004325 ORTHO05D049290 3.0e-09 65.9 59 59.3
CBR_g12436 Chara braunii HOM05D004325 ORTHO05D005470 9.7e-08 60.8 37 67.6


User provided reference genes

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