Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE12G0434 Ceratophyllum demersum HOM05D003186 ORTHO05D003452 1.0e-133 480.3 287 100.0
TAR375G0380 Trochodendron aralioides HOM05D003186 ORTHO05D003452 2.2e-27 127.1 291 39.2
Nn1g00622 Nelumbo nucifera HOM05D003186 ORTHO05D003452 1.1e-23 114.8 303 35.6
Dinv44017 Davidia involucrata HOM05D003186 ORTHO05D003452 1.5e-23 114.4 302 35.4
MSTRG.28131 Avicennia marina HOM05D003186 ORTHO05D003452 4.2e-23 112.8 292 36.0
Dinv43584 Davidia involucrata HOM05D003186 ORTHO05D003452 4.2e-23 112.8 304 34.2
Atru.chr5.38 Acer truncatum HOM05D003186 ORTHO05D003452 2.3e-21 107.1 317 33.8
MBI04_g03333_MAGBIO Magnolia biondii HOM05D003186 ORTHO05D003452 3.0e-21 106.7 277 36.5
Nitab4.5_0006873g0020 Nicotiana tabacum HOM05D003186 ORTHO05D003452 3.0e-21 106.7 312 33.0
Atru.chr5.68 Acer truncatum HOM05D003186 ORTHO05D003452 4.0e-21 106.3 319 33.5
Sed0022506 Sechium edule HOM05D003186 ORTHO05D003452 4.0e-21 106.3 320 33.1
Gorai.008G111700 Gossypium raimondii HOM05D003186 ORTHO05D003452 2.0e-20 104.0 285 33.3
Cfa011019 Carpinus fangiana HOM05D003186 ORTHO05D003452 4.4e-20 102.8 304 32.6
COL.COLO4_12347 Corchorus olitorius HOM05D003186 ORTHO05D003452 4.4e-20 102.8 301 34.9
Hma1.2p1_0021F.1_g014275 Hydrangea macrophylla HOM05D003186 ORTHO05D003452 4.4e-20 102.8 291 33.0
Hma1.2p1_0021F.1_g014290 Hydrangea macrophylla HOM05D003186 ORTHO05D003452 4.4e-20 102.8 291 33.0
TAR374G0545 Trochodendron aralioides HOM05D003186 ORTHO05D003452 5.7e-20 102.4 281 34.5
Nitab4.5_0004088g0100 Nicotiana tabacum HOM05D003186 ORTHO05D003452 9.8e-20 101.7 310 32.3
Duzib138G0449 Durio zibethinus HOM05D003186 ORTHO05D003452 1.3e-19 101.3 299 34.1
Gohir.A12G099500 Gossypium hirsutum HOM05D003186 ORTHO05D003452 1.7e-19 100.9 288 33.0
Gohir.D12G102500 Gossypium hirsutum HOM05D003186 ORTHO05D003452 1.7e-19 100.9 285 33.0
Lj9P549T18 Lonicera japonica HOM05D003186 ORTHO05D003452 2.2e-19 100.5 296 32.4
Glyma.18G245700 Glycine max HOM05D003186 ORTHO05D003452 2.8e-19 100.1 285 30.2
Haze_02907 Corylus avellana HOM05D003186 ORTHO05D003452 6.3e-19 99.0 305 31.8
Gohir.D08G065200 Gossypium hirsutum HOM05D003186 ORTHO05D003452 8.3e-19 98.6 303 33.3
Solyc01g088530.2 Solanum lycopersicum HOM05D003186 ORTHO05D003452 8.3e-19 98.6 293 31.4
PGSC0003DMG400001684 Solanum tuberosum HOM05D003186 ORTHO05D003452 1.4e-18 97.8 297 30.6
MSTRG.17102 Avicennia marina HOM05D003186 ORTHO05D003452 1.8e-18 97.4 299 32.8
Gorai.004G067500 Gossypium raimondii HOM05D003186 ORTHO05D003452 1.8e-18 97.4 303 33.0
CiPaw.13G021700 Carya illinoinensis HOM05D003186 ORTHO05D003452 2.4e-18 97.1 314 31.5
Gohir.A08G141000 Gossypium hirsutum HOM05D003186 ORTHO05D003452 2.4e-18 97.1 293 33.1
Sopen01g035390 Solanum pennellii HOM05D003186 ORTHO05D003452 7.0e-18 95.5 297 30.6
CiPaw.14G016300 Carya illinoinensis HOM05D003186 ORTHO05D003452 1.2e-17 94.7 314 31.5
Duzib268G0279 Durio zibethinus HOM05D003186 ORTHO05D003452 1.2e-17 94.7 301 32.9
Psat3g101600 Pisum sativum HOM05D003186 ORTHO05D003452 1.2e-17 94.7 297 30.6
ATR0665G229 Amborella trichopoda HOM05D003186 ORTHO05D003452 2.7e-17 93.6 307 35.2
MSTRG.20661 Avicennia marina HOM05D003186 ORTHO05D003452 2.7e-17 93.6 293 31.4
Gohir.A08G055900 Gossypium hirsutum HOM05D003186 ORTHO05D003452 3.5e-17 93.2 303 32.7
Gohir.D08G162100 Gossypium hirsutum HOM05D003186 ORTHO05D003452 5.9e-17 92.4 293 33.8
Actinidia33295 Actinidia chinensis HOM05D003186 ORTHO05D003452 1.3e-16 91.3 291 31.3
Actinidia05791 Actinidia chinensis HOM05D003186 ORTHO05D003452 2.3e-16 90.5 286 31.5
Thecc.01G403000 Theobroma cacao HOM05D003186 ORTHO05D003452 2.3e-16 90.5 309 32.0
BcaB02g08836 Brassica carinata HOM05D003186 ORTHO05D003452 2.9e-16 90.1 286 30.8
AL5G42410 Arabidopsis lyrata HOM05D003186 ORTHO05D003452 3.9e-16 89.7 290 31.4
Gorai.004G168400 Gossypium raimondii HOM05D003186 ORTHO05D003452 3.9e-16 89.7 299 32.8
Peaxi162Scf00745g00012 Petunia axillaris HOM05D003186 ORTHO05D003452 3.9e-16 89.7 315 30.8
TWI59G0953 Tripterygium wilfordii HOM05D003186 ORTHO05D003452 3.9e-16 89.7 306 29.4
Phvul.008G051200 Phaseolus vulgaris HOM05D003186 ORTHO05D003452 6.6e-16 89.0 302 29.5
SalBow4G0872 Salvia bowleyana HOM05D003186 ORTHO05D003452 1.1e-15 88.2 291 31.3
Migut.B01481 Erythranthe guttata HOM05D003186 ORTHO05D003452 1.5e-15 87.8 288 29.5
VMungo1383G2278 Vigna mungo HOM05D003186 ORTHO05D003452 1.5e-15 87.8 301 29.6
Nn6g33672 Nelumbo nucifera HOM05D003186 ORTHO05D003452 1.9e-15 87.4 282 31.9
Sed0018587 Sechium edule HOM05D003186 ORTHO05D003452 2.5e-15 87.0 302 30.8
Aqoxy3G02543 Aquilegia oxysepala HOM05D000001 ORTHO05D004986 7.3e-15 85.5 293 42.0
FAN06G1121 Fragaria x ananassa HOM05D003186 ORTHO05D003452 7.3e-15 85.5 311 29.9
TPR.G27403 Trifolium pratense HOM05D003186 ORTHO05D003452 9.5e-15 85.1 297 30.0
MELO3C006262.2 Cucumis melo HOM05D003186 ORTHO05D003452 1.2e-14 84.7 302 29.5
Manes.05G059100 Manihot esculenta HOM05D003186 ORTHO05D003452 1.2e-14 84.7 316 30.1
QL04p025941 Quercus lobata HOM05D003186 ORTHO05D003452 1.2e-14 84.7 314 32.8
QL04p026933 Quercus lobata HOM05D003186 ORTHO05D003452 1.2e-14 84.7 314 32.8
Thhalv10001551m.g Eutrema salsugineum HOM05D003186 ORTHO05D003452 2.8e-14 83.6 309 28.8
Oeu024385.1 Olea europaea HOM05D003186 ORTHO05D003452 3.6e-14 83.2 312 30.1
THA.LOC104817174 Tarenaya hassleriana HOM05D003186 ORTHO05D003452 3.6e-14 83.2 289 29.1
CAN.G756.11 Capsicum annuum HOM05D003186 ORTHO05D003452 6.1e-14 82.4 308 31.5
Migut.N01712 Erythranthe guttata HOM05D003186 ORTHO05D003452 6.1e-14 82.4 300 30.3
Glyma.09G247300 Glycine max HOM05D003186 ORTHO05D003452 1.0e-13 81.6 298 28.5
FAN03G3421 Fragaria x ananassa HOM05D003186 ORTHO05D003452 1.4e-13 81.3 326 28.2
Nitab4.5_0016340g0010 Nicotiana tabacum HOM05D003186 ORTHO05D003452 1.4e-13 81.3 296 29.7
CsaV3_3G010380 Cucumis sativus L. HOM05D003186 ORTHO05D003452 2.3e-13 80.5 302 28.5
Cc02_g25690 Coffea canephora HOM05D003186 ORTHO05D003452 3.1e-13 80.1 312 27.9
FvH4_7g08720 Fragaria vesca HOM05D003186 ORTHO05D003452 4.0e-13 79.7 323 29.1
Lj1g0019973 Lotus japonicus HOM05D003186 ORTHO05D003452 4.0e-13 79.7 297 28.3
CARHR139820 Cardamine hirsuta HOM05D003186 ORTHO05D003452 5.2e-13 79.3 303 30.4
Rhsim01G0144500 Rhododendron simsii HOM05D003186 ORTHO05D003452 5.2e-13 79.3 282 29.8
A09p52480 Brassica napus HOM05D003186 ORTHO05D003452 8.9e-13 78.6 273 31.1
Potri.002G135400 Populus trichocarpa HOM05D003186 ORTHO05D003452 8.9e-13 78.6 320 28.8
CDE11G0290 Ceratophyllum demersum HOM05D003186 ORTHO05D003452 1.2e-12 78.2 85 49.4
Prupe.2G114900 Prunus persica HOM05D003186 ORTHO05D003452 1.2e-12 78.2 301 26.2
Sabra02G0105200 Salix brachista HOM05D003186 ORTHO05D003452 1.2e-12 78.2 318 27.7
AT2G44600 Arabidopsis thaliana HOM05D003186 ORTHO05D003452 1.5e-12 77.8 304 28.6
Ca_08022_v3 Cicer arietinum L. HOM05D003186 ORTHO05D003452 1.5e-12 77.8 291 29.2
Duzib133G0015 Durio zibethinus HOM05D003186 ORTHO05D003452 1.5e-12 77.8 304 30.9
DCAR_025021 Daucus carota HOM05D003186 ORTHO05D003452 2.6e-12 77.0 289 29.4
Oeu034770.1 Olea europaea HOM05D003186 ORTHO05D003452 2.6e-12 77.0 311 30.5
SGA_v2.0_scaffold77G25250 Striga asiatica HOM05D003186 ORTHO05D003452 3.4e-12 76.6 295 31.5
arahy.Tifrunner.gnm1.ann1.U9U8W4 Arachis hypogaea HOM05D003186 ORTHO05D003452 4.4e-12 76.3 298 27.9
Nitab4.5_0000204g0050 Nicotiana tabacum HOM05D003186 ORTHO05D003452 4.4e-12 76.3 296 29.1
Potri.014G043800 Populus trichocarpa HOM05D003186 ORTHO05D003452 5.8e-12 75.9 316 36.4
Migut.O00568 Erythranthe guttata HOM05D003186 ORTHO05D003452 7.5e-12 75.5 288 29.9
FAN10G1238 Fragaria x ananassa HOM05D003186 ORTHO05D003452 9.8e-12 75.1 323 27.6
Thhalv10006502m.g Eutrema salsugineum HOM05D003186 ORTHO05D003452 2.2e-11 73.9 293 30.4
Aa31LG10G14340 Aethionema arabicum HOM05D003186 ORTHO05D003452 2.9e-11 73.6 297 30.3
Carub.0004s2715 Capsella rubella HOM05D003186 ORTHO05D003452 2.9e-11 73.6 305 31.5
ClCG06G000800 Citrullus lanatus HOM05D003186 ORTHO05D003452 3.7e-11 73.2 360 29.2
CsaV3_6G006600 Cucumis sativus L. HOM05D003186 ORTHO05D003452 4.9e-11 72.8 323 27.9
Oeu037407.1 Olea europaea HOM05D003186 ORTHO05D003452 6.4e-11 72.4 286 29.7
Rhsim07G0039500 Rhododendron simsii HOM05D003186 ORTHO05D003452 8.3e-11 72.0 294 28.6
BraA09t40678Z Brassica rapa HOM05D003186 ORTHO05D003452 1.1e-10 71.6 273 30.8
FAN01G1315 Fragaria x ananassa HOM05D003186 ORTHO05D003452 1.1e-10 71.6 325 27.4
CANSAT25G0028 Cannabis sativa HOM05D003186 ORTHO05D003452 1.4e-10 71.2 341 29.0
Sed0008398 Sechium edule HOM05D003186 ORTHO05D003452 1.4e-10 71.2 305 28.2
Ciclev10021280m.g Citrus clementina HOM05D003186 ORTHO05D003452 1.9e-10 70.9 306 32.0
FAN10G4096 Fragaria x ananassa HOM05D003186 ORTHO05D003452 1.9e-10 70.9 318 28.3
PGR042G2698 Punica granatum HOM05D003186 ORTHO05D003452 2.4e-10 70.5 310 29.7
AT3G60200 Arabidopsis thaliana HOM05D003186 ORTHO05D003452 4.1e-10 69.7 295 28.1
HPP92_025455 Vanilla planifolia HOM05D003186 ORTHO05D003452 5.4e-10 69.3 291 30.6
C08p35230 Brassica napus HOM05D003186 ORTHO05D003452 7.0e-10 68.9 273 29.7
BolC8t51117H Brassica oleracea HOM05D003186 ORTHO05D003452 7.0e-10 68.9 273 29.7
MELO3C022461.2 Cucumis melo HOM05D003186 ORTHO05D003452 7.0e-10 68.9 321 31.2
Gorai.007G084000 Gossypium raimondii HOM05D003186 ORTHO05D003452 7.0e-10 68.9 286 28.7
BcaC02g12291 Brassica carinata HOM05D003186 ORTHO05D003452 9.2e-10 68.6 295 27.5
C04p05560 Brassica napus HOM05D003186 ORTHO05D003452 9.2e-10 68.6 295 27.5
TWI23G1002 Tripterygium wilfordii HOM05D003186 ORTHO05D003452 9.2e-10 68.6 267 31.1
Zm00001eb187670 Zea mays HOM05D003186 ORTHO05D003452 9.2e-10 68.6 288 30.6
BcaC07g40522 Brassica carinata HOM05D003186 ORTHO05D003452 1.6e-09 67.8 273 29.3
Gohir.D11G078500 Gossypium hirsutum HOM05D003186 ORTHO05D003452 1.6e-09 67.8 286 28.3
MD07G1088100 Malus domestica HOM05D003186 ORTHO05D003452 2.0e-09 67.4 300 27.3
SalBow5G4877 Salvia bowleyana HOM05D003186 ORTHO05D003452 2.7e-09 67.0 288 27.1
Zm00001eb251070 Zea mays HOM05D003186 ORTHO05D003452 3.5e-09 66.6 283 29.3
HanXRQChr06g0168251 Helianthus annuus HOM05D003186 ORTHO05D003452 6.0e-09 65.9 297 28.3
Sabra14G0031700 Salix brachista HOM05D003186 ORTHO05D003452 7.8e-09 65.5 321 27.4
PSO339G5444 Papaver somniferum HOM05D003186 ORTHO05D003452 1.0e-08 65.1 342 27.2
Aa31LG1G26150 Aethionema arabicum HOM05D003186 ORTHO05D003452 1.7e-08 64.3 315 27.6
BolC4t22186H Brassica oleracea HOM05D003186 ORTHO05D003452 1.7e-08 64.3 282 27.0
Actinidia30956 Actinidia chinensis HOM05D003186 ORTHO05D003452 2.3e-08 63.9 248 29.4
BraA05t19451Z Brassica rapa HOM05D003186 ORTHO05D003452 2.3e-08 63.9 279 27.2
Lj3g0018708 Lotus japonicus HOM05D003186 ORTHO05D003452 2.3e-08 63.9 286 25.9
Hund17130 Selenicereus undatus HOM05D003186 ORTHO05D003452 3.9e-08 63.2 288 30.6
ECA236G2684 Erigeron canadensis HOM05D003186 ORTHO05D003452 5.0e-08 62.8 320 27.8
Lsat_1_v5_gn_0_5020 Lactuca sativa HOM05D003186 ORTHO05D003452 5.0e-08 62.8 332 31.6
ECA248G0129 Erigeron canadensis HOM05D003186 ORTHO05D003452 6.6e-08 62.4 159 35.8
A05p04750 Brassica napus HOM05D003186 ORTHO05D003452 1.1e-07 61.6 282 27.0
Glyma.07G120800 Glycine max HOM05D003186 ORTHO05D003452 2.5e-07 60.5 288 25.3
CARHR170520 Cardamine hirsuta HOM05D003186 ORTHO05D003452 3.3e-07 60.1 301 25.6
HanXRQChr17g0550401 Helianthus annuus HOM05D003186 ORTHO05D003452 3.3e-07 60.1 317 28.1
Gohir.A11G073800 Gossypium hirsutum HOM05D003186 ORTHO05D003452 4.3e-07 59.7 285 27.7
Zm00001eb072580 Zea mays HOM05D003186 ORTHO05D003452 4.3e-07 59.7 280 27.1
HanXRQChr01g0017501 Helianthus annuus HOM05D003186 ORTHO05D003452 5.6e-07 59.3 299 26.1
CDE02G0869 Ceratophyllum demersum HOM05D003186 ORTHO05D003452 7.3e-07 58.9 224 33.5
PGR004G1173 Punica granatum HOM05D003186 ORTHO05D003452 7.3e-07 58.9 158 36.7
Sp4g26690 Schrenkiella parvula HOM05D003186 ORTHO05D003452 9.5e-07 58.5 305 25.6
unitig_750.g28400 Utricularia gibba HOM05D003186 ORTHO05D003452 9.5e-07 58.5 282 28.0
THA.LOC104803082 Tarenaya hassleriana HOM05D003186 ORTHO05D003452 1.2e-06 58.2 327 25.1
Ah.05g177570 Amaranthus hybridus HOM05D003186 ORTHO05D003452 4.7e-06 56.2 300 27.7
AL4G43640 Arabidopsis lyrata HOM05D003186 ORTHO05D003452 4.7e-06 56.2 314 26.1
Os02g0689500 Oryza sativa ssp. japonica HOM05D003186 ORTHO05D003452 4.7e-06 56.2 119 39.5
HanXRQChr11g0344041 Helianthus annuus HOM05D003186 ORTHO05D003452 6.2e-06 55.8 115 42.6
unitig_0.g1329 Utricularia gibba HOM05D003186 ORTHO05D003452 8.0e-06 55.5 75 44.0


User provided reference genes

Program Settings