Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE12G0366 Ceratophyllum demersum HOM05D004272 ORTHO05D005020 5.8e-144 514.2 263 100.0
Nn5g27830 Nelumbo nucifera HOM05D004272 ORTHO05D005020 3.8e-63 245.7 232 54.3
THA.LOC104800104 Tarenaya hassleriana HOM05D004272 ORTHO05D005020 8.3e-58 228.0 261 46.7
GSVIVG01034890001 Vitis vinifera HOM05D004272 ORTHO05D005020 4.1e-57 225.7 259 45.9
Thecc.08G200200 Theobroma cacao HOM05D004272 ORTHO05D005020 4.6e-56 222.2 254 46.5
Gohir.A09G116800 Gossypium hirsutum HOM05D004272 ORTHO05D005020 1.0e-55 221.1 254 44.9
Prupe.8G052200 Prunus persica HOM05D004272 ORTHO05D005020 6.6e-55 218.4 251 47.4
CiPaw.16G063800 Carya illinoinensis HOM05D004272 ORTHO05D005020 1.5e-54 217.2 254 44.9
Hma1.2p1_0510F.1_g168790 Hydrangea macrophylla HOM05D004272 ORTHO05D005020 1.5e-54 217.2 251 45.4
Aa31LG4G8760 Aethionema arabicum HOM05D004272 ORTHO05D005020 2.5e-54 216.5 254 45.3
Sp5g26920 Schrenkiella parvula HOM05D004272 ORTHO05D005020 2.5e-54 216.5 255 43.9
SpUn0020_0060 Schrenkiella parvula HOM05D004272 ORTHO05D005020 2.5e-54 216.5 255 43.9
Cpa.g.sc64.134 Carica papaya HOM05D004272 ORTHO05D005020 4.3e-54 215.7 260 45.0
FAN20G0830 Fragaria x ananassa HOM05D004272 ORTHO05D005020 4.3e-54 215.7 251 46.2
MD10G1045300 Malus domestica HOM05D004272 ORTHO05D005020 4.3e-54 215.7 248 47.2
QL02p034274 Quercus lobata HOM05D004272 ORTHO05D005020 4.3e-54 215.7 247 45.3
Thhalv10018624m.g Eutrema salsugineum HOM05D004272 ORTHO05D005020 9.5e-54 214.5 285 41.1
Gorai.006G131400 Gossypium raimondii HOM05D004272 ORTHO05D005020 9.5e-54 214.5 254 44.1
FvH4_2g12360 Fragaria vesca HOM05D004272 ORTHO05D005020 1.2e-53 214.2 251 45.8
Sed0022323 Sechium edule HOM05D004272 ORTHO05D005020 1.6e-53 213.8 253 46.6
Carub.0002s1862 Capsella rubella HOM05D004272 ORTHO05D005020 2.1e-53 213.4 254 43.3
FAN24G2414 Fragaria x ananassa HOM05D004272 ORTHO05D005020 2.1e-53 213.4 249 45.8
Sabra13G0097600 Salix brachista HOM05D004272 ORTHO05D005020 2.1e-53 213.4 256 43.0
Haze_17897 Corylus avellana HOM05D004272 ORTHO05D005020 3.6e-53 212.6 262 43.9
Potri.013G115400 Populus trichocarpa HOM05D004272 ORTHO05D005020 3.6e-53 212.6 279 40.9
MELO3C018159.2 Cucumis melo HOM05D004272 ORTHO05D005020 4.7e-53 212.2 254 45.3
AL2G31440 Arabidopsis lyrata HOM05D004272 ORTHO05D005020 8.0e-53 211.5 254 42.5
A07p38020 Brassica napus HOM05D004272 ORTHO05D005020 8.0e-53 211.5 258 43.0
MD05G1039700 Malus domestica HOM05D004272 ORTHO05D005020 8.0e-53 211.5 249 45.4
Gohir.D09G113700 Gossypium hirsutum HOM05D004272 ORTHO05D005020 1.1e-52 211.1 254 43.7
C06p45930 Brassica napus HOM05D004272 ORTHO05D005020 1.4e-52 210.7 257 43.6
BcaC08g46620 Brassica carinata HOM05D004272 ORTHO05D005020 1.8e-52 210.3 257 43.6
BolC6t39646H Brassica oleracea HOM05D004272 ORTHO05D005020 1.8e-52 210.3 257 43.6
Manes.18G099100 Manihot esculenta HOM05D004272 ORTHO05D005020 1.8e-52 210.3 254 43.7
BraA07t31367Z Brassica rapa HOM05D004272 ORTHO05D005020 2.3e-52 209.9 258 43.0
AT1G71860 Arabidopsis thaliana HOM05D004272 ORTHO05D005020 3.1e-52 209.5 256 43.8
RcHm_v2.0_Chr6g0272381 Rosa chinensis HOM05D004272 ORTHO05D005020 3.1e-52 209.5 251 45.0
CiPaw.15G083400 Carya illinoinensis HOM05D004272 ORTHO05D005020 4.0e-52 209.1 279 42.3
FAN27G2909 Fragaria x ananassa HOM05D004272 ORTHO05D005020 4.0e-52 209.1 251 45.0
Lalb_Chr06g0161911 Lupinus albus HOM05D004272 ORTHO05D005020 4.0e-52 209.1 251 43.4
PSO170G2262 Papaver somniferum HOM05D004272 ORTHO05D005020 6.8e-52 208.4 279 41.9
CANSAT25G2208 Cannabis sativa HOM05D004272 ORTHO05D005020 1.2e-51 207.6 253 41.1
Sc01g0001660 Simmondsia chinensis HOM05D004272 ORTHO05D005020 1.2e-51 207.6 254 43.7
arahy.Tifrunner.gnm1.ann1.CBRY2G Arachis hypogaea HOM05D004272 ORTHO05D005020 2.0e-51 206.8 279 41.6
Ciclev10001727m.g Citrus clementina HOM05D004272 ORTHO05D005020 2.0e-51 206.8 252 43.7
arahy.Tifrunner.gnm1.ann1.6Q1IL7 Arachis hypogaea HOM05D004272 ORTHO05D005020 2.6e-51 206.5 279 41.6
TAR381G1009 Trochodendron aralioides HOM05D004272 ORTHO05D005020 4.4e-51 205.7 245 44.9
Dinv12903 Davidia involucrata HOM05D004272 ORTHO05D005020 1.3e-50 204.1 256 42.6
BcaC08g46618 Brassica carinata HOM05D004272 ORTHO05D005020 1.7e-50 203.8 258 42.6
HPP92_003132 Vanilla planifolia HOM05D004272 ORTHO05D005020 1.7e-50 203.8 253 41.1
Lj5g0022070 Lotus japonicus HOM05D004272 ORTHO05D005020 2.2e-50 203.4 257 42.0
Sopen11g008950 Solanum pennellii HOM05D004272 ORTHO05D005020 3.7e-50 202.6 243 44.0
Ca_10628_v3 Cicer arietinum L. HOM05D004272 ORTHO05D005020 8.3e-50 201.4 252 42.5
Solyc11g016990.3 Solanum lycopersicum HOM05D004272 ORTHO05D005020 8.3e-50 201.4 243 43.6
Cc00_g04120 Coffea canephora HOM05D004272 ORTHO05D005020 1.4e-49 200.7 246 44.7
CsaV3_7G024250 Cucumis sativus L. HOM05D004272 ORTHO05D005020 1.4e-49 200.7 254 44.1
ATR0687G002 Amborella trichopoda HOM05D004272 ORTHO05D005020 1.9e-49 200.3 247 42.5
Aqoxy6G00139 Aquilegia oxysepala HOM05D004272 ORTHO05D005020 1.9e-49 200.3 256 43.8
Phvul.007G087900 Phaseolus vulgaris HOM05D004272 ORTHO05D005020 1.9e-49 200.3 254 42.1
EL10Ac1g00062 Beta vulgaris HOM05D004272 ORTHO05D005020 3.2e-49 199.5 258 42.6
Duzib116G0407 Durio zibethinus HOM05D004272 ORTHO05D005020 3.2e-49 199.5 298 39.3
Lsat_1_v5_gn_5_157280 Lactuca sativa HOM05D004272 ORTHO05D005020 3.2e-49 199.5 295 42.4
Oeu004773.1 Olea europaea HOM05D004272 ORTHO05D005020 4.1e-49 199.1 266 42.9
VMungo0720G1438 Vigna mungo HOM05D004272 ORTHO05D005020 4.1e-49 199.1 254 41.3
Medtr1g096990 Medicago truncatula HOM05D004272 ORTHO05D005020 5.4e-49 198.7 247 42.1
Eucgr.F04145 Eucalyptus grandis HOM05D004272 ORTHO05D005020 7.0e-49 198.4 261 40.2
Rhsim11G0061700 Rhododendron simsii HOM05D004272 ORTHO05D005020 7.0e-49 198.4 304 41.4
Rhsim11G0063200 Rhododendron simsii HOM05D004272 ORTHO05D005020 7.0e-49 198.4 304 41.4
vmacro12508 Vaccinium macrocarpon HOM05D004272 ORTHO05D005020 7.8e-48 194.9 254 42.1
CSS0015299 Camellia sinensis var. sinensis HOM05D004272 ORTHO05D005020 1.0e-47 194.5 247 42.1
ClCG09G010370 Citrullus lanatus HOM05D004272 ORTHO05D005020 1.0e-47 194.5 253 42.3
Glyma.20G173700 Glycine max HOM05D004272 ORTHO05D005020 1.7e-47 193.7 254 40.9
HanXRQChr13g0388201 Helianthus annuus HOM05D004272 ORTHO05D005020 3.0e-47 193.0 256 42.6
Nitab4.5_0006059g0040 Nicotiana tabacum HOM05D004272 ORTHO05D005020 3.0e-47 193.0 259 41.7
TPR.G15693 Trifolium pratense HOM05D004272 ORTHO05D005020 3.0e-47 193.0 282 39.0
Oeu030010.1 Olea europaea HOM05D004272 ORTHO05D005020 3.9e-47 192.6 254 42.5
Peaxi162Scf00268g01426 Petunia axillaris HOM05D004272 ORTHO05D005020 3.9e-47 192.6 246 41.9
Glyma.10G218100 Glycine max HOM05D004272 ORTHO05D005020 6.6e-47 191.8 254 40.2
Hund16809 Selenicereus undatus HOM05D004272 ORTHO05D005020 6.6e-47 191.8 256 42.6
MELO3C023674.2 Cucumis melo HOM05D004272 ORTHO05D005020 1.5e-46 190.7 240 44.2
PSO782G4024 Papaver somniferum HOM05D004272 ORTHO05D005020 1.9e-46 190.3 281 39.5
SalBow6G0059 Salvia bowleyana HOM05D004272 ORTHO05D005020 1.9e-46 190.3 244 43.0
SalBow6G4901 Salvia bowleyana HOM05D004272 ORTHO05D005020 1.9e-46 190.3 244 43.0
Rhsim06G0099300 Rhododendron simsii HOM05D004272 ORTHO05D005020 2.1e-45 186.8 289 37.7
Actinidia02597 Actinidia chinensis HOM05D004272 ORTHO05D005020 4.7e-45 185.7 252 42.5
Hund27072 Selenicereus undatus HOM05D004272 ORTHO05D005020 6.2e-45 185.3 245 41.2
DCAR_010068 Daucus carota HOM05D004272 ORTHO05D005020 8.1e-45 184.9 255 40.8
Migut.N03339 Erythranthe guttata HOM05D004272 ORTHO05D005020 1.4e-44 184.1 245 41.6
Atru.chr13.1851 Acer truncatum HOM05D004272 ORTHO05D005020 1.8e-44 183.7 284 38.4
PSO170G2167 Papaver somniferum HOM05D004272 ORTHO05D005020 5.2e-44 182.2 256 41.4
Sopen06g023970 Solanum pennellii HOM05D004272 ORTHO05D005020 1.5e-43 180.6 259 39.4
Ah.05g177840 Amaranthus hybridus HOM05D004272 ORTHO05D005020 4.4e-43 179.1 200 47.0
Solyc06g065480.4 Solanum lycopersicum HOM05D004272 ORTHO05D005020 9.9e-43 177.9 259 39.0
ECA248G0749 Erigeron canadensis HOM05D004272 ORTHO05D005020 1.3e-42 177.6 256 41.0
Migut.C01228 Erythranthe guttata HOM05D004272 ORTHO05D005020 3.7e-42 176.0 240 42.1
Psat6g189360 Pisum sativum HOM05D004272 ORTHO05D005020 8.3e-42 174.9 240 40.0
unitig_61.g26072 Utricularia gibba HOM05D004272 ORTHO05D005020 1.2e-40 171.0 245 38.4
CARHR289070 Cardamine hirsuta HOM05D004272 ORTHO05D005020 4.6e-40 169.1 203 42.4
Nitab4.5_0000159g0070 Nicotiana tabacum HOM05D004272 ORTHO05D005020 1.0e-39 167.9 214 43.9
Lj7C302G8 Lonicera japonica HOM05D004272 ORTHO05D005020 1.3e-39 167.5 319 34.5
AUR62023587 Chenopodium quinoa HOM05D004272 ORTHO05D005020 2.3e-39 166.8 206 43.2
CAN.G61.12 Capsicum annuum HOM05D004272 ORTHO05D005020 3.0e-39 166.4 193 44.0
Hund16808 Selenicereus undatus HOM05D004272 ORTHO05D005020 1.9e-38 163.7 226 42.5
AUR62004668 Chenopodium quinoa HOM05D004272 ORTHO05D005020 3.3e-38 162.9 195 44.6
RcHm_v2.0_Chr3g0456471 Rosa chinensis HOM05D004272 ORTHO05D005020 3.3e-38 162.9 253 41.1
Nitab4.5_0003518g0050 Nicotiana tabacum HOM05D004272 ORTHO05D005020 2.1e-37 160.2 208 42.8
RcHm_v2.0_Chr7g0181531 Rosa chinensis HOM05D004272 ORTHO05D005020 4.7e-37 159.1 246 41.1
TWI60G0092 Tripterygium wilfordii HOM05D004272 ORTHO05D005020 6.2e-37 158.7 212 42.5
DCAR_014268 Daucus carota HOM05D004272 ORTHO05D005020 1.1e-36 157.9 267 39.0
HanXRQChr13g0388211 Helianthus annuus HOM05D004272 ORTHO05D005020 5.2e-36 155.6 257 35.0
FvH4_5g14850 Fragaria vesca HOM05D004272 ORTHO05D005020 2.0e-35 153.7 246 41.9
FAN18G3209 Fragaria x ananassa HOM05D004272 ORTHO05D005020 2.6e-35 153.3 246 41.5
CAN.G199.25 Capsicum annuum HOM05D004272 ORTHO05D005020 3.4e-35 152.9 207 40.6
FAN08G2250 Fragaria x ananassa HOM05D004272 ORTHO05D005020 4.9e-34 149.1 246 41.1
FAN13G2363 Fragaria x ananassa HOM05D004272 ORTHO05D005020 4.9e-34 149.1 248 40.3
MD09G1287400 Malus domestica HOM05D004272 ORTHO05D005020 5.4e-33 145.6 272 36.0
ECA248G3752 Erigeron canadensis HOM05D004272 ORTHO05D005020 1.2e-32 144.4 259 35.1
Nitab4.5_0029014g0010 Nicotiana tabacum HOM05D004272 ORTHO05D005020 2.1e-29 133.7 172 43.0
SMO347G0125 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 4.7e-29 132.5 244 34.4
Dinv41680 Davidia involucrata HOM05D004272 ORTHO05D005020 1.8e-28 130.6 101 58.4
SGA_v2.0_scaffold149G36610 Striga asiatica HOM05D004272 ORTHO05D005020 1.8e-28 130.6 341 29.0
Prupe.1G402600 Prunus persica HOM05D004272 ORTHO05D005020 6.9e-28 128.6 254 36.6
vmacro00781 Vaccinium macrocarpon HOM05D004272 ORTHO05D005020 1.2e-27 127.9 348 29.9
Manes.02G190000 Manihot esculenta HOM05D004272 ORTHO05D005020 1.3e-26 124.4 99 55.6
arahy.Tifrunner.gnm1.ann1.E3548W Arachis hypogaea HOM05D004272 ORTHO05D005020 1.7e-26 124.0 227 33.9
Os12g0174800 Oryza sativa ssp. japonica HOM05D004272 ORTHO05D005020 1.2e-24 117.9 239 35.1
Pp3c13_6130 Physcomitrium patens HOM05D004272 ORTHO05D005020 3.9e-23 112.8 249 31.3
Pp3c3_2290 Physcomitrium patens HOM05D004272 ORTHO05D005020 3.3e-22 109.8 249 31.7
SHI09047 Sapria himalayana HOM05D004272 ORTHO05D005020 9.6e-22 108.2 209 33.0
Zm00001eb138930 Zea mays HOM05D004272 ORTHO05D005020 1.6e-21 107.5 254 30.7
SGA_v2.0_scaffold483G52343 Striga asiatica HOM05D004272 ORTHO05D005020 4.0e-20 102.8 84 59.5
SEGI_33079 Sequoiadendron giganteum HOM05D004272 ORTHO05D005020 6.9e-20 102.1 98 48.0
TPR.G15698 Trifolium pratense HOM05D004272 ORTHO05D005020 3.8e-18 96.3 55 74.5
Potri.019G086001 Populus trichocarpa HOM05D004272 ORTHO05D005020 8.4e-18 95.1 88 47.7
Mapoly0167s0026 Marchantia polymorpha HOM05D004272 ORTHO05D005020 1.2e-16 91.3 257 30.4
Zm00001eb091350 Zea mays HOM05D004272 ORTHO05D005020 1.1e-14 84.7 187 32.6
Os11g0180200 Oryza sativa ssp. japonica HOM05D004272 ORTHO05D005020 2.1e-13 80.5 102 45.1
CBR_g17924 Chara braunii HOM05D004272 ORTHO05D005020 4.8e-13 79.3 101 40.6
Cre12.g524450 Chlamydomonas reinhardtii HOM05D004272 ORTHO05D005020 4.8e-13 79.3 205 27.8
Haze_26549 Corylus avellana HOM05D004272 ORTHO05D005020 1.1e-12 78.2 247 26.7
AagrBONN_evm.TU.Sc2ySwM_228.1486 Anthoceros agrestis HOM05D004272 ORTHO05D005020 3.1e-12 76.6 189 27.5
CARHR290880 Cardamine hirsuta HOM05D004272 ORTHO05D005020 1.5e-11 74.3 76 47.4
PGSC0003DMG400024543 Solanum tuberosum HOM05D004272 ORTHO05D005020 9.9e-11 71.6 162 29.6
Haze_26606 Corylus avellana HOM05D004272 ORTHO05D005020 6.4e-10 68.9 190 28.4
CBR_g49956 Chara braunii HOM05D004272 ORTHO05D005020 5.5e-09 65.9 107 35.5
Cre09.g389949 Chlamydomonas reinhardtii HOM05D004272 ORTHO05D005020 7.4e-06 55.5 51 47.1


User provided reference genes

Program Settings