Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE12G0150 Ceratophyllum demersum HOM05D002174 ORTHO05D005447 4.1e-151 538.1 286 100.0
CDE01G0338 Ceratophyllum demersum HOM05D000618 ORTHO05D000454 1.5e-44 184.1 122 77.9
CDE01G0513 Ceratophyllum demersum HOM05D002174 ORTHO05D005447 7.0e-26 122.1 106 67.9
MBI19_g33853_MAGBIO Magnolia biondii HOM05D000618 ORTHO05D000454 3.6e-22 109.8 203 37.4
Migut.N00049 Erythranthe guttata HOM05D002174 ORTHO05D005447 5.4e-18 95.9 127 47.2
arahy.Tifrunner.gnm1.ann1.XZ5MVW Arachis hypogaea HOM05D002174 ORTHO05D005447 2.7e-17 93.6 131 45.8
Oeu016484.2 Olea europaea HOM05D002174 ORTHO05D005447 3.5e-17 93.2 130 45.4
TAR636G3310 Trochodendron aralioides HOM05D002174 ORTHO05D005447 3.5e-17 93.2 126 48.4
Lalb_Chr13g0298411 Lupinus albus HOM05D002174 ORTHO05D005447 4.5e-17 92.8 130 46.2
Ca_21451_v3 Cicer arietinum L. HOM05D002174 ORTHO05D005447 7.7e-17 92.0 131 46.6
Lj4g0009380 Lotus japonicus HOM05D002174 ORTHO05D005447 7.7e-17 92.0 131 46.6
Lj3C829T9 Lonicera japonica HOM05D002174 ORTHO05D005447 1.0e-16 91.7 126 47.6
Psat0s2066g0040 Pisum sativum HOM05D002174 ORTHO05D005447 1.0e-16 91.7 66 72.7
Cpa.g.sc9.88 Carica papaya HOM05D002174 ORTHO05D005447 1.3e-16 91.3 131 43.5
CiPaw.01G139900 Carya illinoinensis HOM05D002174 ORTHO05D005447 1.3e-16 91.3 67 71.6
Nn3g21677 Nelumbo nucifera HOM05D002174 ORTHO05D005447 1.7e-16 90.9 66 74.2
MSTRG.3864 Avicennia marina HOM05D002174 ORTHO05D005447 2.2e-16 90.5 132 43.9
Haze_01275 Corylus avellana HOM05D002174 ORTHO05D005447 2.2e-16 90.5 131 45.0
DCAR_027009 Daucus carota HOM05D002174 ORTHO05D005447 2.2e-16 90.5 130 44.6
Oeu033900.1 Olea europaea HOM05D002174 ORTHO05D005447 2.2e-16 90.5 66 68.2
RcHm_v2.0_Chr4g0424511 Rosa chinensis HOM05D002174 ORTHO05D005447 2.2e-16 90.5 132 44.7
TWI09G1315 Tripterygium wilfordii HOM05D002174 ORTHO05D005447 2.2e-16 90.5 131 45.0
Dinv15195 Davidia involucrata HOM05D002174 ORTHO05D005447 3.8e-16 89.7 118 45.8
Eucgr.A00350 Eucalyptus grandis HOM05D002174 ORTHO05D005447 3.8e-16 89.7 131 45.0
FAN12G1286 Fragaria x ananassa HOM05D002174 ORTHO05D005447 3.8e-16 89.7 121 45.5
Cfa015340 Carpinus fangiana HOM05D002174 ORTHO05D005447 5.0e-16 89.4 131 44.3
Lalb_Chr07g0182101 Lupinus albus HOM05D002174 ORTHO05D005447 5.0e-16 89.4 131 44.3
Nitab4.5_0003294g0030 Nicotiana tabacum HOM05D002174 ORTHO05D005447 5.0e-16 89.4 122 43.4
arahy.Tifrunner.gnm1.ann1.LMI6R7 Arachis hypogaea HOM05D002174 ORTHO05D005447 6.5e-16 89.0 66 71.2
Cc03_g01000 Coffea canephora HOM05D002174 ORTHO05D005447 6.5e-16 89.0 66 68.2
FvH4_4g19460 Fragaria vesca HOM05D002174 ORTHO05D005447 6.5e-16 89.0 123 44.7
arahy.Tifrunner.gnm1.ann1.UNW18Y Arachis hypogaea HOM05D002174 ORTHO05D005447 8.5e-16 88.6 66 69.7
PSO210G4136 Papaver somniferum HOM05D002174 ORTHO05D005447 8.5e-16 88.6 58 70.7
PSO761G0631 Papaver somniferum HOM05D002174 ORTHO05D005447 8.5e-16 88.6 58 70.7
GSVIVG01035019001 Vitis vinifera HOM05D002174 ORTHO05D005447 8.5e-16 88.6 131 44.3
ATR0707G001 Amborella trichopoda HOM05D002174 ORTHO05D005447 1.1e-15 88.2 66 66.7
Solyc01g060070.3 Solanum lycopersicum HOM05D002174 ORTHO05D005447 1.1e-15 88.2 130 43.8
Sopen01g026250 Solanum pennellii HOM05D002174 ORTHO05D005447 1.1e-15 88.2 130 43.8
TAR365G0957 Trochodendron aralioides HOM05D002174 ORTHO05D005447 1.1e-15 88.2 66 69.7
QL06p011615 Quercus lobata HOM05D002174 ORTHO05D005447 1.5e-15 87.8 132 44.7
Aqoxy2G02777 Aquilegia oxysepala HOM05D002174 ORTHO05D005447 1.9e-15 87.4 123 41.5
CAN.G197.4 Capsicum annuum HOM05D002174 ORTHO05D005447 1.9e-15 87.4 130 43.8
Glyma.09G037800 Glycine max HOM05D002174 ORTHO05D005447 1.9e-15 87.4 131 44.3
Nitab4.5_0001414g0010 Nicotiana tabacum HOM05D002174 ORTHO05D005447 1.9e-15 87.4 58 69.0
Ca_01872_v3 Cicer arietinum L. HOM05D002174 ORTHO05D005447 2.5e-15 87.0 126 43.7
Lj6g0023775 Lotus japonicus HOM05D002174 ORTHO05D005447 2.5e-15 87.0 66 69.7
Peaxi162Scf00065g00015 Petunia axillaris HOM05D002174 ORTHO05D005447 2.5e-15 87.0 124 41.9
Potri.010G142300 Populus trichocarpa HOM05D002174 ORTHO05D005447 2.5e-15 87.0 66 68.2
PGSC0003DMG400026692 Solanum tuberosum HOM05D002174 ORTHO05D005447 2.5e-15 87.0 130 43.1
Thecc.04G297400 Theobroma cacao HOM05D002174 ORTHO05D005447 2.5e-15 87.0 66 68.2
FAN07G2201 Fragaria x ananassa HOM05D002174 ORTHO05D005447 3.2e-15 86.7 58 70.7
Glyma.15G142900 Glycine max HOM05D002174 ORTHO05D005447 3.2e-15 86.7 127 44.9
Phvul.009G255100 Phaseolus vulgaris HOM05D002174 ORTHO05D005447 3.2e-15 86.7 130 43.8
CSS0048523 Camellia sinensis var. sinensis HOM05D002174 ORTHO05D005447 4.2e-15 86.3 131 44.3
Duzib151G0365 Durio zibethinus HOM05D002174 ORTHO05D005447 4.2e-15 86.3 66 68.2
Medtr4g121900 Medicago truncatula HOM05D002174 ORTHO05D005447 4.2e-15 86.3 66 68.2
HPP92_001059 Vanilla planifolia HOM05D002174 ORTHO05D005447 4.2e-15 86.3 133 42.1
HPP92_001148 Vanilla planifolia HOM05D002174 ORTHO05D005447 4.2e-15 86.3 133 42.1
Lalb_Chr06g0165391 Lupinus albus HOM05D002174 ORTHO05D005447 5.5e-15 85.9 66 66.7
Manes.15G005500 Manihot esculenta HOM05D002174 ORTHO05D005447 5.5e-15 85.9 66 66.7
PGR031G3841 Punica granatum HOM05D002174 ORTHO05D005447 5.5e-15 85.9 129 43.4
vmacro15190 Vaccinium macrocarpon HOM05D002174 ORTHO05D005447 5.5e-15 85.9 97 53.6
VMungo1309G3089 Vigna mungo HOM05D002174 ORTHO05D005447 5.5e-15 85.9 130 43.8
Medtr2g034550 Medicago truncatula HOM05D002174 ORTHO05D005447 7.2e-15 85.5 65 63.1
Psat3g002000 Pisum sativum HOM05D002174 ORTHO05D005447 7.2e-15 85.5 66 66.7
SalBow5G1439 Salvia bowleyana HOM05D002174 ORTHO05D005447 7.2e-15 85.5 58 67.2
TPR.G16828 Trifolium pratense HOM05D002174 ORTHO05D005447 7.2e-15 85.5 65 67.7
Ciclev10006030m.g Citrus clementina HOM05D002174 ORTHO05D005447 9.5e-15 85.1 66 63.6
Dinv44304 Davidia involucrata HOM05D002174 ORTHO05D005447 9.5e-15 85.1 128 43.8
Atru.chr4.2988 Acer truncatum HOM05D002174 ORTHO05D005447 1.2e-14 84.7 67 65.7
Actinidia40361 Actinidia chinensis HOM05D002174 ORTHO05D005447 1.6e-14 84.3 131 43.5
Rhsim02G0005200 Rhododendron simsii HOM05D002174 ORTHO05D005447 1.6e-14 84.3 66 68.2
Sabra08G0081100 Salix brachista HOM05D002174 ORTHO05D005447 1.6e-14 84.3 65 66.2
Sabra10G0110000 Salix brachista HOM05D002174 ORTHO05D005447 1.6e-14 84.3 132 40.9
Sed0011045 Sechium edule HOM05D002174 ORTHO05D005447 1.6e-14 84.3 67 64.2
Lsat_1_v5_gn_6_114360 Lactuca sativa HOM05D002174 ORTHO05D005447 2.1e-14 84.0 124 46.0
Lj6A689T51 Lonicera japonica HOM05D002174 ORTHO05D005447 2.1e-14 84.0 66 65.2
Prupe.1G122200 Prunus persica HOM05D002174 ORTHO05D005447 2.1e-14 84.0 133 43.6
Actinidia14262 Actinidia chinensis HOM05D002174 ORTHO05D005447 2.8e-14 83.6 131 43.5
Migut.G00088 Erythranthe guttata HOM05D002174 ORTHO05D005447 3.6e-14 83.2 66 60.6
Actinidia15593 Actinidia chinensis HOM05D002174 ORTHO05D005447 4.7e-14 82.8 67 65.7
MD13G1156400 Malus domestica HOM05D002174 ORTHO05D005447 4.7e-14 82.8 67 68.7
Potri.008G107200 Populus trichocarpa HOM05D002174 ORTHO05D005447 4.7e-14 82.8 66 66.7
THA.LOC104820299 Tarenaya hassleriana HOM05D002174 ORTHO05D005447 4.7e-14 82.8 67 62.7
HanXRQChr05g0145771 Helianthus annuus HOM05D002174 ORTHO05D005447 8.0e-14 82.0 58 65.5
MD16G1157300 Malus domestica HOM05D002174 ORTHO05D005447 8.0e-14 82.0 133 42.9
unitig_32.g10635 Utricularia gibba HOM05D002174 ORTHO05D005447 1.0e-13 81.6 118 40.7
vmacro08063 Vaccinium macrocarpon HOM05D002174 ORTHO05D005447 1.0e-13 81.6 67 64.2
Atru.chr5.1016 Acer truncatum HOM05D000618 ORTHO05D000454 1.8e-13 80.9 159 37.1
EL10Ac3g05462 Beta vulgaris HOM05D002174 ORTHO05D005447 1.8e-13 80.9 121 40.5
ECA246G2588 Erigeron canadensis HOM05D002174 ORTHO05D005447 1.8e-13 80.9 82 56.1
Glyma.07G241400 Glycine max HOM05D002174 ORTHO05D005447 3.0e-13 80.1 131 42.0
SalBow8G1198 Salvia bowleyana HOM05D002174 ORTHO05D005447 3.0e-13 80.1 126 40.5
SalBow8G1617 Salvia bowleyana HOM05D002174 ORTHO05D005447 3.0e-13 80.1 126 40.5
Rhsim04G0234100 Rhododendron simsii HOM05D002174 ORTHO05D005447 5.2e-13 79.3 67 62.7
Os03g0305600 Oryza sativa ssp. japonica HOM05D002174 ORTHO05D005447 8.8e-13 78.6 81 51.9
CsaV3_6G022380 Cucumis sativus L. HOM05D002174 ORTHO05D005447 1.2e-12 78.2 67 59.7
ECA233G3490 Erigeron canadensis HOM05D002174 ORTHO05D005447 1.2e-12 78.2 131 41.2
THA.LOC104802605 Tarenaya hassleriana HOM05D002174 ORTHO05D005447 1.2e-12 78.2 68 61.8
A08p12370 Brassica napus HOM05D002174 ORTHO05D005447 1.5e-12 77.8 107 45.8
BraA08t33218Z Brassica rapa HOM05D002174 ORTHO05D005447 1.5e-12 77.8 107 45.8
Lsat_1_v5_gn_6_18361 Lactuca sativa HOM05D002174 ORTHO05D005447 1.5e-12 77.8 107 45.8
Zm00001eb014550 Zea mays HOM05D002174 ORTHO05D005447 1.5e-12 77.8 81 54.3
Aa31LG10G5960 Aethionema arabicum HOM05D002174 ORTHO05D005447 4.4e-12 76.3 68 58.8
Gohir.A09G235200 Gossypium hirsutum HOM05D002174 ORTHO05D005447 4.4e-12 76.3 66 59.1
Gohir.D09G236000 Gossypium hirsutum HOM05D002174 ORTHO05D005447 4.4e-12 76.3 66 59.1
Gorai.006G259100 Gossypium raimondii HOM05D002174 ORTHO05D005447 4.4e-12 76.3 66 59.1
C08p00120 Brassica napus HOM05D000618 ORTHO05D000454 5.7e-12 75.9 150 35.3
HanXRQChr13g0395301 Helianthus annuus HOM05D002174 ORTHO05D005447 5.7e-12 75.9 111 45.0
Gohir.A10G171200 Gossypium hirsutum HOM05D002174 ORTHO05D005447 7.5e-12 75.5 66 57.6
AUR62016131 Chenopodium quinoa HOM05D002174 ORTHO05D005447 1.3e-11 74.7 117 39.3
AUR62041404 Chenopodium quinoa HOM05D002174 ORTHO05D005447 1.3e-11 74.7 58 60.3
Sc25g0003390 Simmondsia chinensis HOM05D002174 ORTHO05D005447 1.7e-11 74.3 102 42.2
SGA_v2.0_scaffold376G50282 Striga asiatica HOM05D000618 ORTHO05D000454 3.7e-11 73.2 173 34.1
Gohir.D10G178300 Gossypium hirsutum HOM05D002174 ORTHO05D005447 4.9e-11 72.8 66 57.6
Gorai.011G199300 Gossypium raimondii HOM05D002174 ORTHO05D005447 4.9e-11 72.8 66 57.6
Carub.0007s2539 Capsella rubella HOM05D002174 ORTHO05D005447 6.3e-11 72.4 69 59.4
BcaB04g18368 Brassica carinata HOM05D002174 ORTHO05D005447 1.1e-10 71.6 69 59.4
BcaC09g50313 Brassica carinata HOM05D002174 ORTHO05D005447 1.1e-10 71.6 69 59.4
A01p21400 Brassica napus HOM05D002174 ORTHO05D005447 1.1e-10 71.6 69 59.4
C01p26740 Brassica napus HOM05D002174 ORTHO05D005447 1.1e-10 71.6 69 59.4
BolC1t02615H Brassica oleracea HOM05D002174 ORTHO05D005447 1.1e-10 71.6 69 59.4
BraA01t02045Z Brassica rapa HOM05D002174 ORTHO05D005447 1.1e-10 71.6 69 59.4
Sp7g14670 Schrenkiella parvula HOM05D002174 ORTHO05D005447 1.1e-10 71.6 69 56.5
BolC8t48340H Brassica oleracea HOM05D002174 ORTHO05D005447 1.8e-10 70.9 69 59.4
AL7G38950 Arabidopsis lyrata HOM05D002174 ORTHO05D005447 2.4e-10 70.5 69 59.4
TAR633G1555 Trochodendron aralioides HOM05D000618 ORTHO05D000454 2.4e-10 70.5 129 33.3
BcaC06g32992 Brassica carinata HOM05D002174 ORTHO05D005447 3.1e-10 70.1 53 64.2
Thhalv10026380m.g Eutrema salsugineum HOM05D002174 ORTHO05D005447 4.1e-10 69.7 69 55.1
Os01g0303300 Oryza sativa ssp. japonica HOM05D002174 ORTHO05D005447 4.1e-10 69.7 83 50.6
COL.COLO4_34650 Corchorus olitorius HOM05D002174 ORTHO05D005447 5.4e-10 69.3 67 56.7
CARHR222530 Cardamine hirsuta HOM05D002174 ORTHO05D005447 7.0e-10 68.9 70 54.3
Hund09626 Selenicereus undatus HOM05D000618 ORTHO05D000454 9.2e-10 68.6 155 31.0
AT4G16160 Arabidopsis thaliana HOM05D002174 ORTHO05D005447 1.2e-09 68.2 69 58.0
PSO357G0687 Papaver somniferum HOM05D000618 ORTHO05D000454 1.2e-09 68.2 128 37.5
SEGI_36733 Sequoiadendron giganteum HOM05D002174 ORTHO05D005447 1.2e-09 68.2 120 37.5
A03p49630 Brassica napus HOM05D002174 ORTHO05D005447 1.6e-09 67.8 129 35.7
BraA03t14062Z Brassica rapa HOM05D002174 ORTHO05D005447 1.6e-09 67.8 129 35.7
HPP92_004916 Vanilla planifolia HOM05D000618 ORTHO05D000454 2.0e-09 67.4 151 35.1
Zm00001eb130200 Zea mays HOM05D002174 ORTHO05D005447 2.0e-09 67.4 84 48.8
BcaC06g33460 Brassica carinata HOM05D002174 ORTHO05D005447 3.5e-09 66.6 76 52.6
BcaC07g37960 Brassica carinata HOM05D002174 ORTHO05D005447 3.5e-09 66.6 69 58.0
C07p47700 Brassica napus HOM05D002174 ORTHO05D005447 3.5e-09 66.6 76 52.6
BolC7t45295H Brassica oleracea HOM05D002174 ORTHO05D005447 3.5e-09 66.6 76 52.6
Mapoly0097s0034 Marchantia polymorpha HOM05D002174 ORTHO05D005941 3.5e-09 66.6 75 42.7
Mapoly0133s0032 Marchantia polymorpha HOM05D002174 ORTHO05D005941 4.5e-09 66.2 77 41.6
CSS0046628 Camellia sinensis var. sinensis HOM05D002174 ORTHO05D005447 1.0e-08 65.1 59 61.0
PSO170G2628 Papaver somniferum HOM05D000618 ORTHO05D000454 1.0e-08 65.1 128 37.5
Pp3c3_28050 Physcomitrium patens HOM05D002174 ORTHO05D005941 1.3e-08 64.7 77 40.3
AagrBONN_evm.TU.Sc2ySwM_117.346 Anthoceros agrestis HOM05D001717 ORTHO05D007217 1.7e-08 64.3 74 40.5
ClCG06G004650 Citrullus lanatus HOM05D002174 ORTHO05D005447 1.7e-08 64.3 82 47.6
Pp3c12_16880 Physcomitrium patens HOM05D002174 ORTHO05D005941 1.7e-08 64.3 77 39.0
Pp3c10_18330 Physcomitrium patens HOM05D002174 ORTHO05D005447 5.0e-08 62.8 79 43.0
MBI12_g12388_MAGBIO Magnolia biondii HOM05D002174 ORTHO05D005447 6.6e-08 62.4 102 41.2
TAR362G0516 Trochodendron aralioides HOM05D000618 ORTHO05D000454 6.6e-08 62.4 116 33.6
Lj5g0027995 Lotus japonicus HOM05D000618 ORTHO05D000454 8.6e-08 62.0 117 32.5
MBI19_g46781_MAGBIO Magnolia biondii HOM05D000618 ORTHO05D000454 1.5e-07 61.2 148 30.4
SMO147G0258 Selaginella moellendorffii HOM05D002174 ORTHO05D005941 1.5e-07 61.2 61 44.3
SMO358G0445 Selaginella moellendorffii HOM05D002174 ORTHO05D005941 1.5e-07 61.2 82 34.1
SEGI_00670 Sequoiadendron giganteum HOM05D002174 ORTHO05D005941 1.5e-07 61.2 58 44.8
CiPaw.08G090400 Carya illinoinensis HOM05D000618 ORTHO05D000454 1.9e-07 60.8 129 34.1
FAN21G3326 Fragaria x ananassa HOM05D002174 ORTHO05D005447 4.3e-07 59.7 46 63.0
Glyma.03G219000 Glycine max HOM05D000618 ORTHO05D000454 4.3e-07 59.7 103 35.0
MBI18_g31666_MAGBIO Magnolia biondii HOM05D000618 ORTHO05D000454 7.3e-07 58.9 102 43.1
Medtr1g087150 Medicago truncatula HOM05D000618 ORTHO05D000454 7.3e-07 58.9 135 32.6
PGR119G2250 Punica granatum HOM05D002174 ORTHO05D005941 1.2e-06 58.2 59 39.0
Ca_10288_v3 Cicer arietinum L. HOM05D000618 ORTHO05D000454 1.6e-06 57.8 100 34.0
Duzib211G0193 Durio zibethinus HOM05D000618 ORTHO05D000454 1.6e-06 57.8 102 36.3
Mapoly0051s0077 Marchantia polymorpha HOM05D002174 ORTHO05D005941 2.1e-06 57.4 69 37.7
Os05g0111200 Oryza sativa ssp. japonica HOM05D002174 ORTHO05D005941 2.1e-06 57.4 59 39.0
FAN18G2626 Fragaria x ananassa HOM05D000618 ORTHO05D000454 2.8e-06 57.0 160 31.2
Lj1g0006144 Lotus japonicus HOM05D000618 ORTHO05D000454 2.8e-06 57.0 103 35.0
Lalb_Chr02g0146791 Lupinus albus HOM05D000618 ORTHO05D000454 2.8e-06 57.0 156 30.1
SMO358G0166 Selaginella moellendorffii HOM05D002174 ORTHO05D005941 2.8e-06 57.0 58 37.9
FAN08G3388 Fragaria x ananassa HOM05D000618 ORTHO05D000454 3.6e-06 56.6 158 29.7
MBI14_g20104_MAGBIO Magnolia biondii HOM05D002174 ORTHO05D005941 3.6e-06 56.6 96 33.3
Atru.chr3.3905 Acer truncatum HOM05D002174 ORTHO05D005941 4.7e-06 56.2 53 39.6
arahy.Tifrunner.gnm1.ann1.YZ6HK5 Arachis hypogaea HOM05D000618 ORTHO05D000454 4.7e-06 56.2 89 37.1
Nn3g21674 Nelumbo nucifera HOM05D000618 ORTHO05D000454 4.7e-06 56.2 114 35.1
Pp3c3_19150 Physcomitrium patens HOM05D002174 ORTHO05D005941 6.1e-06 55.8 58 37.9
TAR636G3015 Trochodendron aralioides HOM05D002174 ORTHO05D005941 6.1e-06 55.8 102 31.4
Pp3c17_23180 Physcomitrium patens HOM05D002174 ORTHO05D005941 8.0e-06 55.5 51 41.2


User provided reference genes

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