Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE12G0224 Ceratophyllum demersum HOM05D005050 ORTHO05D006198 9.2e-221 770.0 412 100.0
CDE01G0517 Ceratophyllum demersum HOM05D005050 ORTHO05D006198 5.8e-183 644.4 420 85.5
TAR628G0295 Trochodendron aralioides HOM05D005050 ORTHO05D006198 3.4e-130 469.2 416 66.6
Actinidia39062 Actinidia chinensis HOM05D005050 ORTHO05D006198 1.8e-123 446.8 418 64.4
MBI06_g01048_MAGBIO Magnolia biondii HOM05D005050 ORTHO05D006198 1.8e-123 446.8 412 63.6
Dinv19345 Davidia involucrata HOM05D005050 ORTHO05D006198 1.1e-120 437.6 409 64.5
CSS0001826 Camellia sinensis var. sinensis HOM05D005050 ORTHO05D006198 3.1e-120 436.0 422 63.0
Ciclev10001338m.g Citrus clementina HOM05D005050 ORTHO05D006198 3.5e-119 432.6 410 62.7
GSVIVG01029689001 Vitis vinifera HOM05D005050 ORTHO05D006198 5.9e-119 431.8 424 60.4
Thecc.02G041900 Theobroma cacao HOM05D005050 ORTHO05D006198 1.0e-118 431.0 414 62.3
Gorai.002G001300 Gossypium raimondii HOM05D005050 ORTHO05D006198 2.3e-118 429.9 417 61.6
Duzib052G0527 Durio zibethinus HOM05D005050 ORTHO05D006198 6.6e-118 428.3 408 63.0
Nn1g08554 Nelumbo nucifera HOM05D005050 ORTHO05D006198 6.6e-118 428.3 368 67.4
Sabra01G0160800 Salix brachista HOM05D005050 ORTHO05D006198 6.6e-118 428.3 407 62.9
Sed0002635 Sechium edule HOM05D005050 ORTHO05D006198 8.6e-118 427.9 419 62.3
ClCG05G009900 Citrullus lanatus HOM05D005050 ORTHO05D006198 2.5e-117 426.4 399 63.4
Eucgr.G00618 Eucalyptus grandis HOM05D005050 ORTHO05D006198 7.2e-117 424.9 409 61.4
HanXRQChr03g0066561 Helianthus annuus HOM05D005050 ORTHO05D006198 7.2e-117 424.9 407 63.6
Cc02_g22180 Coffea canephora HOM05D005050 ORTHO05D006198 9.5e-117 424.5 414 64.0
FvH4_5g29810 Fragaria vesca HOM05D005050 ORTHO05D006198 9.5e-117 424.5 420 61.7
Gohir.A01G001100 Gossypium hirsutum HOM05D005050 ORTHO05D006198 9.5e-117 424.5 405 62.0
MELO3C019500.2 Cucumis melo HOM05D005050 ORTHO05D006198 1.6e-116 423.7 421 60.8
CsaV3_3G018690 Cucumis sativus L. HOM05D005050 ORTHO05D006198 1.6e-116 423.7 421 60.8
RcHm_v2.0_Chr7g0223331 Rosa chinensis HOM05D005050 ORTHO05D006198 2.1e-116 423.3 419 61.8
FAN13G0813 Fragaria x ananassa HOM05D005050 ORTHO05D006198 2.8e-116 422.9 420 61.0
Gohir.D01G000800 Gossypium hirsutum HOM05D005050 ORTHO05D006198 2.8e-116 422.9 417 60.7
Manes.10G132900 Manihot esculenta HOM05D005050 ORTHO05D006198 6.1e-116 421.8 421 60.6
FAN18G3347 Fragaria x ananassa HOM05D005050 ORTHO05D006198 8.0e-116 421.4 420 61.4
PGR042G1149 Punica granatum HOM05D005050 ORTHO05D006198 1.4e-115 420.6 406 60.6
FAN04G2386 Fragaria x ananassa HOM05D005050 ORTHO05D006198 5.2e-115 418.7 420 61.0
Lj6g0001640 Lotus japonicus HOM05D005050 ORTHO05D006198 5.2e-115 418.7 411 61.8
Cpa.g.sc2.30 Carica papaya HOM05D005050 ORTHO05D006198 8.9e-115 417.9 425 60.5
Phvul.006G211700 Phaseolus vulgaris HOM05D005050 ORTHO05D006198 1.5e-114 417.2 409 64.3
Nn5g27962 Nelumbo nucifera HOM05D005050 ORTHO05D006198 2.0e-114 416.8 422 61.4
Cfa005552 Carpinus fangiana HOM05D005050 ORTHO05D006198 2.6e-114 416.4 414 60.6
PSO170G5110 Papaver somniferum HOM05D005050 ORTHO05D006198 3.4e-114 416.0 408 64.5
ECA240G2670 Erigeron canadensis HOM05D005050 ORTHO05D006198 7.5e-114 414.8 405 63.2
Sed0013576 Sechium edule HOM05D005050 ORTHO05D006198 7.5e-114 414.8 412 61.4
MSTRG.16540 Avicennia marina HOM05D005050 ORTHO05D006198 1.3e-113 414.1 408 60.8
TWI59G1202 Tripterygium wilfordii HOM05D005050 ORTHO05D006198 2.9e-113 412.9 419 59.9
CANSAT11G1507 Cannabis sativa HOM05D005050 ORTHO05D006198 4.9e-113 412.1 415 60.5
CiPaw.05G042200 Carya illinoinensis HOM05D005050 ORTHO05D006198 4.9e-113 412.1 406 62.3
QL11p019153 Quercus lobata HOM05D005050 ORTHO05D006198 6.4e-113 411.8 417 59.0
PSO782G5384 Papaver somniferum HOM05D005050 ORTHO05D006198 8.3e-113 411.4 405 64.2
HPP92_002226 Vanilla planifolia HOM05D005050 ORTHO05D006198 3.2e-112 409.5 393 61.1
Lalb_Chr12g0208631 Lupinus albus HOM05D005050 ORTHO05D006198 4.1e-112 409.1 418 61.0
HPP92_002179 Vanilla planifolia HOM05D005050 ORTHO05D006198 2.7e-111 406.4 395 60.5
Rhsim11G0132400 Rhododendron simsii HOM05D005050 ORTHO05D006198 4.6e-111 405.6 422 60.0
arahy.Tifrunner.gnm1.ann1.X2Y1CG Arachis hypogaea HOM05D005050 ORTHO05D006198 5.9e-111 405.2 413 60.0
Prupe.1G564400 Prunus persica HOM05D005050 ORTHO05D006198 1.0e-110 404.4 412 60.2
arahy.Tifrunner.gnm1.ann1.V19TN9 Arachis hypogaea HOM05D005050 ORTHO05D006198 2.3e-110 403.3 413 59.8
Aqoxy5G02481 Aquilegia oxysepala HOM05D005050 ORTHO05D006198 3.0e-110 402.9 429 58.3
Atru.chr6.1005 Acer truncatum HOM05D005050 ORTHO05D006198 6.6e-110 401.7 425 58.6
Glyma.08G184100 Glycine max HOM05D005050 ORTHO05D006198 1.1e-109 401.0 412 62.4
VMungo0251G1671 Vigna mungo HOM05D005050 ORTHO05D006198 1.5e-109 400.6 412 60.4
TPR.G2134 Trifolium pratense HOM05D005050 ORTHO05D006198 2.5e-109 399.8 411 61.6
Medtr2g007800 Medicago truncatula HOM05D005050 ORTHO05D006198 5.6e-109 398.7 404 61.9
SGA_v2.0_scaffold1G00335 Striga asiatica HOM05D005050 ORTHO05D006198 7.3e-109 398.3 423 57.4
Lsat_1_v5_gn_9_116221 Lactuca sativa HOM05D005050 ORTHO05D006198 1.2e-108 397.5 434 59.2
TWI23G0447 Tripterygium wilfordii HOM05D005050 ORTHO05D006198 2.1e-108 396.7 417 58.8
MD15G1419700 Malus domestica HOM05D005050 ORTHO05D006198 1.4e-107 394.0 443 56.9
Hma1.2p1_0557F.1_g178270 Hydrangea macrophylla HOM05D005050 ORTHO05D006198 1.2e-106 391.0 423 60.3
Glyma.15G048700 Glycine max HOM05D005050 ORTHO05D006198 2.0e-106 390.2 369 65.9
TWI14G0535 Tripterygium wilfordii HOM05D005050 ORTHO05D006198 7.5e-106 388.3 415 58.1
MD08G1227300 Malus domestica HOM05D005050 ORTHO05D006198 9.8e-106 387.9 465 54.4
AUR62025851 Chenopodium quinoa HOM05D005050 ORTHO05D006198 4.9e-105 385.6 402 57.7
Hund13068 Selenicereus undatus HOM05D005050 ORTHO05D006198 4.9e-105 385.6 407 57.7
FAN08G2278 Fragaria x ananassa HOM05D005050 ORTHO05D006198 1.9e-104 383.6 420 57.4
arahy.Tifrunner.gnm1.ann1.UX2R4L Arachis hypogaea HOM05D005050 ORTHO05D006198 2.4e-104 383.3 404 60.4
Migut.B00660 Erythranthe guttata HOM05D005050 ORTHO05D006198 2.0e-103 380.2 391 59.8
COL.COLO4_17901 Corchorus olitorius HOM05D005050 ORTHO05D006198 2.7e-103 379.8 364 61.8
arahy.Tifrunner.gnm1.ann1.HMQ04Z Arachis hypogaea HOM05D005050 ORTHO05D006198 7.8e-103 378.3 404 59.2
Solyc01g104560.3 Solanum lycopersicum HOM05D005050 ORTHO05D006198 1.0e-102 377.9 419 57.8
Carub.0001s1495 Capsella rubella HOM05D005050 ORTHO05D006198 9.5e-101 371.3 410 56.1
DCAR_029238 Daucus carota HOM05D005050 ORTHO05D006198 2.8e-100 369.8 376 61.2
PGSC0003DMG400029778 Solanum tuberosum HOM05D005050 ORTHO05D006198 1.1e-99 367.9 400 57.0
ATR0121G012 Amborella trichopoda HOM05D005050 ORTHO05D006198 4.0e-99 365.9 389 59.6
Nitab4.5_0003071g0060 Nicotiana tabacum HOM05D005050 ORTHO05D006198 1.2e-98 364.4 409 58.4
AT1G15200 Arabidopsis thaliana HOM05D005050 ORTHO05D006198 5.8e-98 362.1 416 55.0
Lj9A312G31 Lonicera japonica HOM05D005050 ORTHO05D006198 2.9e-97 359.8 408 56.4
Zm00001eb216800 Zea mays HOM05D005050 ORTHO05D006198 8.3e-97 358.2 408 55.9
Sopen01g047070 Solanum pennellii HOM05D005050 ORTHO05D006198 2.4e-96 356.7 404 57.2
Hma1.2p1_0557F.1_g178260 Hydrangea macrophylla HOM05D005050 ORTHO05D006198 3.2e-96 356.3 495 51.1
TAR161G0004 Trochodendron aralioides HOM05D005050 ORTHO05D006198 9.2e-96 354.8 274 71.9
Peaxi162Scf00011g00032 Petunia axillaris HOM05D005050 ORTHO05D006198 2.1e-95 353.6 411 56.2
AL1G27280 Arabidopsis lyrata HOM05D005050 ORTHO05D006198 1.0e-94 351.3 444 50.9
CAN.G1352.15 Capsicum annuum HOM05D005050 ORTHO05D006198 1.3e-94 350.9 402 55.5
Sp1g13510 Schrenkiella parvula HOM05D005050 ORTHO05D006198 1.1e-93 347.8 412 53.4
Duzib132G0934 Durio zibethinus HOM05D005050 ORTHO05D006198 1.5e-93 347.4 410 54.6
Potri.003G021900 Populus trichocarpa HOM05D005050 ORTHO05D006198 7.3e-93 345.1 408 53.9
Nitab4.5_0009907g0040 Nicotiana tabacum HOM05D005050 ORTHO05D006198 1.6e-92 344.0 411 55.7
Thhalv10007720m.g Eutrema salsugineum HOM05D005050 ORTHO05D006198 2.1e-92 343.6 366 56.6
THA.LOC104805935 Tarenaya hassleriana HOM05D005050 ORTHO05D006198 2.1e-92 343.6 431 51.5
SalBow5G1811 Salvia bowleyana HOM05D005050 ORTHO05D006198 2.8e-92 343.2 415 54.2
SalBow5G5549 Salvia bowleyana HOM05D005050 ORTHO05D006198 6.2e-92 342.0 415 54.0
Ah.10g032530 Amaranthus hybridus HOM05D005050 ORTHO05D006198 3.1e-91 339.7 400 54.8
AUR62029865 Chenopodium quinoa HOM05D005050 ORTHO05D006198 2.0e-90 337.0 343 58.3
EL10Ac2g03230 Beta vulgaris HOM05D005050 ORTHO05D006198 7.6e-90 335.1 394 53.8
BcaC05g25448 Brassica carinata HOM05D005050 ORTHO05D006198 2.9e-89 333.2 392 53.6
C05p13300 Brassica napus HOM05D005050 ORTHO05D006198 2.9e-89 333.2 392 53.6
A06p11180 Brassica napus HOM05D005050 ORTHO05D006198 8.4e-89 331.6 425 50.8
BcaB02g06585 Brassica carinata HOM05D005050 ORTHO05D006198 3.2e-88 329.7 394 52.5
CiPaw.06G149400 Carya illinoinensis HOM05D005050 ORTHO05D006198 2.7e-87 326.6 405 53.6
Aa31LG1G10 Aethionema arabicum HOM05D005050 ORTHO05D006198 1.5e-85 320.9 377 55.7
SHI16611 Sapria himalayana HOM05D005050 ORTHO05D006198 8.1e-84 315.1 413 50.4
Dinv24255 Davidia involucrata HOM05D005050 ORTHO05D006198 5.2e-83 312.4 293 63.5
vmacro01791 Vaccinium macrocarpon HOM05D005050 ORTHO05D006198 5.4e-80 302.4 318 59.1
Oeu000199.1 Olea europaea HOM05D005050 ORTHO05D006198 3.5e-79 299.7 422 50.0
unitig_699.g19082 Utricularia gibba HOM05D005050 ORTHO05D006198 1.4e-75 287.7 438 47.0
Lalb_Chr07g0189191 Lupinus albus HOM05D005050 ORTHO05D006198 3.1e-75 286.6 303 59.4
BcaNung05518 Brassica carinata HOM05D005050 ORTHO05D006198 5.4e-72 275.8 405 48.6
AagrBONN_evm.TU.Sc2ySwM_344.3376 Anthoceros agrestis HOM05D005050 ORTHO05D006198 1.3e-68 264.6 409 48.4
Oeu026061.1 Olea europaea HOM05D005050 ORTHO05D006198 1.8e-67 260.8 252 61.1
unitig_27.g24937 Utricularia gibba HOM05D005050 ORTHO05D006198 4.0e-67 259.6 259 57.9
Potri.001G208200 Populus trichocarpa HOM05D005050 ORTHO05D006198 1.5e-66 257.7 270 59.3
Mapoly0066s0029 Marchantia polymorpha HOM05D005050 ORTHO05D006198 3.4e-66 256.5 391 46.3
Sc10g0004970 Simmondsia chinensis HOM05D005050 ORTHO05D006198 1.3e-65 254.6 322 52.8
Psat1g219800 Pisum sativum HOM05D005050 ORTHO05D006198 1.9e-61 240.7 261 60.9
BcaB03g14555 Brassica carinata HOM05D005050 ORTHO05D006198 3.3e-61 240.0 251 59.0
C08p45110 Brassica napus HOM05D005050 ORTHO05D006198 4.8e-60 236.1 335 47.8
arahy.Tifrunner.gnm1.ann1.5TH0SF Arachis hypogaea HOM05D005050 ORTHO05D006198 2.7e-55 220.3 262 58.0
Pp3c17_13310 Physcomitrium patens HOM05D005050 ORTHO05D006198 4.6e-55 219.5 445 38.0
Pp3c14_12690 Physcomitrium patens HOM05D005050 ORTHO05D006198 6.0e-55 219.2 465 37.6
CANSAT25G2757 Cannabis sativa HOM05D005050 ORTHO05D006198 1.0e-54 218.4 193 60.1
Zm00001eb054200 Zea mays HOM05D005050 ORTHO05D006198 5.1e-54 216.1 261 55.9
CARHR015720 Cardamine hirsuta HOM05D005050 ORTHO05D006198 8.7e-54 215.3 262 53.1
Os03g0701900 Oryza sativa ssp. japonica HOM05D005050 ORTHO05D006198 2.5e-53 213.8 261 54.0
BolC5t30067H Brassica oleracea HOM05D005050 ORTHO05D006198 7.4e-53 212.2 269 53.2
BraA06t24298Z Brassica rapa HOM05D005050 ORTHO05D006198 2.1e-52 210.7 269 52.4
BolC8t52057H Brassica oleracea HOM05D005050 ORTHO05D006198 3.7e-52 209.9 267 52.4
AUR62018227 Chenopodium quinoa HOM05D005050 ORTHO05D006198 5.9e-50 202.6 335 45.4
BraA09t41526Z Brassica rapa HOM05D005050 ORTHO05D006198 1.0e-49 201.8 256 52.3
CANSAT35G1170 Cannabis sativa HOM05D005050 ORTHO05D006198 3.7e-44 183.3 135 67.4
CANSAT56G3350 Cannabis sativa HOM05D005050 ORTHO05D006198 6.3e-44 182.6 134 67.9
SMO116G0236 Selaginella moellendorffii HOM05D005050 ORTHO05D006198 1.7e-41 174.5 409 37.4
BcaB03g14557 Brassica carinata HOM05D005050 ORTHO05D006198 9.4e-40 168.7 185 56.2
CBR_g5711 Chara braunii HOM05D005050 ORTHO05D006198 7.7e-34 149.1 470 31.3
Oeu026060.1 Olea europaea HOM05D005050 ORTHO05D006198 7.7e-34 149.1 179 55.9
BcaB03g14552 Brassica carinata HOM05D005050 ORTHO05D006198 1.4e-30 138.3 134 59.7
Haze_01617 Corylus avellana HOM05D005050 ORTHO05D006198 5.2e-30 136.3 194 50.0
CARHR015710 Cardamine hirsuta HOM05D005050 ORTHO05D006198 6.7e-30 136.0 130 59.2
Haze_01615 Corylus avellana HOM05D005050 ORTHO05D006198 3.3e-29 133.7 122 63.9
unitig_27.g24936 Utricularia gibba HOM05D000188 ORTHO05D005820 5.0e-25 119.8 112 60.7
BcaNung06586 Brassica carinata HOM05D005050 ORTHO05D006198 5.9e-18 96.3 125 49.6
Actinidia00225 Actinidia chinensis HOM05D000304 ORTHO05D000185 7.2e-16 89.4 172 36.6
Sabra03G0013800 Salix brachista HOM05D005050 ORTHO05D006198 2.0e-10 71.2 229 33.6
Zm00001eb142240 Zea mays HOM05D000061 ORTHO05D000050 3.2e-08 63.9 37 81.1
Cre09.g387300 Chlamydomonas reinhardtii HOM05D005050 ORTHO05D006198 2.7e-07 60.8 108 38.0
Zm00001eb244490 Zea mays HOM05D001326 ORTHO05D002471 1.4e-06 58.5 33 81.8


User provided reference genes

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