Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE12G0445 Ceratophyllum demersum HOM05D005201 ORTHO05D006139 2.4e-82 308.9 173 100.0
CDE01G0225 Ceratophyllum demersum HOM05D005201 ORTHO05D006139 3.3e-55 218.8 174 64.9
FAN04G1315 Fragaria x ananassa HOM05D005201 ORTHO05D006139 2.2e-51 206.1 163 75.5
Prupe.5G018400 Prunus persica HOM05D005201 ORTHO05D006139 1.1e-50 203.8 163 76.7
FvH4_5g24200 Fragaria vesca HOM05D005201 ORTHO05D006139 7.1e-50 201.1 163 74.8
FAN13G2355 Fragaria x ananassa HOM05D005201 ORTHO05D006139 7.1e-50 201.1 163 74.8
FAN18G1178 Fragaria x ananassa HOM05D005201 ORTHO05D006139 7.1e-50 201.1 163 74.8
Ca_25081_v3 Cicer arietinum L. HOM05D005201 ORTHO05D006139 6.1e-49 198.0 173 72.3
FAN08G2124 Fragaria x ananassa HOM05D005201 ORTHO05D006139 1.3e-48 196.8 174 72.4
Eucgr.D02584 Eucalyptus grandis HOM05D005201 ORTHO05D006139 1.8e-48 196.4 169 71.6
Medtr5g026550 Medicago truncatula HOM05D005201 ORTHO05D006139 8.7e-48 194.1 164 73.8
CiPaw.12G072500 Carya illinoinensis HOM05D005201 ORTHO05D006139 2.5e-47 192.6 174 71.3
SGA_v2.0_scaffold269G46298 Striga asiatica HOM05D005201 ORTHO05D006139 2.5e-47 192.6 173 61.3
Rhsim01G0132000 Rhododendron simsii HOM05D005201 ORTHO05D006139 1.3e-46 190.3 173 69.9
MELO3C016255.2 Cucumis melo HOM05D005201 ORTHO05D006139 2.8e-46 189.1 178 58.4
Os02g0102600 Oryza sativa ssp. japonica HOM05D005201 ORTHO05D006139 8.2e-46 187.6 148 77.7
HanXRQChr07g0205241 Helianthus annuus HOM05D005201 ORTHO05D006139 5.3e-45 184.9 163 72.4
DCAR_000700 Daucus carota HOM05D005201 ORTHO05D006139 8.5e-43 177.6 162 69.1
Thecc.03G324300 Theobroma cacao HOM05D005201 ORTHO05D006139 1.2e-41 173.7 172 66.3
ATR0829G041 Amborella trichopoda HOM05D005201 ORTHO05D006139 4.6e-41 171.8 172 58.1
SGA_v2.0_scaffold447G51751 Striga asiatica HOM05D003334 ORTHO05D004076 6.1e-41 171.4 166 65.7
Potri.003G104400 Populus trichocarpa HOM05D005201 ORTHO05D006139 7.9e-41 171.0 177 65.5
Migut.A00504 Erythranthe guttata HOM05D005201 ORTHO05D006139 2.3e-40 169.5 167 64.7
TAR375G0792 Trochodendron aralioides HOM05D005201 ORTHO05D006139 3.0e-40 169.1 169 52.7
Lsat_1_v5_gn_5_60900 Lactuca sativa HOM05D005201 ORTHO05D006139 4.3e-39 165.2 149 69.1
SalBow4G2195 Salvia bowleyana HOM05D005201 ORTHO05D006139 5.7e-39 164.9 173 53.2
Sabra01G0100200 Salix brachista HOM05D005201 ORTHO05D006139 1.7e-38 163.3 240 42.1
HanXRQChr08g0226681 Helianthus annuus HOM05D005201 ORTHO05D006139 2.8e-38 162.5 160 67.5
RcHm_v2.0_Chr7g0214011 Rosa chinensis HOM05D005201 ORTHO05D006139 2.8e-38 162.5 174 64.9
Hma1.2p1_0268F.1_g107720 Hydrangea macrophylla HOM05D005201 ORTHO05D006139 3.7e-38 162.2 173 63.6
Sabra03G0071400 Salix brachista HOM05D005201 ORTHO05D006139 6.3e-38 161.4 178 64.0
CANSAT21G0726 Cannabis sativa HOM05D005201 ORTHO05D006139 1.4e-37 160.2 171 49.1
Sc07g0008280 Simmondsia chinensis HOM05D005201 ORTHO05D006139 1.4e-37 160.2 173 62.4
DCAR_030956 Daucus carota HOM05D005201 ORTHO05D006139 1.8e-37 159.8 173 60.7
FAN14G2110 Fragaria x ananassa HOM05D005201 ORTHO05D006139 2.4e-37 159.5 167 54.5
MD00G1078600 Malus domestica HOM05D005201 ORTHO05D006139 2.4e-37 159.5 163 55.8
PGR031G3990 Punica granatum HOM05D005201 ORTHO05D006139 2.4e-37 159.5 175 62.9
PGR067G0002 Punica granatum HOM05D005201 ORTHO05D006139 2.4e-37 159.5 175 62.9
FAN10G0178 Fragaria x ananassa HOM05D002235 ORTHO05D006139 4.1e-37 158.7 153 56.9
FvH4_6g43270 Fragaria vesca HOM05D005201 ORTHO05D006139 5.3e-37 158.3 167 53.9
Gohir.A08G146800 Gossypium hirsutum HOM05D005201 ORTHO05D006139 5.3e-37 158.3 159 65.4
vmacro21163 Vaccinium macrocarpon HOM05D005201 ORTHO05D006139 5.3e-37 158.3 129 79.8
CiPaw.11G104600 Carya illinoinensis HOM05D005201 ORTHO05D006139 6.9e-37 157.9 173 62.4
Aqoxy3G02454 Aquilegia oxysepala HOM05D005201 ORTHO05D006139 1.2e-36 157.1 167 49.7
CSS0000299 Camellia sinensis var. sinensis HOM05D005201 ORTHO05D006139 2.6e-36 156.0 174 48.9
FAN05G2652 Fragaria x ananassa HOM05D005201 ORTHO05D006139 2.6e-36 156.0 172 52.3
Duzib205G0777 Durio zibethinus HOM05D005201 ORTHO05D006139 5.9e-36 154.8 173 51.4
PSO339G2945 Papaver somniferum HOM05D005201 ORTHO05D006139 7.7e-36 154.5 159 62.9
Hund14321 Selenicereus undatus HOM05D005201 ORTHO05D006139 7.7e-36 154.5 171 60.8
Gohir.D08G167900 Gossypium hirsutum HOM05D005201 ORTHO05D006139 1.0e-35 154.1 159 64.8
Gorai.004G175100 Gossypium raimondii HOM05D005201 ORTHO05D006139 1.0e-35 154.1 159 64.8
Phvul.002G126500 Phaseolus vulgaris HOM05D005201 ORTHO05D006139 1.0e-35 154.1 167 63.5
Psat2g143240 Pisum sativum HOM05D005201 ORTHO05D006139 1.0e-35 154.1 158 64.6
CSS0007100 Camellia sinensis var. sinensis HOM05D005201 ORTHO05D006139 1.3e-35 153.7 174 48.3
RcHm_v2.0_Chr2g0159541 Rosa chinensis HOM05D005201 ORTHO05D006139 1.3e-35 153.7 147 56.5
AUR62007435 Chenopodium quinoa HOM05D005201 ORTHO05D006139 2.9e-35 152.5 164 61.0
MSTRG.11837 Avicennia marina HOM05D005201 ORTHO05D006139 3.8e-35 152.1 173 61.3
ClCG07G011320 Citrullus lanatus HOM05D005201 ORTHO05D006139 5.0e-35 151.8 175 62.9
Lalb_Chr16g0380611 Lupinus albus HOM05D005201 ORTHO05D006139 5.0e-35 151.8 166 53.0
COL.COLO4_16707 Corchorus olitorius HOM05D005201 ORTHO05D006139 8.5e-35 151.0 173 48.0
Atru.chr6.2111 Acer truncatum HOM05D005201 ORTHO05D006139 1.1e-34 150.6 175 48.6
Actinidia03317 Actinidia chinensis HOM05D005201 ORTHO05D006139 1.1e-34 150.6 173 47.4
ECA240G4218 Erigeron canadensis HOM05D005201 ORTHO05D006139 1.1e-34 150.6 159 64.8
Potri.001G129800 Populus trichocarpa HOM05D005201 ORTHO05D006139 1.1e-34 150.6 178 48.9
TWI32G1103 Tripterygium wilfordii HOM05D005201 ORTHO05D006139 1.1e-34 150.6 163 62.0
VMungo1215G2692 Vigna mungo HOM05D005201 ORTHO05D006139 1.1e-34 150.6 162 64.2
Actinidia25720 Actinidia chinensis HOM05D005201 ORTHO05D006139 1.9e-34 149.8 167 47.3
Oeu057144.1 Olea europaea HOM05D005201 ORTHO05D006139 1.9e-34 149.8 173 52.0
TPR.G39676 Trifolium pratense HOM05D005201 ORTHO05D006139 1.9e-34 149.8 158 64.6
MSTRG.25759 Avicennia marina HOM05D005201 ORTHO05D006139 2.5e-34 149.4 153 49.0
CsaV3_4G006880 Cucumis sativus L. HOM05D005201 ORTHO05D006139 2.5e-34 149.4 175 62.3
EL10Ac5g11893 Beta vulgaris HOM05D005201 ORTHO05D006139 3.2e-34 149.1 170 58.8
AUR62027303 Chenopodium quinoa HOM05D005201 ORTHO05D006139 4.2e-34 148.7 164 59.8
Ciclev10002646m.g Citrus clementina HOM05D005201 ORTHO05D006139 7.2e-34 147.9 168 61.3
Glyma.01G150400 Glycine max HOM05D005201 ORTHO05D006139 9.4e-34 147.5 162 53.1
PSO384G4870 Papaver somniferum HOM05D005201 ORTHO05D006139 9.4e-34 147.5 155 61.9
CAN.G947.20 Capsicum annuum HOM05D005201 ORTHO05D006139 1.2e-33 147.1 166 49.4
AUR62022383 Chenopodium quinoa HOM05D005201 ORTHO05D006139 1.2e-33 147.1 164 59.8
Oeu002017.1 Olea europaea HOM05D005201 ORTHO05D006139 1.2e-33 147.1 174 54.0
Ah.12g056090 Amaranthus hybridus HOM05D005201 ORTHO05D006139 1.6e-33 146.7 175 45.1
TWI60G0094 Tripterygium wilfordii HOM05D005201 ORTHO05D006139 1.6e-33 146.7 163 49.1
arahy.Tifrunner.gnm1.ann1.02E8LK Arachis hypogaea HOM05D005201 ORTHO05D006139 2.1e-33 146.4 173 59.5
arahy.Tifrunner.gnm1.ann1.2T22I7 Arachis hypogaea HOM05D005201 ORTHO05D006139 2.1e-33 146.4 173 59.5
Glyma.09G215400 Glycine max HOM05D005201 ORTHO05D006139 2.1e-33 146.4 162 61.1
Lj8A408T7 Lonicera japonica HOM05D005201 ORTHO05D006139 2.1e-33 146.4 126 77.8
QL12p002095 Quercus lobata HOM05D005201 ORTHO05D006139 2.7e-33 146.0 178 58.4
Dinv09437 Davidia involucrata HOM05D005201 ORTHO05D006139 3.6e-33 145.6 159 62.3
MD06G1017600 Malus domestica HOM05D005201 ORTHO05D006139 3.6e-33 145.6 164 47.6
Cc00_g08490 Coffea canephora HOM05D005201 ORTHO05D006139 7.9e-33 144.4 169 53.8
Cpa.g.sc137.21 Carica papaya HOM05D005201 ORTHO05D006139 1.0e-32 144.1 172 56.4
Lj2g0015792 Lotus japonicus HOM05D005201 ORTHO05D006139 3.9e-32 142.1 158 63.3
Sed0016355 Sechium edule HOM05D005201 ORTHO05D006139 3.9e-32 142.1 167 47.3
Sed0020489 Sechium edule HOM05D005201 ORTHO05D006139 3.9e-32 142.1 165 63.0
Lsat_1_v5_gn_6_15560 Lactuca sativa HOM05D005201 ORTHO05D006139 2.0e-31 139.8 167 48.5
Manes.04G035300 Manihot esculenta HOM05D005201 ORTHO05D006139 2.6e-31 139.4 177 56.5
Lalb_Chr09g0325181 Lupinus albus HOM05D005201 ORTHO05D006139 3.3e-31 139.0 166 58.4
Peaxi162Scf00045g01329 Petunia axillaris HOM05D005201 ORTHO05D006139 5.7e-31 138.3 164 48.2
SGA_v2.0_scaffold2264G54095 Striga asiatica HOM05D005201 ORTHO05D006139 5.7e-31 138.3 106 84.0
Ah.02g117370 Amaranthus hybridus HOM05D005201 ORTHO05D006139 9.7e-31 137.5 152 60.5
PSO063G1500 Papaver somniferum HOM05D005201 ORTHO05D006139 2.2e-30 136.3 150 62.7
PSO782G0015 Papaver somniferum HOM05D005201 ORTHO05D006139 2.2e-30 136.3 150 62.7
CAN.G1741.1 Capsicum annuum HOM05D005201 ORTHO05D006139 2.8e-30 136.0 159 46.5
Nitab4.5_0008438g0010 Nicotiana tabacum HOM05D005201 ORTHO05D006139 1.1e-29 134.0 159 45.9
Zm00001eb229310 Zea mays HOM05D005201 ORTHO05D006139 1.1e-29 134.0 121 74.4
Haze_08003 Corylus avellana HOM05D005201 ORTHO05D006139 1.4e-29 133.7 128 68.8
PGSC0003DMG400029376 Solanum tuberosum HOM05D005201 ORTHO05D006139 1.4e-29 133.7 143 54.5
Sopen12g032120 Solanum pennellii HOM05D005201 ORTHO05D006139 2.4e-29 132.9 145 49.0
Nitab4.5_0001327g0010 Nicotiana tabacum HOM05D005201 ORTHO05D006139 5.3e-29 131.7 154 47.4
unitig_0.g2827 Utricularia gibba HOM05D005201 ORTHO05D006139 9.1e-29 131.0 144 62.5
Nitab4.5_0009069g0010 Nicotiana tabacum HOM05D005201 ORTHO05D006139 4.5e-28 128.6 159 44.7
GSVIVG01036941001 Vitis vinifera HOM05D005201 ORTHO05D006139 4.5e-28 128.6 166 45.2
Solyc08g005910.3 Solanum lycopersicum HOM05D005201 ORTHO05D006139 1.0e-27 127.5 159 44.7
Sopen08g001880 Solanum pennellii HOM05D005201 ORTHO05D006139 1.0e-27 127.5 159 44.7
CANSAT11G0816 Cannabis sativa HOM05D005201 ORTHO05D006139 1.7e-27 126.7 148 61.5
PGSC0003DMG400004473 Solanum tuberosum HOM05D005201 ORTHO05D006139 1.7e-27 126.7 159 44.7
THA.LOC104801352 Tarenaya hassleriana HOM05D005201 ORTHO05D006139 2.2e-27 126.3 162 43.2
Thhalv10014823m.g Eutrema salsugineum HOM05D005201 ORTHO05D006139 2.9e-27 125.9 176 54.0
SEGI_37761 Sequoiadendron giganteum HOM05D005201 ORTHO05D006139 6.5e-27 124.8 154 59.1
AagrBONN_evm.TU.Sc2ySwM_344.4086 Anthoceros agrestis HOM05D005201 ORTHO05D006139 1.1e-26 124.0 112 51.8
Aa31LG11G2130 Aethionema arabicum HOM05D005201 ORTHO05D006139 1.5e-26 123.6 175 52.0
THA.LOC104818333 Tarenaya hassleriana HOM05D005201 ORTHO05D006139 2.5e-26 122.9 163 41.1
AT5G07840 Arabidopsis thaliana HOM05D005201 ORTHO05D006139 5.5e-26 121.7 161 51.6
BcaC04g23459 Brassica carinata HOM05D005201 ORTHO05D006139 4.7e-25 118.6 165 41.2
BraA09t36375Z Brassica rapa HOM05D001456 ORTHO05D002799 4.7e-25 118.6 165 41.2
Nitab4.5_0001159g0040 Nicotiana tabacum HOM05D005201 ORTHO05D006139 4.7e-25 118.6 154 57.1
AL6G18180 Arabidopsis lyrata HOM05D005201 ORTHO05D006139 6.1e-25 118.2 166 54.2
A09p07260 Brassica napus HOM05D005201 ORTHO05D006139 6.1e-25 118.2 155 41.3
C09p08120 Brassica napus HOM05D005201 ORTHO05D006139 6.1e-25 118.2 155 41.3
BolC9t53725H Brassica oleracea HOM05D003751 ORTHO05D006139 6.1e-25 118.2 155 41.3
BraA03t13806Z Brassica rapa HOM05D005201 ORTHO05D006139 1.0e-24 117.5 160 52.5
A03p46860 Brassica napus HOM05D005201 ORTHO05D006139 1.4e-24 117.1 160 53.1
Mapoly0093s0041 Marchantia polymorpha HOM05D005201 ORTHO05D006139 1.4e-24 117.1 158 53.2
Pp3c6_1190 Physcomitrium patens HOM05D005201 ORTHO05D006139 1.4e-24 117.1 167 38.3
BcaC06g33218 Brassica carinata HOM05D005201 ORTHO05D006139 1.8e-24 116.7 160 52.5
BolC7t45014H Brassica oleracea HOM05D005201 ORTHO05D006139 1.8e-24 116.7 160 52.5
Thhalv10005013m.g Eutrema salsugineum HOM05D005201 ORTHO05D006139 1.8e-24 116.7 166 44.0
SMO356G0124 Selaginella moellendorffii HOM05D005201 ORTHO05D006139 2.3e-24 116.3 136 43.4
Sp2g24460 Schrenkiella parvula HOM05D005201 ORTHO05D006139 3.0e-24 115.9 165 53.3
Carub.0008s2190 Capsella rubella HOM05D005201 ORTHO05D006139 4.0e-24 115.5 150 40.0
CARHR274980 Cardamine hirsuta HOM05D005201 ORTHO05D006139 6.7e-24 114.8 165 53.3
C07p44910 Brassica napus HOM05D005201 ORTHO05D006139 4.4e-23 112.1 150 54.7
AT5G61230 Arabidopsis thaliana HOM05D005201 ORTHO05D006139 5.7e-23 111.7 150 40.0
AL8G37890 Arabidopsis lyrata HOM05D005201 ORTHO05D006139 7.5e-23 111.3 165 38.8
Dinv37463 Davidia involucrata HOM05D005201 ORTHO05D006139 5.3e-21 105.1 101 52.5
Nn3g19216 Nelumbo nucifera HOM05D005201 ORTHO05D006139 2.6e-20 102.8 101 53.5
Eucgr.B00905 Eucalyptus grandis HOM05D005201 ORTHO05D006139 2.1e-17 93.2 86 54.7
Solyc12g096260.2 Solanum lycopersicum HOM05D005201 ORTHO05D006139 4.7e-17 92.0 78 60.3
FAN02G0543 Fragaria x ananassa HOM05D002235 ORTHO05D006252 4.8e-14 82.0 96 45.8
Lsat_1_v5_gn_8_13820 Lactuca sativa HOM05D005201 ORTHO05D006139 8.0e-09 64.7 101 36.6
Peaxi162Scf00876g00121 Petunia axillaris HOM05D005201 ORTHO05D006139 8.0e-09 64.7 95 40.0
Aqoxy5G03468 Aquilegia oxysepala HOM05D002893 ORTHO05D003387 7.5e-07 58.2 68 41.2
SEGI_11041 Sequoiadendron giganteum HOM05D002547 ORTHO05D002649 9.8e-07 57.8 66 43.9
Lj1g0008810 Lotus japonicus HOM05D002893 ORTHO05D003387 1.3e-06 57.4 67 40.3
BcaB01g06338 Brassica carinata HOM05D002893 ORTHO05D003387 2.2e-06 56.6 77 40.3
BcaNung03174 Brassica carinata HOM05D002893 ORTHO05D003387 2.2e-06 56.6 76 42.1
Gohir.A09G034400 Gossypium hirsutum HOM05D002893 ORTHO05D003387 2.2e-06 56.6 65 44.6
Gorai.006G040200 Gossypium raimondii HOM05D002893 ORTHO05D003387 2.2e-06 56.6 65 44.6
Thhalv10012767m.g Eutrema salsugineum HOM05D002893 ORTHO05D003387 2.8e-06 56.2 76 40.8
Duzib187G1811 Durio zibethinus HOM05D002893 ORTHO05D003387 3.7e-06 55.8 63 44.4
C09p62930 Brassica napus HOM05D002893 ORTHO05D003387 6.3e-06 55.1 63 46.0
BolC9t59130H Brassica oleracea HOM05D002893 ORTHO05D003387 6.3e-06 55.1 63 46.0
HPP92_006947 Vanilla planifolia HOM05D007464 ORTHO05D009388 6.3e-06 55.1 82 36.6
Dinv33360 Davidia involucrata HOM05D002893 ORTHO05D003387 8.3e-06 54.7 67 38.8


User provided reference genes

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