Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE12G0168 Ceratophyllum demersum HOM05D005488 ORTHO05D006568 4.2e-72 274.6 143 100.0
CDE04G3246 Ceratophyllum demersum HOM05D005488 ORTHO05D006568 1.5e-61 239.6 143 86.7
EL10Ac1g00715 Beta vulgaris HOM05D005488 ORTHO05D006568 2.4e-43 179.1 135 68.1
Solyc01g088610.4 Solanum lycopersicum HOM05D005488 ORTHO05D006568 1.6e-42 176.4 143 65.0
MD07G1091300 Malus domestica HOM05D005488 ORTHO05D006568 2.0e-42 176.0 143 66.4
FvH4_7g08830 Fragaria vesca HOM05D005488 ORTHO05D006568 2.7e-42 175.6 143 62.9
FAN06G3564 Fragaria x ananassa HOM05D005488 ORTHO05D006568 2.7e-42 175.6 143 62.9
Sopen01g035460 Solanum pennellii HOM05D005488 ORTHO05D006568 2.7e-42 175.6 143 64.3
Prupe.2G116500 Prunus persica HOM05D005488 ORTHO05D006568 4.5e-42 174.9 144 64.6
CiPaw.14G016900 Carya illinoinensis HOM05D005488 ORTHO05D006568 5.9e-42 174.5 143 63.6
FAN03G1834 Fragaria x ananassa HOM05D005488 ORTHO05D006568 7.7e-42 174.1 144 62.5
AUR62013788 Chenopodium quinoa HOM05D005488 ORTHO05D006568 1.0e-41 173.7 137 65.0
FAN01G0908 Fragaria x ananassa HOM05D005488 ORTHO05D006568 1.0e-41 173.7 143 62.2
RcHm_v2.0_Chr1g0344251 Rosa chinensis HOM05D005488 ORTHO05D006568 1.0e-41 173.7 143 62.2
PGSC0003DMG400001718 Solanum tuberosum HOM05D005488 ORTHO05D006568 1.3e-41 173.3 143 63.6
FAN10G0732 Fragaria x ananassa HOM05D005488 ORTHO05D006568 1.7e-41 172.9 143 62.2
FAN10G4236 Fragaria x ananassa HOM05D005488 ORTHO05D006568 3.8e-41 171.8 143 62.2
MD02G1223400 Malus domestica HOM05D005488 ORTHO05D006568 6.5e-41 171.0 143 65.0
Manes.05G058400 Manihot esculenta HOM05D005488 ORTHO05D006568 6.5e-41 171.0 137 65.7
Oeu012019.1 Olea europaea HOM05D002442 ORTHO05D006568 6.5e-41 171.0 143 63.6
Potri.014G044300 Populus trichocarpa HOM05D005488 ORTHO05D006568 6.5e-41 171.0 145 61.4
TWI14G1396 Tripterygium wilfordii HOM05D005488 ORTHO05D006568 8.6e-41 170.6 137 65.0
Cfa011024 Carpinus fangiana HOM05D005488 ORTHO05D006568 1.1e-40 170.2 143 60.8
THA.LOC104827584 Tarenaya hassleriana HOM05D005488 ORTHO05D006568 1.1e-40 170.2 139 62.6
Sc26g0001760 Simmondsia chinensis HOM05D005488 ORTHO05D006568 1.5e-40 169.9 111 73.9
AUR62023368 Chenopodium quinoa HOM05D005488 ORTHO05D006568 1.9e-40 169.5 137 63.5
GSVIVG01018352001 Vitis vinifera HOM05D005488 ORTHO05D006568 2.5e-40 169.1 143 63.6
CiPaw.13G022100 Carya illinoinensis HOM05D005488 ORTHO05D006568 3.3e-40 168.7 143 62.9
ATR0665G403 Amborella trichopoda HOM05D005488 ORTHO05D006568 4.2e-40 168.3 131 66.4
PGR042G2970 Punica granatum HOM05D005488 ORTHO05D006568 5.5e-40 167.9 143 62.2
Atru.chr5.75 Acer truncatum HOM05D005488 ORTHO05D006568 7.2e-40 167.5 143 61.5
DCAR_025027 Daucus carota HOM05D005488 ORTHO05D006568 7.2e-40 167.5 143 62.9
Gohir.D08G161700 Gossypium hirsutum HOM05D005488 ORTHO05D006568 9.5e-40 167.2 136 62.5
Hund17125 Selenicereus undatus HOM05D005488 ORTHO05D006568 1.2e-39 166.8 111 71.2
COL.COLO4_12353 Corchorus olitorius HOM05D005488 ORTHO05D006568 1.6e-39 166.4 136 61.8
Lj3g0015162 Lotus japonicus HOM05D005488 ORTHO05D006568 1.6e-39 166.4 143 58.7
TWI23G0236 Tripterygium wilfordii HOM05D005488 ORTHO05D006568 1.6e-39 166.4 139 63.3
CANSAT25G0013 Cannabis sativa HOM05D005488 ORTHO05D006568 2.1e-39 166.0 143 61.5
Haze_02901 Corylus avellana HOM05D005488 ORTHO05D006568 2.1e-39 166.0 140 60.0
Eucgr.D01184 Eucalyptus grandis HOM05D005488 ORTHO05D006568 2.1e-39 166.0 118 67.8
Gohir.A08G140700 Gossypium hirsutum HOM05D005488 ORTHO05D006568 2.1e-39 166.0 143 61.5
Nn6g33696 Nelumbo nucifera HOM05D005488 ORTHO05D006568 2.8e-39 165.6 143 62.2
Atru.chr5.44 Acer truncatum HOM05D005488 ORTHO05D006568 6.1e-39 164.5 143 61.5
Ciclev10022799m.g Citrus clementina HOM05D005488 ORTHO05D006568 6.1e-39 164.5 111 71.2
AL5G42420 Arabidopsis lyrata HOM05D005488 ORTHO05D006568 8.0e-39 164.1 144 59.0
CSS0036750 Camellia sinensis var. sinensis HOM05D005488 ORTHO05D006568 8.0e-39 164.1 138 62.3
CAN.G756.18 Capsicum annuum HOM05D005488 ORTHO05D006568 8.0e-39 164.1 143 60.1
Gorai.004G168100 Gossypium raimondii HOM05D005488 ORTHO05D006568 8.0e-39 164.1 143 60.8
AT3G60210 Arabidopsis thaliana HOM05D005488 ORTHO05D006568 1.4e-38 163.3 145 60.7
Nitab4.5_0005064g0040 Nicotiana tabacum HOM05D005488 ORTHO05D006568 1.4e-38 163.3 145 60.7
Nitab4.5_0004088g0020 Nicotiana tabacum HOM05D005488 ORTHO05D006568 1.8e-38 162.9 130 63.8
Peaxi162Scf00745g00015 Petunia axillaris HOM05D005488 ORTHO05D006568 1.8e-38 162.9 143 61.5
Cc02_g25610 Coffea canephora HOM05D005488 ORTHO05D006568 2.3e-38 162.5 143 61.5
PSO782G2409 Papaver somniferum HOM05D005488 ORTHO05D006568 2.3e-38 162.5 143 62.9
Cpa.g.sc52.71 Carica papaya HOM05D005488 ORTHO05D006568 3.0e-38 162.2 136 64.7
Oeu034855.1 Olea europaea HOM05D005488 ORTHO05D006568 3.0e-38 162.2 106 72.6
MSTRG.17108 Avicennia marina HOM05D005488 ORTHO05D006568 5.2e-38 161.4 139 60.4
PSO063G2958 Papaver somniferum HOM05D005488 ORTHO05D006568 6.8e-38 161.0 143 62.2
Thecc.01G402400 Theobroma cacao HOM05D005488 ORTHO05D006568 8.9e-38 160.6 136 59.6
unitig_26.g8858 Utricularia gibba HOM05D005488 ORTHO05D006568 1.2e-37 160.2 150 58.0
Zm00001eb390720 Zea mays HOM05D005488 ORTHO05D006568 1.2e-37 160.2 127 65.4
ECA234G4156 Erigeron canadensis HOM05D005488 ORTHO05D006568 2.0e-37 159.5 124 64.5
SGA_v2.0_scaffold52G19266 Striga asiatica HOM05D005488 ORTHO05D006568 2.0e-37 159.5 136 61.0
Phvul.010G041700 Phaseolus vulgaris HOM05D005488 ORTHO05D006568 3.4e-37 158.7 143 58.7
arahy.Tifrunner.gnm1.ann1.LT98XL Arachis hypogaea HOM05D005488 ORTHO05D006568 4.4e-37 158.3 145 61.4
Os10g0566700 Oryza sativa ssp. japonica HOM05D005488 ORTHO05D006568 4.4e-37 158.3 100 75.0
SalBow5G2779 Salvia bowleyana HOM05D005488 ORTHO05D006568 4.4e-37 158.3 143 58.7
Zm00001eb024030 Zea mays HOM05D005488 ORTHO05D006568 4.4e-37 158.3 137 62.0
Carub.0005s2695 Capsella rubella HOM05D005488 ORTHO05D006568 5.7e-37 157.9 144 57.6
Psat0s4427g0080 Pisum sativum HOM05D005488 ORTHO05D006568 7.5e-37 157.5 143 58.0
Migut.N01716 Erythranthe guttata HOM05D005488 ORTHO05D006568 9.8e-37 157.1 106 70.8
HanXRQChr16g0522961 Helianthus annuus HOM05D005488 ORTHO05D006568 9.8e-37 157.1 148 58.8
arahy.Tifrunner.gnm1.ann1.L23YUH Arachis hypogaea HOM05D005488 ORTHO05D006568 1.3e-36 156.8 145 60.7
Lsat_1_v5_gn_4_38520 Lactuca sativa HOM05D005488 ORTHO05D006568 1.3e-36 156.8 145 58.6
VMungo0331G0633 Vigna mungo HOM05D005488 ORTHO05D006568 1.7e-36 156.4 107 69.2
MELO3C006268.2 Cucumis melo HOM05D005488 ORTHO05D006568 2.2e-36 156.0 145 58.6
Medtr8g009280 Medicago truncatula HOM05D005488 ORTHO05D006568 2.2e-36 156.0 144 56.2
Actinidia21613 Actinidia chinensis HOM05D005488 ORTHO05D006568 2.8e-36 155.6 106 69.8
Lalb_Chr03g0040501 Lupinus albus HOM05D005488 ORTHO05D006568 2.8e-36 155.6 135 60.0
Duzib138G1174 Durio zibethinus HOM05D005488 ORTHO05D006568 3.7e-36 155.2 136 58.8
Aqoxy3G02564 Aquilegia oxysepala HOM05D005488 ORTHO05D006568 8.3e-36 154.1 106 70.8
Lalb_Chr19g0126481 Lupinus albus HOM05D005488 ORTHO05D006568 8.3e-36 154.1 106 70.8
Glyma.03G103600 Glycine max HOM05D005488 ORTHO05D006568 1.4e-35 153.3 143 56.6
Aa31LG1G26190 Aethionema arabicum HOM05D005488 ORTHO05D006568 3.1e-35 152.1 144 55.6
Carub.0004s2720 Capsella rubella HOM05D005488 ORTHO05D006568 3.1e-35 152.1 112 66.1
ClCG06G000860 Citrullus lanatus HOM05D005488 ORTHO05D006568 3.1e-35 152.1 108 70.4
ClCG05G002900 Citrullus lanatus HOM05D005488 ORTHO05D006568 4.1e-35 151.8 145 57.2
CsaV3_3G010440 Cucumis sativus L. HOM05D005488 ORTHO05D006568 5.4e-35 151.4 145 56.6
Sed0000336 Sechium edule HOM05D005488 ORTHO05D006568 7.0e-35 151.0 108 71.3
Sed0025787 Sechium edule HOM05D005488 ORTHO05D006568 9.2e-35 150.6 108 68.5
AT2G44650 Arabidopsis thaliana HOM05D005488 ORTHO05D006568 1.2e-34 150.2 140 55.7
Ca_23141_v3 Cicer arietinum L. HOM05D005488 ORTHO05D006568 1.2e-34 150.2 144 55.6
TPR.G17350 Trifolium pratense HOM05D005488 ORTHO05D006568 1.6e-34 149.8 106 65.1
AL4G43700 Arabidopsis lyrata HOM05D005488 ORTHO05D006568 5.9e-34 147.9 145 55.2
Migut.B01488 Erythranthe guttata HOM05D005488 ORTHO05D006568 7.8e-34 147.5 125 60.0
Thhalv10001677m.g Eutrema salsugineum HOM05D005488 ORTHO05D006568 7.8e-34 147.5 111 65.8
CSS0010758 Camellia sinensis var. sinensis HOM05D005488 ORTHO05D006568 1.3e-33 146.7 144 54.9
SEGI_24977 Sequoiadendron giganteum HOM05D005488 ORTHO05D006568 1.7e-33 146.4 105 69.5
BraA05t19455Z Brassica rapa HOM05D005488 ORTHO05D006568 2.9e-33 145.6 112 63.4
CSS0012976 Camellia sinensis var. sinensis HOM05D005488 ORTHO05D006568 2.9e-33 145.6 143 56.6
Dinv44023 Davidia involucrata HOM05D005488 ORTHO05D006568 2.9e-33 145.6 90 80.0
A05p04790 Brassica napus HOM05D005488 ORTHO05D006568 3.8e-33 145.2 112 63.4
BcaB02g08840 Brassica carinata HOM05D005488 ORTHO05D006568 6.6e-33 144.4 139 55.4
BcaC02g12287 Brassica carinata HOM05D005488 ORTHO05D006568 8.6e-33 144.1 112 62.5
C04p05600 Brassica napus HOM05D005488 ORTHO05D006568 8.6e-33 144.1 112 62.5
BolC4t22190H Brassica oleracea HOM05D005488 ORTHO05D006568 8.6e-33 144.1 112 62.5
BolC4t28620H Brassica oleracea HOM05D005488 ORTHO05D006568 8.6e-33 144.1 139 55.4
Sp4g26730 Schrenkiella parvula HOM05D005488 ORTHO05D006568 8.6e-33 144.1 112 62.5
MELO3C022455.2 Cucumis melo HOM05D005488 ORTHO05D006568 1.1e-32 143.7 130 60.0
BcaC02g07105 Brassica carinata HOM05D005488 ORTHO05D006568 1.5e-32 143.3 139 55.4
BraA04t18803Z Brassica rapa HOM05D005488 ORTHO05D006568 3.3e-32 142.1 139 54.7
CARHR139860 Cardamine hirsuta HOM05D005488 ORTHO05D006568 4.3e-32 141.7 112 62.5
Potri.002G135700 Populus trichocarpa HOM05D005488 ORTHO05D006568 5.6e-32 141.4 93 73.1
CsaV3_6G006710 Cucumis sativus L. HOM05D005488 ORTHO05D001261 9.5e-32 140.6 102 67.6
AagrBONN_evm.TU.Sc2ySwM_117.3656 Anthoceros agrestis HOM05D005488 ORTHO05D006568 3.6e-31 138.7 108 60.2
unitig_750.g28406 Utricularia gibba HOM05D005488 ORTHO05D006568 4.7e-31 138.3 145 54.5
vmacro21078 Vaccinium macrocarpon HOM05D005488 ORTHO05D006568 5.2e-30 134.8 175 45.7
Sabra02G0105500 Salix brachista HOM05D005488 ORTHO05D006568 1.5e-29 133.3 215 40.5
SMO244G0054 Selaginella moellendorffii HOM05D005488 ORTHO05D006568 5.8e-29 131.3 89 68.5
BcaB06g29391 Brassica carinata HOM05D005488 ORTHO05D006568 9.8e-29 130.6 135 52.6
HPP92_025708 Vanilla planifolia HOM05D005488 ORTHO05D006568 9.8e-29 130.6 89 69.7
Mapoly0181s0002 Marchantia polymorpha HOM05D005488 ORTHO05D006568 5.4e-27 124.8 129 54.3
A04p33420 Brassica napus HOM05D005488 ORTHO05D006568 9.2e-27 124.0 143 47.6
Rhsim01G0143400 Rhododendron simsii HOM05D005488 ORTHO05D006568 1.6e-26 123.2 122 54.9
Zm00001eb071630 Zea mays HOM05D005488 ORTHO05D006568 3.5e-26 122.1 133 55.6
C04p71170 Brassica napus HOM05D005488 ORTHO05D006568 2.3e-25 119.4 146 46.6
QL04p026246 Quercus lobata HOM05D005488 ORTHO05D006568 2.3e-25 119.4 70 82.9
Pp3c2_19170 Physcomitrium patens HOM05D005488 ORTHO05D006568 6.6e-25 117.9 143 44.8
Sabra14G0032200 Salix brachista HOM05D005488 ORTHO05D006568 1.5e-24 116.7 144 47.2
Pp3c1_20880 Physcomitrium patens HOM05D005488 ORTHO05D006568 3.6e-23 112.1 128 44.5
Duzib133G1397 Durio zibethinus HOM05D005488 ORTHO05D006568 4.0e-22 108.6 109 55.0
Gohir.D07G176200 Gossypium hirsutum HOM05D005488 ORTHO05D006568 1.4e-19 100.1 74 66.2
MD13G1240800 Malus domestica HOM05D005488 ORTHO05D006568 1.3e-17 93.6 113 51.3
Dinv43589 Davidia involucrata HOM05D005488 ORTHO05D006568 4.3e-16 88.6 95 53.7
Glyma.07G120400 Glycine max HOM05D005488 ORTHO05D006568 1.2e-15 87.0 94 51.1
Gorai.007G266500 Gossypium raimondii HOM05D005488 ORTHO05D006568 4.7e-15 85.1 65 64.6
Phvul.006G055900 Phaseolus vulgaris HOM05D005488 ORTHO05D006568 5.8e-13 78.2 94 50.0
Rhsim03G0098500 Rhododendron simsii HOM05D005488 ORTHO05D006568 1.3e-09 67.0 90 45.6
QL04p026254 Quercus lobata HOM05D005488 ORTHO05D006568 1.6e-07 60.1 74 50.0
MD00G1150500 Malus domestica HOM05D005488 ORTHO05D006568 2.8e-07 59.3 37 75.7
Lj4g0026142 Lotus japonicus HOM05D002686 ORTHO05D003222 8.1e-07 57.8 156 30.8
THA.LOC104810987 Tarenaya hassleriana HOM05D002686 ORTHO05D003222 8.1e-07 57.8 153 29.4
EL10Ac8g19011 Beta vulgaris HOM05D002686 ORTHO05D003222 1.8e-06 56.6 95 31.6
Cre16.g673729 Chlamydomonas reinhardtii HOM05D002686 ORTHO05D006568 4.0e-06 55.5 108 36.1
MCO08G048 Micromonas commoda HOM05D002597 ORTHO05D002830 4.0e-06 55.5 99 36.4
AUR62025283 Chenopodium quinoa HOM05D002686 ORTHO05D003222 8.9e-06 54.3 131 29.8


User provided reference genes

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