Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE12G0422 Ceratophyllum demersum HOM05D005270 ORTHO05D006239 2.1e-219 765.4 387 100.0
MBI04_g37584_MAGBIO Magnolia biondii HOM05D005270 ORTHO05D006239 1.8e-157 559.7 396 72.7
ATR1152G004 Amborella trichopoda HOM05D005270 ORTHO05D006239 3.3e-156 555.4 395 71.6
Hma1.2p1_1414F.1_g281890 Hydrangea macrophylla HOM05D005270 ORTHO05D006239 2.2e-155 552.7 398 71.1
RcHm_v2.0_Chr7g0202331 Rosa chinensis HOM05D005270 ORTHO05D006239 4.1e-154 548.5 390 71.3
Dinv21601 Davidia involucrata HOM05D005270 ORTHO05D006239 1.2e-153 547.0 395 70.9
Atru.chr9.1379_Atru.chr9.1380 Acer truncatum HOM05D005270 ORTHO05D006239 2.0e-153 546.2 392 70.9
TAR629G2769 Trochodendron aralioides HOM05D005270 ORTHO05D006239 2.6e-153 545.8 337 79.8
CSS0023019 Camellia sinensis var. sinensis HOM05D005270 ORTHO05D006239 3.5e-153 545.4 398 69.8
CSS0046114 Camellia sinensis var. sinensis HOM05D005270 ORTHO05D006239 3.5e-153 545.4 398 69.8
CANSAT21G2027 Cannabis sativa HOM05D005270 ORTHO05D006239 7.7e-153 544.3 399 70.4
FAN08G1405 Fragaria x ananassa HOM05D005270 ORTHO05D006239 7.7e-153 544.3 391 71.9
FvH4_5g00280 Fragaria vesca HOM05D005270 ORTHO05D006239 1.0e-152 543.9 391 71.9
Gohir.A09G195500 Gossypium hirsutum HOM05D005270 ORTHO05D006239 1.0e-152 543.9 387 72.1
Gohir.A03G010000 Gossypium hirsutum HOM05D005270 ORTHO05D006239 1.3e-152 543.5 396 70.7
Gorai.006G212700 Gossypium raimondii HOM05D005270 ORTHO05D006239 2.2e-152 542.7 387 71.6
FAN13G2928 Fragaria x ananassa HOM05D005270 ORTHO05D006239 2.9e-152 542.3 391 71.9
QL12p013868 Quercus lobata HOM05D005270 ORTHO05D006239 2.9e-152 542.3 396 71.7
Gohir.D03G160700 Gossypium hirsutum HOM05D005270 ORTHO05D006239 3.8e-152 542.0 396 70.5
Gohir.D09G190100 Gossypium hirsutum HOM05D005270 ORTHO05D006239 3.8e-152 542.0 396 70.7
Ciclev10020501m.g Citrus clementina HOM05D005270 ORTHO05D006239 5.0e-152 541.6 395 70.9
FAN18G1040 Fragaria x ananassa HOM05D005270 ORTHO05D006239 6.5e-152 541.2 391 71.6
MD06G1067000 Malus domestica HOM05D005270 ORTHO05D006239 6.5e-152 541.2 391 70.8
Prupe.5G075500 Prunus persica HOM05D005270 ORTHO05D006239 8.5e-152 540.8 390 71.3
Cc08_g12920 Coffea canephora HOM05D005270 ORTHO05D006239 1.1e-151 540.4 353 75.1
GSVIVG01004774001 Vitis vinifera HOM05D005270 ORTHO05D006239 3.2e-151 538.9 397 70.3
FAN04G3018 Fragaria x ananassa HOM05D005270 ORTHO05D006239 5.5e-151 538.1 396 70.5
PGR031G3926 Punica granatum HOM05D005270 ORTHO05D006239 5.5e-151 538.1 355 74.4
Eucgr.D02030 Eucalyptus grandis HOM05D005270 ORTHO05D006239 7.2e-151 537.7 344 77.3
CiPaw.11G150400 Carya illinoinensis HOM05D005270 ORTHO05D006239 9.4e-151 537.3 398 70.4
Lj2A211T58 Lonicera japonica HOM05D005270 ORTHO05D006239 9.4e-151 537.3 353 75.1
Potri.001G120400 Populus trichocarpa HOM05D005270 ORTHO05D006239 1.2e-150 537.0 346 76.6
Actinidia27450 Actinidia chinensis HOM05D005270 ORTHO05D006239 2.7e-150 535.8 397 68.8
Manes.01G076600 Manihot esculenta HOM05D005270 ORTHO05D006239 2.7e-150 535.8 354 76.6
GSVIVG01001274001 Vitis vinifera HOM05D005270 ORTHO05D006239 4.7e-150 535.0 397 70.0
HPP92_022434 Vanilla planifolia HOM05D005270 ORTHO05D006239 6.1e-150 534.6 397 69.0
ClCG01G003850 Citrullus lanatus HOM05D005270 ORTHO05D006239 8.0e-150 534.3 353 75.4
PGSC0003DMG400004791 Solanum tuberosum HOM05D005270 ORTHO05D006239 1.0e-149 533.9 398 68.1
Thecc.03G257000 Theobroma cacao HOM05D005270 ORTHO05D006239 1.0e-149 533.9 401 69.1
CAN.G1217.18 Capsicum annuum HOM05D000486 ORTHO05D000375 1.4e-149 533.5 396 68.2
Duzib068G0557 Durio zibethinus HOM05D005270 ORTHO05D006239 1.4e-149 533.5 397 70.0
MELO3C005559.2 Cucumis melo HOM05D005270 ORTHO05D006239 1.8e-149 533.1 348 75.6
Migut.E01048 Erythranthe guttata HOM05D005270 ORTHO05D006239 3.0e-149 532.3 395 69.4
TWI81G0718 Tripterygium wilfordii HOM05D005270 ORTHO05D006239 3.0e-149 532.3 353 74.8
Actinidia05188 Actinidia chinensis HOM05D005270 ORTHO05D006239 4.0e-149 531.9 397 67.5
Peaxi162Scf00002g00815 Petunia axillaris HOM05D005270 ORTHO05D006239 4.0e-149 531.9 397 68.5
Ca_25339_v3 Cicer arietinum L. HOM05D005270 ORTHO05D006239 5.2e-149 531.6 345 74.5
Sed0019529 Sechium edule HOM05D005270 ORTHO05D006239 5.2e-149 531.6 389 71.0
Glyma.05G056400 Glycine max HOM05D005270 ORTHO05D006239 8.8e-149 530.8 388 69.6
PSO170G6680 Papaver somniferum HOM05D005270 ORTHO05D006239 8.8e-149 530.8 401 68.1
Sc01g0009340 Simmondsia chinensis HOM05D005270 ORTHO05D006239 1.2e-148 530.4 394 68.0
Sopen08g027530 Solanum pennellii HOM05D005270 ORTHO05D006239 1.2e-148 530.4 398 67.6
Solyc08g079070.2 Solanum lycopersicum HOM05D005270 ORTHO05D006239 1.5e-148 530.0 398 67.6
arahy.Tifrunner.gnm1.ann1.9F7ELE Arachis hypogaea HOM05D005270 ORTHO05D006239 2.0e-148 529.6 347 74.6
CsaV3_5G003980 Cucumis sativus L. HOM05D005270 ORTHO05D006239 2.6e-148 529.3 348 75.0
Sabra01G0092800 Salix brachista HOM05D005270 ORTHO05D006239 5.7e-148 528.1 346 75.1
Lalb_Chr05g0225581 Lupinus albus HOM05D005270 ORTHO05D006239 1.3e-147 526.9 388 69.8
Medtr4g101620 Medicago truncatula HOM05D005270 ORTHO05D006239 2.2e-147 526.2 345 74.8
PSO017G6911 Papaver somniferum HOM05D005270 ORTHO05D006239 2.8e-147 525.8 393 69.0
Oeu038010.1 Olea europaea HOM05D005270 ORTHO05D006239 3.7e-147 525.4 398 68.8
arahy.Tifrunner.gnm1.ann1.VW53Z5 Arachis hypogaea HOM05D005270 ORTHO05D006239 4.8e-147 525.0 379 70.4
MSTRG.25537 Avicennia marina HOM05D005270 ORTHO05D006239 4.8e-147 525.0 397 67.3
Psat4g070360 Pisum sativum HOM05D005270 ORTHO05D006239 6.3e-147 524.6 391 68.8
SGA_v2.0_scaffold144G35994 Striga asiatica HOM05D005270 ORTHO05D003965 6.3e-147 524.6 396 67.7
Glyma.17G138600 Glycine max HOM05D005270 ORTHO05D006239 1.1e-146 523.9 398 67.8
Lj4g0020394 Lotus japonicus HOM05D005270 ORTHO05D006239 1.1e-146 523.9 350 74.0
unitig_0.g1234 Utricularia gibba HOM05D005270 ORTHO05D006239 1.1e-146 523.9 399 67.9
Dinv39103 Davidia involucrata HOM05D000201 ORTHO05D001515 2.4e-146 522.7 385 70.9
Rhsim07G0104300 Rhododendron simsii HOM05D005270 ORTHO05D006239 5.3e-146 521.5 397 67.5
SalBow1G0839 Salvia bowleyana HOM05D005270 ORTHO05D006239 1.6e-145 520.0 361 71.5
Aqoxy7G00723 Aquilegia oxysepala HOM05D005270 ORTHO05D006239 2.0e-145 519.6 391 66.2
TPR.G37612 Trifolium pratense HOM05D005270 ORTHO05D006239 2.7e-145 519.2 345 74.8
Lsat_1_v5_gn_6_90321 Lactuca sativa HOM05D005270 ORTHO05D006239 5.0e-144 515.0 362 69.9
HanXRQChr03g0087851 Helianthus annuus HOM05D005270 ORTHO05D006239 9.4e-143 510.8 371 67.9
Carub.0001s1190 Capsella rubella HOM05D005270 ORTHO05D006239 2.0e-140 503.1 348 71.3
THA.LOC104809459 Tarenaya hassleriana HOM05D005270 ORTHO05D006239 3.4e-140 502.3 347 70.6
ECA240G0014 Erigeron canadensis HOM05D000201 ORTHO05D006239 4.4e-140 501.9 394 64.0
Aa31LG1G2400 Aethionema arabicum HOM05D005270 ORTHO05D006239 5.7e-140 501.5 345 71.6
Thhalv10007790m.g Eutrema salsugineum HOM05D005270 ORTHO05D006239 1.3e-139 500.4 337 72.7
AL1G23510 Arabidopsis lyrata HOM05D005270 ORTHO05D006239 1.7e-139 500.0 337 72.4
CARHR012530 Cardamine hirsuta HOM05D005270 ORTHO05D006239 2.2e-139 499.6 346 71.7
Sp1g10840 Schrenkiella parvula HOM05D005270 ORTHO05D006239 6.3e-139 498.0 337 72.4
vmacro14106 Vaccinium macrocarpon HOM05D005270 ORTHO05D006239 1.8e-138 496.5 419 61.3
Nitab4.5_0009175g0010 Nicotiana tabacum HOM05D005270 ORTHO05D006239 3.1e-138 495.7 408 64.7
A06p09330 Brassica napus HOM05D005270 ORTHO05D006239 1.2e-137 493.8 408 64.0
BraA06t24120Z Brassica rapa HOM05D005270 ORTHO05D006239 1.2e-137 493.8 338 71.9
C05p11010 Brassica napus HOM05D005270 ORTHO05D006239 5.9e-137 491.5 408 63.7
BolC5t29844H Brassica oleracea HOM05D005270 ORTHO05D006239 1.3e-136 490.3 408 63.7
AUR62007475 Chenopodium quinoa HOM05D005270 ORTHO05D006239 1.1e-135 487.3 375 66.9
AT1G12230 Arabidopsis thaliana HOM05D005270 ORTHO05D006239 1.5e-135 486.9 369 66.4
Zm00001eb172680 Zea mays HOM05D005270 ORTHO05D006239 1.9e-135 486.5 386 64.2
AagrBONN_evm.TU.Sc2ySwM_369.586 Anthoceros agrestis HOM05D005270 ORTHO05D006239 4.7e-134 481.9 354 67.2
Cpa.g.sc29.127 Carica papaya HOM05D005270 ORTHO05D006239 8.0e-134 481.1 488 55.3
Nitab4.5_0000993g0070 Nicotiana tabacum HOM05D005270 ORTHO05D006239 9.8e-132 474.2 398 63.3
Phvul.003G218000 Phaseolus vulgaris HOM05D005270 ORTHO05D006239 2.8e-131 472.6 306 74.2
EL10Ac5g13010 Beta vulgaris HOM05D005270 ORTHO05D006239 3.7e-131 472.2 350 68.3
VMungo0251G3554 Vigna mungo HOM05D005270 ORTHO05D006239 1.4e-130 470.3 306 74.2
DCAR_006814 Daucus carota HOM05D005270 ORTHO05D006239 7.0e-130 468.0 347 68.6
Pp3c15_6350 Physcomitrium patens HOM05D005270 ORTHO05D006239 7.3e-127 458.0 337 66.8
Duzib205G1833 Durio zibethinus HOM05D005270 ORTHO05D006239 4.0e-125 452.2 400 61.5
COL.COLO4_37215 Corchorus olitorius HOM05D005270 ORTHO05D006239 1.4e-122 443.7 283 75.3
BcaC05g25195 Brassica carinata HOM05D005270 ORTHO05D006239 3.0e-112 409.5 337 62.9
SalBow1G5553 Salvia bowleyana HOM05D005270 ORTHO05D006239 5.1e-112 408.7 421 54.4
CBR_g37411 Chara braunii HOM05D005270 ORTHO05D006239 9.5e-111 404.4 340 58.8
CDE04G1696 Ceratophyllum demersum HOM05D005270 ORTHO05D006239 7.8e-105 384.8 213 91.5
Psat5g235160 Pisum sativum HOM05D005270 ORTHO05D006239 2.6e-76 290.0 341 50.7
Psat5g232960 Pisum sativum HOM05D005270 ORTHO05D006239 4.6e-73 279.3 256 58.6
Mapoly0029s0033 Marchantia polymorpha HOM05D005270 ORTHO05D006239 2.4e-69 266.9 191 68.6
Sed0011689 Sechium edule HOM05D005270 ORTHO05D006239 7.6e-68 261.9 184 73.4
Mapoly0029s0029 Marchantia polymorpha HOM05D005270 ORTHO05D006239 1.0e-64 251.5 203 59.1
Os08g0154300 Oryza sativa ssp. japonica HOM05D005270 ORTHO05D006239 1.8e-64 250.8 177 71.8
Gorai.N027100 Gossypium raimondii HOM05D005270 ORTHO05D006239 3.3e-63 246.5 160 72.5
CDE04G2727 Ceratophyllum demersum HOM05D005270 ORTHO05D006239 1.8e-56 224.2 205 62.4
Haze_07851 Corylus avellana HOM05D005270 ORTHO05D006239 2.4e-53 213.8 260 50.4
DCAR_004923 Daucus carota HOM05D005270 ORTHO05D006239 6.7e-48 195.7 230 49.1
Atru.chr9.1382 Acer truncatum HOM05D005270 ORTHO05D006239 3.1e-45 186.8 165 61.8
SEGI_36758 Sequoiadendron giganteum HOM05D005270 ORTHO05D006239 2.1e-41 174.1 141 64.5
Cre14.g630847 Chlamydomonas reinhardtii HOM05D005270 ORTHO05D006239 6.1e-41 172.6 353 35.4
SEGI_05849 Sequoiadendron giganteum HOM05D005270 ORTHO05D006239 6.7e-40 169.1 100 80.0
AUR62039933 Chenopodium quinoa HOM05D005270 ORTHO05D006239 4.4e-39 166.4 110 70.9
Atru.chr9.1383 Acer truncatum HOM05D005270 ORTHO05D006239 9.1e-37 158.7 110 67.3
Cre01.g032650 Chlamydomonas reinhardtii HOM05D005270 ORTHO05D006239 1.7e-35 154.5 306 34.3
SEGI_03700 Sequoiadendron giganteum HOM05D005270 ORTHO05D006239 9.4e-34 148.7 110 62.7
PRCOL_00004111 Prasinoderma coloniale HOM05D005270 ORTHO05D006239 1.5e-31 141.4 259 33.6
MCO13G140 Micromonas commoda HOM05D005270 ORTHO05D006239 9.7e-31 138.7 274 32.1
FAN11G3467 Fragaria x ananassa HOM05D005270 ORTHO05D006239 5.9e-28 129.4 160 47.5
FAN28G1011 Fragaria x ananassa HOM05D005270 ORTHO05D006239 7.7e-28 129.0 160 47.5
Gorai.003G169200 Gossypium raimondii HOM05D005270 ORTHO05D006239 1.1e-26 125.2 141 51.8
PRCOL_00004269 Prasinoderma coloniale HOM05D005270 ORTHO05D006239 1.4e-21 108.2 182 35.2
RcHm_v2.0_Chr6g0270571 Rosa chinensis HOM05D005270 ORTHO05D006239 3.1e-21 107.1 78 67.9
RcHm_v2.0_Chr6g0254981 Rosa chinensis HOM05D005270 ORTHO05D006239 5.9e-20 102.8 65 75.4
Ca_29061_v3 Cicer arietinum L. HOM05D001546 ORTHO05D002908 5.0e-19 99.8 176 34.1
MBI03_g13472_MAGBIO Magnolia biondii HOM05D005270 ORTHO05D006239 6.6e-19 99.4 70 68.6
CAN.G1488.1 Capsicum annuum HOM05D005270 ORTHO05D006239 5.2e-16 89.7 129 42.6
FAN04G2435 Fragaria x ananassa HOM05D005270 ORTHO05D006239 5.2e-16 89.7 60 73.3
GSVIVG01028518001 Vitis vinifera HOM05D005270 ORTHO05D006239 5.7e-15 86.3 49 79.6
CAN.G605.8 Capsicum annuum HOM05D005270 ORTHO05D006239 9.8e-15 85.5 51 74.5
BcaC07g38600 Brassica carinata HOM05D000238 ORTHO05D037998 1.3e-14 85.1 48 85.4
PRCOL_00005862 Prasinoderma coloniale HOM05D005270 ORTHO05D333221 4.9e-14 83.2 274 26.6
BcaC07g41719 Brassica carinata HOM05D005270 ORTHO05D039702 1.4e-13 81.6 89 52.8
BolC8t52299H Brassica oleracea HOM05D005270 ORTHO05D039702 1.4e-13 81.6 89 52.8
CSS0018551 Camellia sinensis var. sinensis HOM05D000691 ORTHO05D000378 1.4e-13 81.6 83 50.6
MBI14_g06401_MAGBIO Magnolia biondii HOM05D005270 ORTHO05D006239 3.2e-13 80.5 69 60.9
MBI15_g47610_MAGBIO Magnolia biondii HOM05D001260 ORTHO05D004134 7.0e-13 79.3 49 79.6
FAN26G1714 Fragaria x ananassa HOM05D004635 ORTHO05D005899 4.5e-12 76.6 53 69.8
FAN14G3934 Fragaria x ananassa HOM05D000617 ORTHO05D000478 5.9e-12 76.3 55 67.3
CAN.G1143.36 Capsicum annuum HOM05D001836 ORTHO05D001519 1.0e-11 75.5 67 56.7
FAN23G0587 Fragaria x ananassa HOM05D016072 ORTHO05D006239 1.3e-11 75.1 52 69.2
SalBow1G3426 Salvia bowleyana HOM05D005270 ORTHO05D006239 3.9e-11 73.6 51 60.8
FAN26G2512 Fragaria x ananassa HOM05D005270 ORTHO05D006239 1.9e-10 71.2 52 67.3
FAN10G1808 Fragaria x ananassa HOM05D016072 ORTHO05D006239 7.3e-10 69.3 48 68.8
FAN23G1777 Fragaria x ananassa HOM05D016072 ORTHO05D006239 7.3e-10 69.3 48 68.8
MBI16_g06311_MAGBIO Magnolia biondii HOM05D001260 ORTHO05D004134 4.0e-08 63.5 37 86.5
MBI18_g46779_MAGBIO Magnolia biondii HOM05D005270 ORTHO05D004199 1.2e-07 62.0 39 79.5
MCO07G268 Micromonas commoda HOM05D019552 ORTHO05D021310 5.8e-07 59.7 136 27.2


User provided reference genes

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