Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE12G0200 Ceratophyllum demersum HOM05D002426 ORTHO05D002873 7.6e-74 280.4 141 100.0
CDE09G0268 Ceratophyllum demersum HOM05D002426 ORTHO05D002873 6.7e-14 81.3 224 33.5
CDE02G2894 Ceratophyllum demersum HOM05D002426 ORTHO05D002873 2.0e-10 69.7 229 32.3
CiPaw.07G084500 Carya illinoinensis HOM05D002426 ORTHO05D002873 2.2e-09 66.2 229 29.7
CDE04G1876 Ceratophyllum demersum HOM05D002426 ORTHO05D002873 2.9e-09 65.9 51 66.7
Lsat_1_v5_gn_1_76500 Lactuca sativa HOM05D002426 ORTHO05D002873 2.9e-09 65.9 225 30.2
GSVIVG01038211001 Vitis vinifera HOM05D002426 ORTHO05D002873 6.5e-09 64.7 218 29.8
Lj1g0025516 Lotus japonicus HOM05D002426 ORTHO05D002873 1.1e-08 63.9 216 31.9
MBI07_g36522_MAGBIO Magnolia biondii HOM05D002426 ORTHO05D002873 1.5e-08 63.5 225 30.2
TAR362G1231 Trochodendron aralioides HOM05D002426 ORTHO05D002873 2.5e-08 62.8 226 31.0
CiPaw.01G199600 Carya illinoinensis HOM05D002426 ORTHO05D002873 4.2e-08 62.0 216 29.6
Gohir.A09G213622 Gossypium hirsutum HOM05D002426 ORTHO05D002873 4.2e-08 62.0 199 32.7
TWI18G0535 Tripterygium wilfordii HOM05D002426 ORTHO05D002873 5.5e-08 61.6 219 30.1
HanXRQChr07g0188341 Helianthus annuus HOM05D002426 ORTHO05D002873 7.2e-08 61.2 51 64.7
Rhsim05G0163000 Rhododendron simsii HOM05D002426 ORTHO05D002873 9.4e-08 60.8 49 67.3
TWI15G0101 Tripterygium wilfordii HOM05D002426 ORTHO05D002873 9.4e-08 60.8 230 30.0
Dinv24777 Davidia involucrata HOM05D002426 ORTHO05D002873 1.2e-07 60.5 216 29.6
Lalb_Chr03g0038021 Lupinus albus HOM05D002426 ORTHO05D002873 1.2e-07 60.5 216 31.0
Rhsim09G0005100 Rhododendron simsii HOM05D002426 ORTHO05D002873 1.2e-07 60.5 238 28.6
Nn7g37487 Nelumbo nucifera HOM05D002426 ORTHO05D002873 1.6e-07 60.1 226 30.5
Eucgr.H01863 Eucalyptus grandis HOM05D002426 ORTHO05D002873 2.1e-07 59.7 49 67.3
Medtr7g080610 Medicago truncatula HOM05D002426 ORTHO05D002873 2.1e-07 59.7 219 30.6
Thecc.04G159200 Theobroma cacao HOM05D002426 ORTHO05D002873 2.1e-07 59.7 216 29.2
TAR158G0001 Trochodendron aralioides HOM05D002426 ORTHO05D002873 2.1e-07 59.7 216 30.1
vmacro00712 Vaccinium macrocarpon HOM05D002426 ORTHO05D002873 2.1e-07 59.7 233 28.8
CSS0043769 Camellia sinensis var. sinensis HOM05D002426 ORTHO05D002873 2.7e-07 59.3 226 31.4
Sed0010037 Sechium edule HOM05D002426 ORTHO05D002873 2.7e-07 59.3 49 67.3
Actinidia28970 Actinidia chinensis HOM05D002426 ORTHO05D002873 3.6e-07 58.9 244 28.7
Ca_08019_v3 Cicer arietinum L. HOM05D002426 ORTHO05D002873 3.6e-07 58.9 49 65.3
ClCG11G011020 Citrullus lanatus HOM05D002426 ORTHO05D002873 3.6e-07 58.9 49 67.3
MELO3C008762.2 Cucumis melo HOM05D002426 ORTHO05D002873 3.6e-07 58.9 49 67.3
CsaV3_2G009480 Cucumis sativus L. HOM05D002426 ORTHO05D002873 3.6e-07 58.9 49 67.3
HanXRQChr01g0023371 Helianthus annuus HOM05D002426 ORTHO05D002873 3.6e-07 58.9 237 27.0
Phvul.008G051400 Phaseolus vulgaris HOM05D002426 ORTHO05D002873 3.6e-07 58.9 215 31.2
Sc16g0010710 Simmondsia chinensis HOM05D002426 ORTHO05D002873 3.6e-07 58.9 49 67.3
Actinidia05853 Actinidia chinensis HOM05D002426 ORTHO05D002873 4.7e-07 58.5 49 65.3
Glyma.18G245200 Glycine max HOM05D002426 ORTHO05D002873 4.7e-07 58.5 216 30.6
Gohir.A10G146800 Gossypium hirsutum HOM05D002426 ORTHO05D002873 4.7e-07 58.5 49 67.3
Gohir.D10G119300 Gossypium hirsutum HOM05D002426 ORTHO05D002873 4.7e-07 58.5 49 67.3
Gorai.011G131100 Gossypium raimondii HOM05D002426 ORTHO05D002873 4.7e-07 58.5 49 67.3
Os04g0496800 Oryza sativa ssp. japonica HOM05D002426 ORTHO05D002873 4.7e-07 58.5 227 29.1
arahy.Tifrunner.gnm1.ann1.P4B8S7 Arachis hypogaea HOM05D002426 ORTHO05D002873 6.1e-07 58.2 49 67.3
Cfa008492 Carpinus fangiana HOM05D002426 ORTHO05D002873 6.1e-07 58.2 237 29.1
CiPaw.08G111300 Carya illinoinensis HOM05D002426 ORTHO05D002873 6.1e-07 58.2 218 28.4
ClCG09G013710 Citrullus lanatus HOM05D002426 ORTHO05D002873 6.1e-07 58.2 226 29.2
Duzib128G0622 Durio zibethinus HOM05D002426 ORTHO05D002873 6.1e-07 58.2 241 27.8
Hma1.2p1_0108F.1_g051950 Hydrangea macrophylla HOM05D002426 ORTHO05D002873 6.1e-07 58.2 216 29.6
Potri.008G078600 Populus trichocarpa HOM05D002426 ORTHO05D002873 6.1e-07 58.2 49 65.3
Sed0005353 Sechium edule HOM05D002426 ORTHO05D002873 6.1e-07 58.2 216 28.7
Actinidia19649 Actinidia chinensis HOM05D002426 ORTHO05D002873 8.0e-07 57.8 49 63.3
CSS0009891 Camellia sinensis var. sinensis HOM05D002426 ORTHO05D002873 8.0e-07 57.8 227 30.8
CANSAT64G2142 Cannabis sativa HOM05D002426 ORTHO05D002873 8.0e-07 57.8 212 28.8
COL.COLO4_22909 Corchorus olitorius HOM05D002426 ORTHO05D002873 8.0e-07 57.8 228 28.9
Haze_04622 Corylus avellana HOM05D002426 ORTHO05D002873 8.0e-07 57.8 215 29.8
Haze_11160 Corylus avellana HOM05D002426 ORTHO05D002873 8.0e-07 57.8 216 28.7
Dinv17148 Davidia involucrata HOM05D002426 ORTHO05D002873 8.0e-07 57.8 49 65.3
Potri.007G142000 Populus trichocarpa HOM05D002426 ORTHO05D002873 8.0e-07 57.8 49 65.3
ATR0743G004 Amborella trichopoda HOM05D002426 ORTHO05D002873 1.0e-06 57.4 226 28.3
EL10Ac4g10035 Beta vulgaris HOM05D002426 ORTHO05D002873 1.0e-06 57.4 211 30.3
CSS0001320 Camellia sinensis var. sinensis HOM05D002426 ORTHO05D002873 1.0e-06 57.4 219 30.6
Cpa.g.sc88.18 Carica papaya HOM05D002426 ORTHO05D002873 1.0e-06 57.4 49 65.3
Glyma.05G167300 Glycine max HOM05D002426 ORTHO05D002873 1.0e-06 57.4 49 65.3
Glyma.08G125700 Glycine max HOM05D002426 ORTHO05D002873 1.0e-06 57.4 49 65.3
Glyma.09G247500 Glycine max HOM05D002426 ORTHO05D002873 1.0e-06 57.4 49 63.3
Hma1.2p1_1218F.1_g267730 Hydrangea macrophylla HOM05D002426 ORTHO05D002873 1.0e-06 57.4 215 29.8
Phvul.002G247800 Phaseolus vulgaris HOM05D002426 ORTHO05D002873 1.0e-06 57.4 49 65.3
Ah.07g203060 Amaranthus hybridus HOM05D002426 ORTHO05D002873 1.4e-06 57.0 49 65.3
Thhalv10018184m.g Eutrema salsugineum HOM05D002426 ORTHO05D002873 1.4e-06 57.0 49 63.3
Lsat_1_v5_gn_5_173920 Lactuca sativa HOM05D002426 ORTHO05D002873 1.4e-06 57.0 49 61.2
Lju470A12T58 Lonicera japonica HOM05D002426 ORTHO05D002873 1.4e-06 57.0 216 29.2
Lalb_Chr12g0204551 Lupinus albus HOM05D002426 ORTHO05D002873 1.4e-06 57.0 49 63.3
SEGI_03491 Sequoiadendron giganteum HOM05D002426 ORTHO05D002873 1.4e-06 57.0 49 59.2
Atru.chr3.1922 Acer truncatum HOM05D002426 ORTHO05D002873 1.8e-06 56.6 216 28.7
CSS0025776 Camellia sinensis var. sinensis HOM05D002426 ORTHO05D002873 1.8e-06 56.6 219 31.1
CSS0036901 Camellia sinensis var. sinensis HOM05D002426 ORTHO05D002873 1.8e-06 56.6 227 30.8
Manes.01G018300 Manihot esculenta HOM05D002426 ORTHO05D002873 1.8e-06 56.6 212 29.7
Manes.12G000200 Manihot esculenta HOM05D002426 ORTHO05D002873 1.8e-06 56.6 49 63.3
Os02g0608400 Oryza sativa ssp. japonica HOM05D002426 ORTHO05D002873 1.8e-06 56.6 238 28.2
Thecc.05G113800 Theobroma cacao HOM05D002426 ORTHO05D002873 1.8e-06 56.6 226 28.8
HPP92_009176 Vanilla planifolia HOM05D002426 ORTHO05D002873 1.8e-06 56.6 49 63.3
HPP92_009184 Vanilla planifolia HOM05D002426 ORTHO05D002873 1.8e-06 56.6 49 63.3
AL2G22480 Arabidopsis lyrata HOM05D002426 ORTHO05D002873 2.3e-06 56.2 49 63.3
AT1G65540 Arabidopsis thaliana HOM05D002426 ORTHO05D002873 2.3e-06 56.2 49 63.3
BcaB03g15332 Brassica carinata HOM05D002426 ORTHO05D002873 2.3e-06 56.2 49 63.3
A07p32860 Brassica napus HOM05D002426 ORTHO05D002873 2.3e-06 56.2 49 63.3
C06p39090 Brassica napus HOM05D002426 ORTHO05D002873 2.3e-06 56.2 49 63.3
BolC6t39002H Brassica oleracea HOM05D002426 ORTHO05D002873 2.3e-06 56.2 49 63.3
BraA07t30913Z Brassica rapa HOM05D002426 ORTHO05D002873 2.3e-06 56.2 49 63.3
CANSAT64G2086 Cannabis sativa HOM05D002426 ORTHO05D002873 2.3e-06 56.2 49 63.3
Carub.0002s1137 Capsella rubella HOM05D002426 ORTHO05D002873 2.3e-06 56.2 49 63.3
CARHR057250 Cardamine hirsuta HOM05D002426 ORTHO05D002873 2.3e-06 56.2 49 63.3
Ca_17844_v3 Cicer arietinum L. HOM05D002426 ORTHO05D002873 2.3e-06 56.2 232 28.9
Duzib177G0202 Durio zibethinus HOM05D002426 ORTHO05D002873 2.3e-06 56.2 226 28.8
ECA248G3929 Erigeron canadensis HOM05D002426 ORTHO05D002873 2.3e-06 56.2 225 26.7
Lj4g0005716 Lotus japonicus HOM05D002426 ORTHO05D002873 2.3e-06 56.2 49 63.3
Psat3g102240 Pisum sativum HOM05D002426 ORTHO05D002873 2.3e-06 56.2 49 65.3
Psat7g063120 Pisum sativum HOM05D002426 ORTHO05D002873 2.3e-06 56.2 215 27.9
PGR042G3285 Punica granatum HOM05D002426 ORTHO05D002873 2.3e-06 56.2 49 61.2
Sp5g20450 Schrenkiella parvula HOM05D002426 ORTHO05D002873 2.3e-06 56.2 49 63.3
Hund07387 Selenicereus undatus HOM05D002426 ORTHO05D002873 2.3e-06 56.2 49 65.3
unitig_46.g18573 Utricularia gibba HOM05D002426 ORTHO05D002873 2.3e-06 56.2 208 29.3
Zm00001eb078520 Zea mays HOM05D002426 ORTHO05D002873 2.3e-06 56.2 224 28.6
Zm00001eb348080 Zea mays HOM05D002426 ORTHO05D002873 2.3e-06 56.2 238 28.6
EL10Ac3g06135 Beta vulgaris HOM05D002426 ORTHO05D002873 3.0e-06 55.8 49 63.3
AUR62000262 Chenopodium quinoa HOM05D002426 ORTHO05D002873 3.0e-06 55.8 49 61.2
AUR62006610 Chenopodium quinoa HOM05D002426 ORTHO05D002873 3.0e-06 55.8 49 61.2
DCAR_031599 Daucus carota HOM05D002426 ORTHO05D002873 3.0e-06 55.8 49 59.2
QL01p052207 Quercus lobata HOM05D002426 ORTHO05D002873 3.0e-06 55.8 216 28.2
Sabra08G0058400 Salix brachista HOM05D002426 ORTHO05D002873 3.0e-06 55.8 49 63.3
VMungo0251G3491 Vigna mungo HOM05D002426 ORTHO05D002873 3.0e-06 55.8 232 29.3
Aa31LG2G2520 Aethionema arabicum HOM05D002426 ORTHO05D002873 4.0e-06 55.5 49 63.3
MSTRG.9236 Avicennia marina HOM05D002426 ORTHO05D002873 4.0e-06 55.5 49 61.2
Ciclev10018983m.g Citrus clementina HOM05D002426 ORTHO05D002873 4.0e-06 55.5 215 27.9
Duzib151G0163 Durio zibethinus HOM05D002426 ORTHO05D002873 4.0e-06 55.5 49 65.3
HanXRQChr11g0342971 Helianthus annuus HOM05D002426 ORTHO05D002873 4.0e-06 55.5 225 25.3
MD15G1146400 Malus domestica HOM05D002426 ORTHO05D002873 4.0e-06 55.5 49 63.3
Hund21935 Selenicereus undatus HOM05D002426 ORTHO05D002873 4.0e-06 55.5 48 64.6
Hund22564 Selenicereus undatus HOM05D002426 ORTHO05D002873 4.0e-06 55.5 214 27.6
Zm00001eb246700 Zea mays HOM05D002426 ORTHO05D002873 4.0e-06 55.5 219 28.8
arahy.Tifrunner.gnm1.ann1.5D8RXX Arachis hypogaea HOM05D002426 ORTHO05D002873 5.2e-06 55.1 216 29.6
AUR62023744 Chenopodium quinoa HOM05D002426 ORTHO05D002873 5.2e-06 55.1 49 59.2
Migut.F02082 Erythranthe guttata HOM05D002426 ORTHO05D002873 5.2e-06 55.1 49 61.2
Gohir.A13G075800 Gossypium hirsutum HOM05D002426 ORTHO05D002873 5.2e-06 55.1 219 28.8
Gohir.D13G095600 Gossypium hirsutum HOM05D002426 ORTHO05D002873 5.2e-06 55.1 232 27.2
Gorai.001G247800 Gossypium raimondii HOM05D002426 ORTHO05D002873 5.2e-06 55.1 232 27.2
PGR031G2926 Punica granatum HOM05D002426 ORTHO05D002873 5.2e-06 55.1 49 63.3
SGA_v2.0_scaffold62G21483 Striga asiatica HOM05D002426 ORTHO05D002873 5.2e-06 55.1 49 61.2
FAN26G0319 Fragaria x ananassa HOM05D002426 ORTHO05D002873 6.7e-06 54.7 49 61.2
Nitab4.5_0001704g0120 Nicotiana tabacum HOM05D002426 ORTHO05D002873 6.7e-06 54.7 49 63.3
Peaxi162Scf00169g00064 Petunia axillaris HOM05D002426 ORTHO05D002873 6.7e-06 54.7 216 28.7
Potri.010G178400 Populus trichocarpa HOM05D002426 ORTHO05D002873 6.7e-06 54.7 49 63.3
Sabra07G0113800 Salix brachista HOM05D002426 ORTHO05D002873 6.7e-06 54.7 215 28.4
Sabra07G0117100 Salix brachista HOM05D002426 ORTHO05D002873 6.7e-06 54.7 215 28.4
Solyc12g096810.2 Solanum lycopersicum HOM05D002426 ORTHO05D002873 6.7e-06 54.7 49 63.3
Sopen12g032630 Solanum pennellii HOM05D002426 ORTHO05D002873 6.7e-06 54.7 216 30.1
Atru.chr10.157 Acer truncatum HOM05D002426 ORTHO05D002873 8.8e-06 54.3 49 61.2
MSTRG.27419 Avicennia marina HOM05D002426 ORTHO05D002873 8.8e-06 54.3 49 61.2
Ciclev10014374m.g Citrus clementina HOM05D002426 ORTHO05D002873 8.8e-06 54.3 217 27.2
Duzib268G1434 Durio zibethinus HOM05D002426 ORTHO05D002873 8.8e-06 54.3 212 27.8
Nitab4.5_0002356g0030 Nicotiana tabacum HOM05D002426 ORTHO05D002873 8.8e-06 54.3 216 30.1
THA.LOC104805678 Tarenaya hassleriana HOM05D002426 ORTHO05D002873 8.8e-06 54.3 236 28.4
vmacro19550 Vaccinium macrocarpon HOM05D002426 ORTHO05D002873 8.8e-06 54.3 47 63.8


User provided reference genes

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