Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE12G0443 Ceratophyllum demersum HOM05D004123 ORTHO05D004768 1.1e-172 609.8 297 100.0
Nn3g17856 Nelumbo nucifera HOM05D004123 ORTHO05D004768 1.8e-53 213.8 247 52.6
Thecc.02G229500 Theobroma cacao HOM05D004123 ORTHO05D004768 3.7e-46 189.5 223 52.9
Duzib248G0829 Durio zibethinus HOM05D004123 ORTHO05D004768 1.1e-45 188.0 222 53.2
Gohir.A04G098200 Gossypium hirsutum HOM05D004123 ORTHO05D004768 1.4e-45 187.6 220 54.1
Gohir.D04G137875 Gossypium hirsutum HOM05D004123 ORTHO05D004768 7.0e-45 185.3 219 53.9
Gorai.012G122600 Gossypium raimondii HOM05D004123 ORTHO05D004768 7.0e-45 185.3 219 53.9
GSVIVG01011890001 Vitis vinifera HOM05D004123 ORTHO05D004768 1.6e-44 184.1 205 54.6
Manes.14G103000 Manihot esculenta HOM05D004123 ORTHO05D004768 2.0e-44 183.7 233 51.1
MSTRG.844 Avicennia marina HOM05D004123 ORTHO05D004768 1.0e-43 181.4 245 45.3
Nn4g23857 Nelumbo nucifera HOM05D004123 ORTHO05D004768 7.2e-42 175.3 239 48.1
Potri.008G121200 Populus trichocarpa HOM05D004123 ORTHO05D004768 7.2e-42 175.3 224 50.9
Duzib251G0145 Durio zibethinus HOM05D004123 ORTHO05D004768 1.2e-41 174.5 222 51.8
Manes.06G067400 Manihot esculenta HOM05D004123 ORTHO05D004768 4.7e-41 172.6 238 49.6
Cpa.g.sc350.1 Carica papaya HOM05D004123 ORTHO05D004768 8.0e-41 171.8 224 49.6
MSTRG.13535 Avicennia marina HOM05D004123 ORTHO05D004768 1.0e-40 171.4 221 46.6
Oeu043592.1 Olea europaea HOM05D004123 ORTHO05D004768 1.0e-40 171.4 227 46.3
QL01p041642 Quercus lobata HOM05D004123 ORTHO05D004768 1.8e-40 170.6 237 48.9
Duzib268G1624 Durio zibethinus HOM05D004123 ORTHO05D004768 2.3e-40 170.2 223 52.0
TAR629G2125 Trochodendron aralioides HOM05D004946 ORTHO05D006101 3.0e-40 169.9 231 46.8
TWI31G0276 Tripterygium wilfordii HOM05D004123 ORTHO05D004768 1.2e-39 167.9 222 48.2
Gohir.D02G170500 Gossypium hirsutum HOM05D004123 ORTHO05D004768 1.5e-39 167.5 237 49.4
TAR622G0492 Trochodendron aralioides HOM05D004123 ORTHO05D004768 2.0e-39 167.2 243 48.1
MELO3C003021.2 Cucumis melo HOM05D004123 ORTHO05D004768 4.4e-39 166.0 242 50.4
Sed0009095 Sechium edule HOM05D004123 ORTHO05D004768 4.4e-39 166.0 242 47.9
Rhsim09G0107600 Rhododendron simsii HOM05D004123 ORTHO05D004768 5.7e-39 165.6 230 47.8
Gorai.005G191500 Gossypium raimondii HOM05D004123 ORTHO05D004768 1.3e-38 164.5 237 48.9
CsaV3_5G023110 Cucumis sativus L. HOM05D004123 ORTHO05D004768 1.7e-38 164.1 235 50.6
Gohir.A03G147300 Gossypium hirsutum HOM05D004123 ORTHO05D004768 3.7e-38 162.9 237 48.5
CiPaw.15G085900 Carya illinoinensis HOM05D004123 ORTHO05D004768 8.3e-38 161.8 240 46.7
PGR119G1213 Punica granatum HOM05D004123 ORTHO05D004768 8.3e-38 161.8 229 45.4
Phvul.007G027700 Phaseolus vulgaris HOM05D004123 ORTHO05D004768 1.4e-37 161.0 224 48.2
CiPaw.16G065300 Carya illinoinensis HOM05D004123 ORTHO05D004768 2.4e-37 160.2 231 47.6
Oeu034240.1 Olea europaea HOM05D004123 ORTHO05D004768 3.1e-37 159.8 246 44.7
SalBow8G0349 Salvia bowleyana HOM05D004123 ORTHO05D004768 4.1e-37 159.5 222 47.3
Aqoxy3G00286 Aquilegia oxysepala HOM05D004123 ORTHO05D004768 5.3e-37 159.1 249 46.6
Actinidia14896 Actinidia chinensis HOM05D004123 ORTHO05D004768 7.0e-37 158.7 179 53.6
Cc11_g10070 Coffea canephora HOM05D004123 ORTHO05D004768 2.0e-36 157.1 205 47.8
Medtr1g110710 Medicago truncatula HOM05D004123 ORTHO05D004768 3.5e-36 156.4 260 44.2
Haze_17490 Corylus avellana HOM05D004123 ORTHO05D004768 5.9e-36 155.6 241 45.2
Glyma.10G273800 Glycine max HOM05D004123 ORTHO05D004768 5.9e-36 155.6 224 48.2
TPR.G18823 Trifolium pratense HOM05D004123 ORTHO05D004768 5.9e-36 155.6 273 44.0
Lj6C757T7 Lonicera japonica HOM05D004123 ORTHO05D004768 1.0e-35 154.8 242 41.7
Psat6g227440 Pisum sativum HOM05D004123 ORTHO05D004768 1.0e-35 154.8 233 47.2
TAR374G0469 Trochodendron aralioides HOM05D004123 ORTHO05D004768 2.9e-35 153.3 226 46.9
Sabra08G0091900 Salix brachista HOM05D004123 ORTHO05D004768 6.5e-35 152.1 261 43.3
ATR1125G037 Amborella trichopoda HOM05D004123 ORTHO05D004768 1.5e-34 151.0 207 48.8
Ciclev10018307m.g Citrus clementina HOM05D004123 ORTHO05D004768 1.5e-34 151.0 234 46.6
Eucgr.G02316 Eucalyptus grandis HOM05D004123 ORTHO05D004768 1.5e-34 151.0 232 47.0
Lj2g0014688 Lotus japonicus HOM05D004123 ORTHO05D004768 7.2e-34 148.7 234 45.7
SHI16201 Sapria himalayana HOM05D004123 ORTHO05D004768 9.4e-34 148.3 224 44.2
unitig_22.g6557 Utricularia gibba HOM05D004123 ORTHO05D004768 1.6e-33 147.5 240 41.2
Prupe.1G311900 Prunus persica HOM05D004123 ORTHO05D004768 1.0e-32 144.8 247 44.5
FvH4_4g27300 Fragaria vesca HOM05D004123 ORTHO05D004768 1.8e-32 144.1 237 44.3
unitig_747.g21201 Utricularia gibba HOM05D004123 ORTHO05D004768 1.8e-32 144.1 222 42.8
TWI75G1885 Tripterygium wilfordii HOM05D004123 ORTHO05D004768 2.3e-32 143.7 234 45.7
PSO782G4509 Papaver somniferum HOM05D004123 ORTHO05D004768 4.0e-32 142.9 282 40.8
unitig_8.g3254 Utricularia gibba HOM05D004123 ORTHO05D004768 4.0e-32 142.9 239 40.6
vmacro10561 Vaccinium macrocarpon HOM05D004123 ORTHO05D004768 8.8e-32 141.7 184 51.1
PSO063G6205 Papaver somniferum HOM05D004123 ORTHO05D004768 4.4e-31 139.4 265 42.6
Lj5g0020149 Lotus japonicus HOM05D004123 ORTHO05D004768 2.8e-30 136.7 259 42.5
Solyc05g009380.4 Solanum lycopersicum HOM05D004123 ORTHO05D004768 4.8e-30 136.0 244 41.0
Sed0004295 Sechium edule HOM05D004123 ORTHO05D004768 6.3e-30 135.6 181 49.7
Glyma.20G116200 Glycine max HOM05D004123 ORTHO05D004768 1.1e-29 134.8 165 53.9
Os01g0129200 Oryza sativa ssp. japonica HOM05D004123 ORTHO05D004768 1.1e-29 134.8 235 40.9
CAN.G610.78 Capsicum annuum HOM05D004123 ORTHO05D004768 1.8e-29 134.0 197 44.7
ClCG03G009600 Citrullus lanatus HOM05D004123 ORTHO05D004768 1.8e-29 134.0 241 45.6
HanXRQChr08g0213911 Helianthus annuus HOM05D004123 ORTHO05D004768 2.4e-29 133.7 203 43.8
Lsat_1_v5_gn_8_40481 Lactuca sativa HOM05D004123 ORTHO05D004768 5.4e-29 132.5 217 45.2
Lj5g0023256 Lotus japonicus HOM05D004123 ORTHO05D004768 3.5e-28 129.8 230 41.3
Sp5g23550 Schrenkiella parvula HOM05D004123 ORTHO05D004768 3.5e-28 129.8 220 44.5
Lsat_1_v5_gn_3_59041 Lactuca sativa HOM05D004123 ORTHO05D004768 1.0e-27 128.3 217 45.2
FAN12G0145 Fragaria x ananassa HOM05D004123 ORTHO05D004768 1.7e-27 127.5 265 39.2
FAN12G0921 Fragaria x ananassa HOM05D004123 ORTHO05D004768 1.7e-27 127.5 265 39.2
MD16G1042200 Malus domestica HOM05D004123 ORTHO05D004768 2.3e-27 127.1 200 44.5
Zm00001eb335100 Zea mays HOM05D004123 ORTHO05D004768 2.9e-27 126.7 225 42.7
HanXRQChr09g0252701 Helianthus annuus HOM05D004123 ORTHO05D004768 3.8e-27 126.3 172 48.3
FAN07G2244 Fragaria x ananassa HOM05D004123 ORTHO05D004768 6.6e-27 125.6 269 38.7
Thhalv10019033m.g Eutrema salsugineum HOM05D004123 ORTHO05D004768 8.6e-27 125.2 216 43.5
AL2G27340 Arabidopsis lyrata HOM05D004123 ORTHO05D004768 1.1e-26 124.8 213 43.2
AT1G68480 Arabidopsis thaliana HOM05D004123 ORTHO05D004768 2.5e-26 123.6 213 41.3
CANSAT01G1980 Cannabis sativa HOM05D004123 ORTHO05D004768 4.2e-26 122.9 238 38.2
CARHR061260 Cardamine hirsuta HOM05D004123 ORTHO05D004768 7.2e-26 122.1 224 42.0
Phvul.003G031000 Phaseolus vulgaris HOM05D004123 ORTHO05D004768 7.2e-26 122.1 236 40.3
A07p34880 Brassica napus HOM05D004123 ORTHO05D004768 9.5e-26 121.7 233 41.6
C06p41480 Brassica napus HOM05D004123 ORTHO05D004768 9.5e-26 121.7 227 41.4
BolC6t39275H Brassica oleracea HOM05D004123 ORTHO05D004768 9.5e-26 121.7 227 41.4
Carub.0002s1499 Capsella rubella HOM05D004123 ORTHO05D004768 2.1e-25 120.6 224 43.3
BcaC08g46276 Brassica carinata HOM05D004123 ORTHO05D004768 4.7e-25 119.4 225 41.3
A02p15050 Brassica napus HOM05D004123 ORTHO05D004768 4.7e-25 119.4 215 40.5
Lalb_Chr21g0308891 Lupinus albus HOM05D004123 ORTHO05D004768 6.1e-25 119.0 188 43.6
DCAR_026735 Daucus carota HOM05D004123 ORTHO05D004768 1.8e-24 117.5 237 39.2
Lalb_Chr10g0100051 Lupinus albus HOM05D004123 ORTHO05D004768 2.3e-24 117.1 184 46.2
BcaB03g15826 Brassica carinata HOM05D004123 ORTHO05D004768 3.0e-24 116.7 209 41.6
Ah.03g137600 Amaranthus hybridus HOM05D004123 ORTHO05D004768 6.8e-24 115.5 212 41.5
Migut.E00347 Erythranthe guttata HOM05D004123 ORTHO05D004768 3.4e-23 113.2 115 54.8
Aa31sc366G10 Aethionema arabicum HOM05D004123 ORTHO05D004768 5.7e-23 112.5 247 38.1
Lsat_1_v5_gn_8_41281 Lactuca sativa HOM05D004123 ORTHO05D004768 9.8e-23 111.7 108 57.4
MD13G1040900 Malus domestica HOM05D004123 ORTHO05D004768 9.8e-23 111.7 204 42.2
FAN22G2099 Fragaria x ananassa HOM05D004123 ORTHO05D004768 1.7e-22 110.9 144 50.7
HPP92_004807 Vanilla planifolia HOM05D004123 ORTHO05D004768 1.7e-22 110.9 151 46.4
BcaB05g24386 Brassica carinata HOM05D004123 ORTHO05D004768 2.8e-22 110.2 102 61.8
HPP92_004806 Vanilla planifolia HOM05D004123 ORTHO05D004768 8.3e-22 108.6 146 47.3
Sc04g0006360 Simmondsia chinensis HOM05D004123 ORTHO05D004768 1.4e-21 107.8 238 38.7
THA.LOC104821930 Tarenaya hassleriana HOM05D004123 ORTHO05D004768 1.8e-21 107.5 215 40.0
BolC2t08567H Brassica oleracea HOM05D004123 ORTHO05D004768 2.4e-21 107.1 227 37.9
Aa31LG1G1560 Aethionema arabicum HOM05D004123 ORTHO05D004768 1.6e-20 104.4 202 42.1
C02p24750 Brassica napus HOM05D004123 ORTHO05D004768 1.6e-20 104.4 229 38.0
Thhalv10009343m.g Eutrema salsugineum HOM05D004123 ORTHO05D004768 2.7e-20 103.6 221 38.9
THA.LOC104805254 Tarenaya hassleriana HOM05D004123 ORTHO05D004768 2.7e-20 103.6 208 39.4
CSS0039482 Camellia sinensis var. sinensis HOM05D004123 ORTHO05D004768 2.3e-19 100.5 80 67.5
VMungo1215G3079 Vigna mungo HOM05D004123 ORTHO05D004768 3.9e-19 99.8 239 36.0
AT1G13400 Arabidopsis thaliana HOM05D004123 ORTHO05D004768 1.1e-18 98.2 170 45.3
Carub.0001s1311 Capsella rubella HOM05D004123 ORTHO05D004768 1.1e-18 98.2 158 46.2
Cfa018590 Carpinus fangiana HOM05D004123 ORTHO05D004768 3.3e-18 96.7 150 46.0
Sp1g11890 Schrenkiella parvula HOM05D004123 ORTHO05D004768 4.3e-18 96.3 218 39.0
A08p32310 Brassica napus HOM05D004123 ORTHO05D004768 1.6e-17 94.4 223 37.2
BcaC05g25048 Brassica carinata HOM05D004123 ORTHO05D004768 2.1e-17 94.0 239 37.7
Potri.010G124200 Populus trichocarpa HOM05D004123 ORTHO05D004768 2.1e-17 94.0 165 43.0
Sabra10G0094200 Salix brachista HOM05D004123 ORTHO05D004768 2.8e-17 93.6 88 60.2
BraA08t35155Z Brassica rapa HOM05D004123 ORTHO05D004768 3.6e-17 93.2 222 36.5
CARHR013770 Cardamine hirsuta HOM05D004123 ORTHO05D004768 4.7e-17 92.8 141 44.7
AL1G25160 Arabidopsis lyrata HOM05D004123 ORTHO05D004768 6.1e-17 92.4 159 44.0
C08p16160 Brassica napus HOM05D004123 ORTHO05D004768 6.1e-17 92.4 229 37.6
Nitab4.5_0000791g0080 Nicotiana tabacum HOM05D004123 ORTHO05D004768 1.8e-16 90.9 168 39.3
Nitab4.5_0003373g0030 Nicotiana tabacum HOM05D004123 ORTHO05D004768 2.3e-16 90.5 231 33.8
TPR.G971 Trifolium pratense HOM05D004123 ORTHO05D004768 6.8e-16 89.0 95 54.7
BolC8t49237H Brassica oleracea HOM05D004123 ORTHO05D004768 2.0e-15 87.4 245 36.3
Psat6g226920 Pisum sativum HOM05D004123 ORTHO05D004768 4.4e-15 86.3 233 35.2
BcaB03g13142 Brassica carinata HOM05D004123 ORTHO05D004768 2.9e-14 83.6 188 37.2
VMungo0720G2589 Vigna mungo HOM05D004123 ORTHO05D004768 1.9e-13 80.9 228 36.8
Migut.L01390 Erythranthe guttata HOM05D004123 ORTHO05D004768 5.4e-13 79.3 160 35.6
Zm00001eb125440 Zea mays HOM05D004123 ORTHO05D004768 1.7e-11 74.3 198 33.8
Dinv21080 Davidia involucrata HOM05D004123 ORTHO05D004768 2.3e-11 73.9 214 30.8
Sopen05g005180 Solanum pennellii HOM05D004123 ORTHO05D004768 3.9e-11 73.2 180 34.4
CSS0040364 Camellia sinensis var. sinensis HOM05D004123 ORTHO05D004768 6.6e-11 72.4 180 32.8
Ca_03055_v3 Cicer arietinum L. HOM05D004123 ORTHO05D004768 8.6e-11 72.0 155 36.8
arahy.Tifrunner.gnm1.ann1.U1U6XH Arachis hypogaea HOM05D004123 ORTHO05D004768 4.3e-10 69.7 204 35.3
Dinv31634 Davidia involucrata HOM05D004123 ORTHO05D004768 4.3e-10 69.7 199 32.7
COL.COLO4_03992 Corchorus olitorius HOM05D004123 ORTHO05D004768 7.3e-10 68.9 223 32.7
SMO266G0088 Selaginella moellendorffii HOM05D004123 ORTHO05D004768 2.1e-09 67.4 39 79.5
SMO288G0011 Selaginella moellendorffii HOM05D004123 ORTHO05D004768 2.1e-09 67.4 39 79.5
AagrBONN_evm.TU.Sc2ySwM_228.1523 Anthoceros agrestis HOM05D004123 ORTHO05D004768 2.8e-09 67.0 79 53.2
Pp3c20_10790 Physcomitrium patens HOM05D004123 ORTHO05D004768 4.7e-09 66.2 56 57.1
Pp3c23_2190 Physcomitrium patens HOM05D004123 ORTHO05D004768 4.7e-09 66.2 54 55.6
Pp3c3_21050 Physcomitrium patens HOM05D004123 ORTHO05D004768 6.2e-09 65.9 50 58.0
Pp3c23_800 Physcomitrium patens HOM05D059517 ORTHO05D004768 1.4e-08 64.7 50 64.0
SalBow8G0756 Salvia bowleyana HOM05D004123 ORTHO05D004768 2.3e-08 63.9 214 30.4
Pp3c23_960 Physcomitrium patens HOM05D004123 ORTHO05D004768 3.1e-08 63.5 49 57.1
Lalb_Chr02g0145931 Lupinus albus HOM05D004123 ORTHO05D004768 4.0e-08 63.2 158 35.4
RcHm_v2.0_Chr4g0435091 Rosa chinensis HOM05D004123 ORTHO05D004768 2.6e-07 60.5 150 33.3
AT5G48890 Arabidopsis thaliana HOM05D000333 ORTHO05D000190 2.2e-06 57.4 150 32.0
Carub.0008s0861 Capsella rubella HOM05D000333 ORTHO05D000190 3.7e-06 56.6 119 37.0
DCAR_007247 Daucus carota HOM05D004123 ORTHO05D004768 3.7e-06 56.6 147 31.3
arahy.Tifrunner.gnm1.ann1.A2D7P4 Arachis hypogaea HOM05D004123 ORTHO05D004768 4.9e-06 56.2 170 36.5
Thhalv10005585m.g Eutrema salsugineum HOM05D000333 ORTHO05D000190 6.4e-06 55.8 113 35.4
TWI73G1059 Tripterygium wilfordii HOM05D000523 ORTHO05D001559 8.3e-06 55.5 98 33.7


User provided reference genes

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