Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE12G0235 Ceratophyllum demersum HOM05D007285 ORTHO05D009224 3.9e-64 248.1 131 100.0
CDE01G0551 Ceratophyllum demersum HOM05D007285 ORTHO05D009224 8.1e-30 134.0 109 70.6
PSO541G0778 Papaver somniferum HOM05D007285 ORTHO05D009224 8.2e-14 80.9 110 45.5
arahy.Tifrunner.gnm1.ann1.J7N80D Arachis hypogaea HOM05D007285 ORTHO05D009224 4.5e-12 75.1 106 42.5
arahy.Tifrunner.gnm1.ann1.VSLT1W Arachis hypogaea HOM05D007285 ORTHO05D009224 4.5e-12 75.1 106 42.5
Nn1g04136 Nelumbo nucifera HOM05D007285 ORTHO05D009224 4.5e-12 75.1 100 48.0
Zm00001eb305570 Zea mays HOM05D007285 ORTHO05D009224 2.2e-11 72.8 105 45.7
Lalb_Chr15g0089751 Lupinus albus HOM05D007285 ORTHO05D009224 2.9e-11 72.4 105 41.9
VMungo0251G0987 Vigna mungo HOM05D007285 ORTHO05D009224 1.4e-10 70.1 99 46.5
Ca_18554_v3 Cicer arietinum L. HOM05D007285 ORTHO05D009224 2.5e-10 69.3 106 45.3
Ah.09g237440 Amaranthus hybridus HOM05D007285 ORTHO05D009224 4.2e-10 68.6 93 44.1
ATR0763G085 Amborella trichopoda HOM05D007285 ORTHO05D009224 5.5e-10 68.2 103 42.7
Lj4g0016922 Lotus japonicus HOM05D007285 ORTHO05D009224 5.5e-10 68.2 102 47.1
unitig_27.g24965 Utricularia gibba HOM05D007285 ORTHO05D009224 7.2e-10 67.8 101 41.6
Cc02_g13540 Coffea canephora HOM05D007285 ORTHO05D009224 1.2e-09 67.0 92 46.7
Actinidia07587 Actinidia chinensis HOM05D007285 ORTHO05D009224 1.6e-09 66.6 93 46.2
EL10Ac8g20395 Beta vulgaris HOM05D007285 ORTHO05D009224 2.1e-09 66.2 93 45.2
AUR62017028 Chenopodium quinoa HOM05D007285 ORTHO05D009224 2.1e-09 66.2 93 45.2
Dinv17325 Davidia involucrata HOM05D007285 ORTHO05D009224 2.1e-09 66.2 89 47.2
Hma1.2p1_0208F.1_g088230 Hydrangea macrophylla HOM05D007285 ORTHO05D009224 2.1e-09 66.2 96 45.8
SGA_v2.0_scaffold100G29692 Striga asiatica HOM05D007285 ORTHO05D009224 2.1e-09 66.2 97 43.3
HPP92_007016 Vanilla planifolia HOM05D007285 ORTHO05D009224 2.1e-09 66.2 107 42.1
Atru.chr10.1858 Acer truncatum HOM05D007285 ORTHO05D009224 2.7e-09 65.9 94 46.8
Nitab4.5_0005745g0020 Nicotiana tabacum HOM05D007285 ORTHO05D009224 3.5e-09 65.5 106 41.5
Phvul.002G229600 Phaseolus vulgaris HOM05D007285 ORTHO05D009224 4.6e-09 65.1 99 43.4
TAR626G1757 Trochodendron aralioides HOM05D007285 ORTHO05D009224 4.6e-09 65.1 102 44.1
BolC3t19748H Brassica oleracea HOM05D007285 ORTHO05D009224 1.0e-08 63.9 96 41.7
ClCG03G008150 Citrullus lanatus HOM05D007285 ORTHO05D009224 1.0e-08 63.9 100 44.0
Medtr4g088680 Medicago truncatula HOM05D007285 ORTHO05D009224 1.0e-08 63.9 105 40.0
Hund23773 Selenicereus undatus HOM05D007285 ORTHO05D009224 1.0e-08 63.9 109 42.2
Dinv40575 Davidia involucrata HOM05D007285 ORTHO05D009224 1.3e-08 63.5 101 43.6
Potri.004G045400 Populus trichocarpa HOM05D007285 ORTHO05D009224 1.3e-08 63.5 99 42.4
SalBow8G5072 Salvia bowleyana HOM05D007285 ORTHO05D009224 1.3e-08 63.5 93 45.2
TPR.G16329 Trifolium pratense HOM05D007285 ORTHO05D009224 1.3e-08 63.5 105 41.9
Rhsim02G0132100 Rhododendron simsii HOM05D007285 ORTHO05D009224 1.8e-08 63.2 93 44.1
Sed0001788 Sechium edule HOM05D007285 ORTHO05D009224 1.8e-08 63.2 108 41.7
Glyma.07G198400 Glycine max HOM05D007285 ORTHO05D009224 2.3e-08 62.8 98 44.9
HanXRQChr14g0435131 Helianthus annuus HOM05D007285 ORTHO05D009224 2.3e-08 62.8 99 45.5
Aa31LG6G10160 Aethionema arabicum HOM05D007285 ORTHO05D009224 3.0e-08 62.4 101 40.6
Carub.0001s2669 Capsella rubella HOM05D007285 ORTHO05D009224 3.0e-08 62.4 101 38.6
COL.COLO4_31450 Corchorus olitorius HOM05D007285 ORTHO05D009224 3.0e-08 62.4 93 44.1
CsaV3_1G012400 Cucumis sativus L. HOM05D007285 ORTHO05D009224 3.0e-08 62.4 104 41.3
Lsat_1_v5_gn_4_52261 Lactuca sativa HOM05D007285 ORTHO05D009224 3.0e-08 62.4 101 42.6
A09p37820 Brassica napus HOM05D007285 ORTHO05D009224 3.9e-08 62.0 90 43.3
BraA09t39294Z Brassica rapa HOM05D007285 ORTHO05D009224 3.9e-08 62.0 90 43.3
CARHR027740 Cardamine hirsuta HOM05D007285 ORTHO05D009224 5.1e-08 61.6 93 40.9
Ciclev10017252m.g Citrus clementina HOM05D007285 ORTHO05D009224 5.1e-08 61.6 93 44.1
Psat7g114520 Pisum sativum HOM05D007285 ORTHO05D009224 5.1e-08 61.6 100 44.0
Glyma.13G178000 Glycine max HOM05D007285 ORTHO05D009224 6.7e-08 61.2 89 46.1
MD00G1116000 Malus domestica HOM05D007285 ORTHO05D009224 6.7e-08 61.2 96 40.6
RcHm_v2.0_Chr5g0008721 Rosa chinensis HOM05D007285 ORTHO05D009224 6.7e-08 61.2 94 40.4
Solyc02g078010.4 Solanum lycopersicum HOM05D007285 ORTHO05D009224 6.7e-08 61.2 111 37.8
BcaB07g32433 Brassica carinata HOM05D007285 ORTHO05D009224 8.7e-08 60.8 94 40.4
CAN.G529.14 Capsicum annuum HOM05D007285 ORTHO05D009224 8.7e-08 60.8 100 39.0
Migut.M01131 Erythranthe guttata HOM05D007285 ORTHO05D009224 8.7e-08 60.8 92 42.4
Sed0014393 Sechium edule HOM05D007285 ORTHO05D009224 8.7e-08 60.8 100 41.0
Sopen02g022850 Solanum pennellii HOM05D007285 ORTHO05D009224 8.7e-08 60.8 94 41.5
AL1G41800 Arabidopsis lyrata HOM05D007285 ORTHO05D009224 1.1e-07 60.5 96 38.5
AT1G28250 Arabidopsis thaliana HOM05D007285 ORTHO05D009224 1.1e-07 60.5 102 36.3
CiPaw.09G061300 Carya illinoinensis HOM05D007285 ORTHO05D009224 1.1e-07 60.5 102 41.2
Gohir.D06G133300 Gossypium hirsutum HOM05D007285 ORTHO05D009224 1.1e-07 60.5 95 41.1
Gorai.010G155100 Gossypium raimondii HOM05D007285 ORTHO05D009224 1.1e-07 60.5 95 41.1
MD10G1292600 Malus domestica HOM05D007285 ORTHO05D009224 1.1e-07 60.5 96 40.6
TWI38G2229 Tripterygium wilfordii HOM05D007285 ORTHO05D009224 1.1e-07 60.5 93 40.9
Actinidia26129 Actinidia chinensis HOM05D007285 ORTHO05D009224 1.5e-07 60.1 93 44.1
FAN16G1611 Fragaria x ananassa HOM05D007285 ORTHO05D009224 1.5e-07 60.1 94 39.4
FAN21G1653 Fragaria x ananassa HOM05D007285 ORTHO05D009224 1.5e-07 60.1 94 39.4
Prupe.4G049200 Prunus persica HOM05D007285 ORTHO05D009224 1.5e-07 60.1 94 40.4
Sc05g0007570 Simmondsia chinensis HOM05D007285 ORTHO05D009224 1.5e-07 60.1 106 38.7
C05p27060 Brassica napus HOM05D007285 ORTHO05D009224 1.9e-07 59.7 89 42.7
FvH4_3g08990 Fragaria vesca HOM05D007285 ORTHO05D009224 1.9e-07 59.7 94 39.4
Gohir.A06G129300 Gossypium hirsutum HOM05D007285 ORTHO05D009224 2.5e-07 59.3 95 41.1
BcaC05g26830 Brassica carinata HOM05D007285 ORTHO05D009224 3.3e-07 58.9 89 41.6
DCAR_008032 Daucus carota HOM05D007285 ORTHO05D009224 3.3e-07 58.9 92 43.5
Eucgr.E03264 Eucalyptus grandis HOM05D007285 ORTHO05D009224 3.3e-07 58.9 99 40.4
FAN25G3510 Fragaria x ananassa HOM05D007285 ORTHO05D009224 5.7e-07 58.2 93 38.7
Peaxi162Scf00623g00519 Petunia axillaris HOM05D007285 ORTHO05D009224 5.7e-07 58.2 102 40.2
MSTRG.7339 Avicennia marina HOM05D007285 ORTHO05D009224 7.4e-07 57.8 100 38.0
CSS0032734 Camellia sinensis var. sinensis HOM05D007285 ORTHO05D009224 7.4e-07 57.8 93 40.9
SEGI_38595 Sequoiadendron giganteum HOM05D007285 ORTHO05D009224 7.4e-07 57.8 100 34.0
CANSAT35G0751 Cannabis sativa HOM05D007285 ORTHO05D009224 1.3e-06 57.0 105 37.1
Thhalv10009792m.g Eutrema salsugineum HOM05D007285 ORTHO05D009224 1.3e-06 57.0 110 37.3
THA.LOC104820545 Tarenaya hassleriana HOM05D007285 ORTHO05D009224 1.3e-06 57.0 94 40.4
Manes.17G046800 Manihot esculenta HOM05D007285 ORTHO05D009224 2.2e-06 56.2 93 41.9
TWI63G1057 Tripterygium wilfordii HOM05D007285 ORTHO05D009224 2.2e-06 56.2 93 40.9
PGR042G2867 Punica granatum HOM05D007285 ORTHO05D009224 2.8e-06 55.8 99 39.4
Thecc.06G185100 Theobroma cacao HOM05D007285 ORTHO05D009224 2.8e-06 55.8 94 40.4


User provided reference genes

Program Settings