Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE12G0489 Ceratophyllum demersum HOM05D005265 ORTHO05D006326 1.1e-66 256.5 136 100.0
CDE01G0641 Ceratophyllum demersum HOM05D005265 ORTHO05D006326 6.2e-65 250.8 136 97.8
MBI02_g44634_MAGBIO Magnolia biondii HOM05D005265 ORTHO05D006326 3.5e-52 208.4 136 79.4
Aqoxy4G00026 Aquilegia oxysepala HOM05D005265 ORTHO05D006326 6.0e-52 207.6 136 77.9
MBI02_g40641_MAGBIO Magnolia biondii HOM05D005265 ORTHO05D006326 6.0e-52 207.6 136 79.4
DCAR_004804 Daucus carota HOM05D005265 ORTHO05D006326 1.3e-51 206.5 130 82.3
Migut.M01877 Erythranthe guttata HOM05D005265 ORTHO05D006326 3.0e-51 205.3 130 82.3
MD00G1109700 Malus domestica HOM05D005265 ORTHO05D006326 1.5e-50 203.0 130 77.7
Haze_05746 Corylus avellana HOM05D005265 ORTHO05D006326 3.3e-50 201.8 130 79.2
SalBow8G5437 Salvia bowleyana HOM05D005265 ORTHO05D006326 4.3e-50 201.4 129 79.8
Cpa.g.sc17.68 Carica papaya HOM05D005265 ORTHO05D006326 5.6e-50 201.1 129 77.5
DCAR_004805 Daucus carota HOM05D005265 ORTHO05D006326 5.6e-50 201.1 130 80.8
PGR083G1323 Punica granatum HOM05D005265 ORTHO05D006326 5.6e-50 201.1 129 78.3
CANSAT35G0137 Cannabis sativa HOM05D005265 ORTHO05D006326 1.3e-49 199.9 129 77.5
Dinv32199 Davidia involucrata HOM05D005265 ORTHO05D006326 1.3e-49 199.9 130 78.5
Oeu040090.1 Olea europaea HOM05D005265 ORTHO05D006326 1.3e-49 199.9 130 79.2
PSO541G2745 Papaver somniferum HOM05D005265 ORTHO05D006326 1.3e-49 199.9 130 78.5
PSO675G1042 Papaver somniferum HOM05D005265 ORTHO05D006326 1.3e-49 199.9 130 78.5
Dinv15893 Davidia involucrata HOM05D005265 ORTHO05D006326 1.6e-49 199.5 130 77.7
TAR624G1044 Trochodendron aralioides HOM05D005265 ORTHO05D006326 1.6e-49 199.5 129 77.5
GSVIVG01021584001 Vitis vinifera HOM05D005265 ORTHO05D006326 1.6e-49 199.5 129 76.7
Eucgr.D00234 Eucalyptus grandis HOM05D005265 ORTHO05D006326 2.1e-49 199.1 130 78.5
Duzib132G0868 Durio zibethinus HOM05D005265 ORTHO05D006326 2.8e-49 198.7 129 76.0
Thecc.02G010800 Theobroma cacao HOM05D005265 ORTHO05D006326 3.6e-49 198.4 129 76.7
unitig_61.g26080 Utricularia gibba HOM05D005265 ORTHO05D006326 3.6e-49 198.4 129 80.6
Manes.14G134800 Manihot esculenta HOM05D005265 ORTHO05D006326 4.8e-49 198.0 129 75.2
BcaC01g00188 Brassica carinata HOM05D005265 ORTHO05D006326 6.2e-49 197.6 130 78.5
A08p24490 Brassica napus HOM05D005265 ORTHO05D006326 6.2e-49 197.6 130 78.5
C03p76720 Brassica napus HOM05D005265 ORTHO05D006326 6.2e-49 197.6 130 78.5
BraA08t34405Z Brassica rapa HOM05D005265 ORTHO05D006326 6.2e-49 197.6 130 78.5
ClCG01G025030 Citrullus lanatus HOM05D005265 ORTHO05D006326 6.2e-49 197.6 130 77.7
Nitab4.5_0002991g0030 Nicotiana tabacum HOM05D005265 ORTHO05D006326 6.2e-49 197.6 130 78.5
Prupe.4G088200 Prunus persica HOM05D005265 ORTHO05D006326 6.2e-49 197.6 130 76.2
BolC3t19927H Brassica oleracea HOM05D005265 ORTHO05D006326 8.1e-49 197.2 129 78.3
CiPaw.10G086700 Carya illinoinensis HOM05D005265 ORTHO05D006326 8.1e-49 197.2 129 75.2
Gohir.D02G238400 Gossypium hirsutum HOM05D005265 ORTHO05D006326 8.1e-49 197.2 130 74.6
Gorai.005G266900 Gossypium raimondii HOM05D005265 ORTHO05D006326 8.1e-49 197.2 130 74.6
Nitab4.5_0003368g0030 Nicotiana tabacum HOM05D005265 ORTHO05D006326 8.1e-49 197.2 130 77.7
Sopen08g002900 Solanum pennellii HOM05D005265 ORTHO05D006326 1.1e-48 196.8 130 76.9
Glyma.15G194300 Glycine max HOM05D005265 ORTHO05D006326 1.4e-48 196.4 129 75.2
PGSC0003DMG400020505 Solanum tuberosum HOM05D005265 ORTHO05D006326 1.4e-48 196.4 130 76.9
EL10Ac7g15766 Beta vulgaris HOM05D005265 ORTHO05D006326 2.4e-48 195.7 129 77.5
COL.COLO4_17668 Corchorus olitorius HOM05D005265 ORTHO05D006326 2.4e-48 195.7 129 73.6
Hma1.2p1_0689F.1_g203690 Hydrangea macrophylla HOM05D005265 ORTHO05D006326 2.4e-48 195.7 130 76.2
Hma1.2p1_1418F.1_g282220 Hydrangea macrophylla HOM05D005265 ORTHO05D006326 2.4e-48 195.7 130 76.2
Manes.06G061100 Manihot esculenta HOM05D005265 ORTHO05D006326 2.4e-48 195.7 130 74.6
Phvul.009G216400 Phaseolus vulgaris HOM05D005265 ORTHO05D006326 2.4e-48 195.7 129 75.2
Solyc08g006930.3 Solanum lycopersicum HOM05D005265 ORTHO05D006326 2.4e-48 195.7 130 76.2
BcaB03g12211 Brassica carinata HOM05D005265 ORTHO05D006326 3.1e-48 195.3 130 76.9
CARHR029770 Cardamine hirsuta HOM05D005265 ORTHO05D006326 3.1e-48 195.3 130 76.2
Phvul.002G140800 Phaseolus vulgaris HOM05D005265 ORTHO05D006326 3.1e-48 195.3 129 76.0
Sp1g26220 Schrenkiella parvula HOM05D005265 ORTHO05D006326 3.1e-48 195.3 130 76.9
Cfa000859 Carpinus fangiana HOM05D005265 ORTHO05D006326 4.0e-48 194.9 130 76.9
TAR626G0103 Trochodendron aralioides HOM05D005265 ORTHO05D006326 4.0e-48 194.9 130 76.2
Lj1g0015817 Lotus japonicus HOM05D005265 ORTHO05D006326 5.3e-48 194.5 129 74.4
RcHm_v2.0_Chr5g0015361 Rosa chinensis HOM05D005265 ORTHO05D006326 5.3e-48 194.5 132 77.3
Gohir.A03G216800 Gossypium hirsutum HOM05D005265 ORTHO05D006326 6.9e-48 194.1 130 73.8
Peaxi162Scf00045g02242 Petunia axillaris HOM05D005265 ORTHO05D006326 6.9e-48 194.1 131 77.9
VMungo1309G1099 Vigna mungo HOM05D005265 ORTHO05D006326 6.9e-48 194.1 129 74.4
AT1G30380 Arabidopsis thaliana HOM05D005265 ORTHO05D006326 9.0e-48 193.7 130 75.4
Cc09_g08490 Coffea canephora HOM05D005265 ORTHO05D006326 9.0e-48 193.7 130 76.9
FAN16G0550 Fragaria x ananassa HOM05D005265 ORTHO05D006326 9.0e-48 193.7 132 77.3
CiPaw.09G117100 Carya illinoinensis HOM05D005265 ORTHO05D006326 1.2e-47 193.4 129 73.6
HanXRQChr04g0113581 Helianthus annuus HOM05D005265 ORTHO05D006326 1.2e-47 193.4 130 76.2
CSS0007721 Camellia sinensis var. sinensis HOM05D005265 ORTHO05D006326 1.5e-47 193.0 131 75.6
CSS0016265 Camellia sinensis var. sinensis HOM05D005265 ORTHO05D006326 1.5e-47 193.0 131 75.6
AUR62038135 Chenopodium quinoa HOM05D005265 ORTHO05D006326 1.5e-47 193.0 130 76.9
THA.LOC104812683 Tarenaya hassleriana HOM05D005265 ORTHO05D006326 1.5e-47 193.0 130 76.9
Potri.006G254200 Populus trichocarpa HOM05D005265 ORTHO05D006326 2.0e-47 192.6 124 80.6
TAR626G0742 Trochodendron aralioides HOM05D005265 ORTHO05D006326 2.0e-47 192.6 130 73.1
MSTRG.7528 Avicennia marina HOM05D005265 ORTHO05D006326 2.6e-47 192.2 132 75.8
FAN25G1721 Fragaria x ananassa HOM05D005265 ORTHO05D006326 2.6e-47 192.2 132 75.8
THA.LOC104814318 Tarenaya hassleriana HOM05D005265 ORTHO05D006326 2.6e-47 192.2 132 77.3
Aa31LG6G5400 Aethionema arabicum HOM05D005265 ORTHO05D006326 3.4e-47 191.8 131 76.3
BcaC05g27071 Brassica carinata HOM05D005265 ORTHO05D006326 3.4e-47 191.8 131 77.1
A09p36080 Brassica napus HOM05D005265 ORTHO05D006326 3.4e-47 191.8 131 77.1
C05p29330 Brassica napus HOM05D005265 ORTHO05D006326 3.4e-47 191.8 131 77.1
BolC5t31665H Brassica oleracea HOM05D005265 ORTHO05D006326 3.4e-47 191.8 131 77.1
CAN.G1882.1 Capsicum annuum HOM05D005265 ORTHO05D006326 3.4e-47 191.8 130 75.4
Nitab4.5_0001809g0020 Nicotiana tabacum HOM05D005265 ORTHO05D006326 3.4e-47 191.8 130 76.9
Sc24g0001600 Simmondsia chinensis HOM05D005265 ORTHO05D006326 3.4e-47 191.8 130 77.7
MD05G1276100 Malus domestica HOM05D005265 ORTHO05D006326 4.5e-47 191.4 135 71.9
Nitab4.5_0000100g0280 Nicotiana tabacum HOM05D005265 ORTHO05D006326 4.5e-47 191.4 130 76.2
arahy.Tifrunner.gnm1.ann1.9042LP Arachis hypogaea HOM05D005265 ORTHO05D006326 5.8e-47 191.0 129 72.1
BcaB07g32648 Brassica carinata HOM05D005265 ORTHO05D006326 7.6e-47 190.7 132 75.8
Atru.chr10.966 Acer truncatum HOM05D005265 ORTHO05D006326 9.9e-47 190.3 129 74.4
BraA09t39132Z Brassica rapa HOM05D005265 ORTHO05D006326 9.9e-47 190.3 131 76.3
Carub.0001s2858 Capsella rubella HOM05D005265 ORTHO05D006326 9.9e-47 190.3 129 74.4
Sabra18G0029900 Salix brachista HOM05D005265 ORTHO05D006326 9.9e-47 190.3 135 75.6
Lalb_Chr08g0233241 Lupinus albus HOM05D005265 ORTHO05D006326 1.3e-46 189.9 129 72.1
AUR62009823 Chenopodium quinoa HOM05D005265 ORTHO05D006326 1.7e-46 189.5 130 75.4
FvH4_3g09680 Fragaria vesca HOM05D005265 ORTHO05D006326 1.7e-46 189.5 132 74.2
FAN11G2263 Fragaria x ananassa HOM05D005265 ORTHO05D006326 1.7e-46 189.5 132 74.2
Glyma.09G087700 Glycine max HOM05D005265 ORTHO05D006326 1.7e-46 189.5 131 72.5
Sed0026922 Sechium edule HOM05D005265 ORTHO05D006326 1.7e-46 189.5 131 76.3
MELO3C007091.2 Cucumis melo HOM05D005265 ORTHO05D006326 2.2e-46 189.1 130 75.4
Duzib248G0887 Durio zibethinus HOM05D005265 ORTHO05D006326 2.2e-46 189.1 129 75.2
ECA236G4370 Erigeron canadensis HOM05D005265 ORTHO05D006326 2.2e-46 189.1 132 75.0
CsaV3_6G052210 Cucumis sativus L. HOM05D005265 ORTHO05D006326 2.9e-46 188.7 131 75.6
HanXRQChr15g0481551 Helianthus annuus HOM05D005265 ORTHO05D006326 3.8e-46 188.3 131 75.6
AL1G44320 Arabidopsis lyrata HOM05D005265 ORTHO05D006326 4.9e-46 188.0 131 74.8
arahy.Tifrunner.gnm1.ann1.ZS1M1K Arachis hypogaea HOM05D005265 ORTHO05D006326 4.9e-46 188.0 129 71.3
Thhalv10009090m.g Eutrema salsugineum HOM05D005265 ORTHO05D006326 4.9e-46 188.0 131 74.8
QL05p054070 Quercus lobata HOM05D005265 ORTHO05D006326 4.9e-46 188.0 129 71.3
Potri.018G027600 Populus trichocarpa HOM05D005265 ORTHO05D006326 6.4e-46 187.6 132 75.8
Ah.08g216220 Amaranthus hybridus HOM05D000506 ORTHO05D000369 8.4e-46 187.2 122 76.2
Duzib052G0655 Durio zibethinus HOM05D005265 ORTHO05D006326 8.4e-46 187.2 130 73.8
SGA_v2.0_scaffold223G42844 Striga asiatica HOM05D005265 ORTHO05D006326 8.4e-46 187.2 127 78.0
Sed0012654 Sechium edule HOM05D005265 ORTHO05D006326 1.4e-45 186.4 130 74.6
Ciclev10017170m.g Citrus clementina HOM05D005265 ORTHO05D006326 3.2e-45 185.3 125 72.8
Actinidia13436 Actinidia chinensis HOM05D005265 ORTHO05D006326 7.1e-45 184.1 129 72.9
Ca_12734_v3 Cicer arietinum L. HOM05D005265 ORTHO05D006326 7.1e-45 184.1 130 71.5
Ca_12740_v3 Cicer arietinum L. HOM05D005265 ORTHO05D006326 7.1e-45 184.1 130 71.5
Lsat_1_v5_gn_7_32001 Lactuca sativa HOM05D005265 ORTHO05D006326 1.6e-44 183.0 132 74.2
Medtr1g026820 Medicago truncatula HOM05D005265 ORTHO05D006326 3.5e-44 181.8 134 72.4
HPP92_019500 Vanilla planifolia HOM05D005265 ORTHO05D006326 7.9e-44 180.6 137 70.8
TWI73G0862 Tripterygium wilfordii HOM05D005265 ORTHO05D006326 1.0e-43 180.3 131 71.0
TWI09G0405 Tripterygium wilfordii HOM05D005265 ORTHO05D006326 1.3e-43 179.9 128 71.1
vmacro03415 Vaccinium macrocarpon HOM05D005265 ORTHO05D006326 1.8e-43 179.5 129 70.5
Actinidia33666 Actinidia chinensis HOM05D005265 ORTHO05D006326 3.0e-43 178.7 129 71.3
ATR0681G400 Amborella trichopoda HOM05D005265 ORTHO05D006326 8.7e-43 177.2 129 71.3
TPR.G24497 Trifolium pratense HOM05D005265 ORTHO05D006326 1.5e-42 176.4 131 71.8
FAN21G2293 Fragaria x ananassa HOM05D005265 ORTHO05D006326 3.3e-42 175.3 104 85.6
Os07g0148900 Oryza sativa ssp. japonica HOM05D005265 ORTHO05D006326 3.3e-42 175.3 129 71.3
Hund18717 Selenicereus undatus HOM05D005265 ORTHO05D006326 9.6e-42 173.7 139 69.1
Psat0s1315g0080 Pisum sativum HOM05D005265 ORTHO05D006326 2.8e-41 172.2 161 60.2
Lalb_Chr23g0275991 Lupinus albus HOM05D005265 ORTHO05D006326 4.8e-41 171.4 101 84.2
Rhsim13G0119400 Rhododendron simsii HOM05D005265 ORTHO05D006326 2.4e-40 169.1 129 69.0
Zm00001eb299990 Zea mays HOM05D005265 ORTHO05D006326 6.9e-40 167.5 128 67.2
SEGI_05857 Sequoiadendron giganteum HOM05D005265 ORTHO05D006326 7.6e-39 164.1 137 64.2
Pp3c3_10740 Physcomitrium patens HOM05D005265 ORTHO05D006326 5.5e-37 157.9 119 68.1
Pp3c13_10540 Physcomitrium patens HOM05D005265 ORTHO05D006326 7.1e-37 157.5 119 67.2
Sp4g16930 Schrenkiella parvula HOM05D005265 ORTHO05D006326 1.2e-36 156.8 132 63.6
Mapoly0125s0033 Marchantia polymorpha HOM05D005265 ORTHO05D006326 1.6e-36 156.4 137 62.0
Nn3g20272 Nelumbo nucifera HOM05D005265 ORTHO05D006326 7.9e-36 154.1 136 65.4
Nn4g26654 Nelumbo nucifera HOM05D005265 ORTHO05D006326 1.9e-34 149.4 136 64.0
AagrBONN_evm.TU.Sc2ySwM_369.184 Anthoceros agrestis HOM05D005265 ORTHO05D006326 4.5e-31 138.3 138 58.0
Pp3c13_10520 Physcomitrium patens HOM05D005265 ORTHO05D006326 5.8e-31 137.9 88 77.3
CBR_g39729 Chara braunii HOM05D005265 ORTHO05D006326 4.1e-24 115.2 128 50.8
SMO358G0410 Selaginella moellendorffii HOM05D005265 ORTHO05D006326 1.4e-21 106.7 78 70.5
Cre17.g724300 Chlamydomonas reinhardtii HOM05D005265 ORTHO05D006326 1.1e-18 97.1 106 50.0
Nn8g40769 Nelumbo nucifera HOM05D005265 ORTHO05D006326 8.2e-17 90.9 75 58.7
RcHm_v2.0_Chr5g0036151 Rosa chinensis HOM05D005265 ORTHO05D006326 1.6e-12 76.6 48 81.2
PRCOL_00005455 Prasinoderma coloniale HOM05D005265 ORTHO05D006326 4.8e-09 65.1 92 41.3
MCO04G068 Micromonas commoda HOM05D005265 ORTHO05D006326 4.1e-08 62.0 78 44.9


User provided reference genes

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