Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE12G0116 Ceratophyllum demersum HOM05D004708 ORTHO05D005573 4.1e-96 354.8 185 100.0
CDE01G0816 Ceratophyllum demersum HOM05D004708 ORTHO05D005573 1.2e-84 316.6 183 89.1
Os07g0179400 Oryza sativa ssp. japonica HOM05D004708 ORTHO05D005573 3.9e-62 241.9 152 78.9
TAR624G0473 Trochodendron aralioides HOM05D004708 ORTHO05D005573 7.4e-61 237.7 173 71.7
HPP92_014750 Vanilla planifolia HOM05D004708 ORTHO05D005573 1.8e-59 233.0 160 75.0
ATR0796G251 Amborella trichopoda HOM05D004708 ORTHO05D005573 1.2e-58 230.3 174 69.5
Ciclev10026600m.g Citrus clementina HOM05D004708 ORTHO05D005573 1.0e-57 227.3 168 69.6
Manes.01G136850 Manihot esculenta HOM05D004708 ORTHO05D005573 4.9e-57 224.9 152 72.4
Atru.chr3.607 Acer truncatum HOM05D004708 ORTHO05D005573 1.9e-56 223.0 155 71.6
Aa31LG8G15760 Aethionema arabicum HOM05D004708 ORTHO05D005573 1.9e-56 223.0 166 66.9
MD15G1258400 Malus domestica HOM05D004708 ORTHO05D005573 2.5e-56 222.6 165 68.5
Gorai.008G067200 Gossypium raimondii HOM05D004708 ORTHO05D005573 7.1e-56 221.1 150 73.3
HanXRQChr09g0261341 Helianthus annuus HOM05D004708 ORTHO05D005573 7.1e-56 221.1 152 73.7
MD02G1144700 Malus domestica HOM05D004708 ORTHO05D005573 9.3e-56 220.7 165 66.7
Cpa.g.sc6.137 Carica papaya HOM05D004708 ORTHO05D005573 1.6e-55 219.9 157 70.1
Cc07_g09720 Coffea canephora HOM05D004708 ORTHO05D005573 1.6e-55 219.9 166 66.9
AT2G18250 Arabidopsis thaliana HOM05D004708 ORTHO05D005573 2.1e-55 219.5 152 69.1
COL.COLO4_34048 Corchorus olitorius HOM05D004708 ORTHO05D005573 2.1e-55 219.5 152 71.1
Lsat_1_v5_gn_4_148240 Lactuca sativa HOM05D004708 ORTHO05D005573 2.1e-55 219.5 162 68.5
AL3G51520 Arabidopsis lyrata HOM05D004708 ORTHO05D005573 3.5e-55 218.8 152 69.1
ECA232G2192 Erigeron canadensis HOM05D004708 ORTHO05D005573 3.5e-55 218.8 159 71.1
QL06p046600 Quercus lobata HOM05D004708 ORTHO05D005573 3.5e-55 218.8 159 67.9
BcaC06g36391 Brassica carinata HOM05D004708 ORTHO05D005573 4.6e-55 218.4 162 66.0
BolC9t54282H Brassica oleracea HOM05D004708 ORTHO05D005573 4.6e-55 218.4 162 64.2
FvH4_1g13011 Fragaria vesca HOM05D004708 ORTHO05D005573 4.6e-55 218.4 171 65.5
BcaC04g22917 Brassica carinata HOM05D004708 ORTHO05D005573 6.0e-55 218.0 162 64.2
BolC7t40861H Brassica oleracea HOM05D004708 ORTHO05D005573 6.0e-55 218.0 167 64.7
A07p02450 Brassica napus HOM05D004708 ORTHO05D005573 7.9e-55 217.6 167 64.1
BraA07t28041Z Brassica rapa HOM05D004708 ORTHO05D005573 7.9e-55 217.6 167 64.1
Aqoxy5G01592 Aquilegia oxysepala HOM05D004708 ORTHO05D005573 1.0e-54 217.2 152 71.7
C07p04600 Brassica napus HOM05D004708 ORTHO05D005573 1.3e-54 216.9 167 64.1
Carub.0003s3243 Capsella rubella HOM05D004708 ORTHO05D005573 1.3e-54 216.9 161 67.1
DCAR_032374 Daucus carota HOM05D004708 ORTHO05D005573 2.3e-54 216.1 171 63.2
RcHm_v2.0_Chr2g0101171 Rosa chinensis HOM05D004708 ORTHO05D005573 2.3e-54 216.1 179 64.2
GSVIVG01018936001 Vitis vinifera HOM05D004708 ORTHO05D005573 2.3e-54 216.1 150 70.7
Sp3g31670 Schrenkiella parvula HOM05D004708 ORTHO05D005573 3.0e-54 215.7 165 64.8
TWI53G1618 Tripterygium wilfordii HOM05D004708 ORTHO05D005573 3.0e-54 215.7 153 68.6
SEGI_37374 Sequoiadendron giganteum HOM05D004708 ORTHO05D005573 3.9e-54 215.3 164 68.9
Solyc02g062640.4 Solanum lycopersicum HOM05D004708 ORTHO05D005573 3.9e-54 215.3 149 71.1
DCAR_023857 Daucus carota HOM05D004708 ORTHO05D005573 5.1e-54 214.9 152 69.7
Thhalv10022875m.g Eutrema salsugineum HOM05D004708 ORTHO05D005573 6.7e-54 214.5 165 64.8
Prupe.7G156900 Prunus persica HOM05D004708 ORTHO05D005573 6.7e-54 214.5 155 70.3
Thecc.03G010200 Theobroma cacao HOM05D004708 ORTHO05D005573 6.7e-54 214.5 150 71.3
Manes.02G095600 Manihot esculenta HOM05D004708 ORTHO05D005573 8.7e-54 214.2 157 68.8
MSTRG.23511 Avicennia marina HOM05D004708 ORTHO05D005573 1.1e-53 213.8 165 67.3
ClCG05G006010 Citrullus lanatus HOM05D000319 ORTHO05D000903 1.1e-53 213.8 165 65.5
Peaxi162Scf00008g03516 Petunia axillaris HOM05D004708 ORTHO05D005573 1.1e-53 213.8 156 66.0
Hund16439 Selenicereus undatus HOM05D004708 ORTHO05D005573 1.1e-53 213.8 149 71.8
Dinv13509 Davidia involucrata HOM05D004708 ORTHO05D005573 1.5e-53 213.4 157 67.5
COL.COLO4_22050 Corchorus olitorius HOM05D004708 ORTHO05D005573 1.9e-53 213.0 163 66.9
Sopen02g013670 Solanum pennellii HOM05D004708 ORTHO05D005573 2.5e-53 212.6 149 70.5
PGSC0003DMG400015508 Solanum tuberosum HOM05D004708 ORTHO05D005573 2.5e-53 212.6 156 67.3
CAN.G111.48 Capsicum annuum HOM05D004708 ORTHO05D005573 3.3e-53 212.2 163 66.9
CARHR108820 Cardamine hirsuta HOM05D004708 ORTHO05D005573 3.3e-53 212.2 152 67.1
BcaB03g16615 Brassica carinata HOM05D004708 ORTHO05D005573 4.3e-53 211.8 167 62.9
Sc16g0002660 Simmondsia chinensis HOM05D004708 ORTHO05D005573 4.3e-53 211.8 157 66.2
vmacro17822 Vaccinium macrocarpon HOM05D004708 ORTHO05D005573 4.3e-53 211.8 154 68.2
Rhsim08G0118600 Rhododendron simsii HOM05D004708 ORTHO05D005573 5.7e-53 211.5 152 69.7
EL10Ac6g15543 Beta vulgaris HOM05D004708 ORTHO05D005573 1.3e-52 210.3 159 69.2
BcaB07g31677 Brassica carinata HOM05D004708 ORTHO05D005573 1.3e-52 210.3 162 62.3
Nitab4.5_0000136g0310 Nicotiana tabacum HOM05D004708 ORTHO05D005573 1.3e-52 210.3 174 60.9
Actinidia19193 Actinidia chinensis HOM05D004708 ORTHO05D005573 1.6e-52 209.9 165 66.1
GSVIVG01025946001 Vitis vinifera HOM05D004708 ORTHO05D005573 2.8e-52 209.1 148 70.9
Duzib084G0089 Durio zibethinus HOM05D004708 ORTHO05D005573 3.7e-52 208.8 165 65.5
CAN.G1645.15 Capsicum annuum HOM05D004708 ORTHO05D005573 4.8e-52 208.4 161 65.8
CiPaw.01G043700 Carya illinoinensis HOM05D004708 ORTHO05D005573 6.3e-52 208.0 163 66.3
Lsat_1_v5_gn_2_77221 Lactuca sativa HOM05D004708 ORTHO05D005573 6.3e-52 208.0 162 66.7
Thecc.01G032800 Theobroma cacao HOM05D004708 ORTHO05D005573 6.3e-52 208.0 155 66.5
CSS0040556 Camellia sinensis var. sinensis HOM05D004708 ORTHO05D005573 8.2e-52 207.6 170 64.1
Duzib264G1087 Durio zibethinus HOM05D004708 ORTHO05D005573 1.1e-51 207.2 163 64.4
Lj2g0001027 Lotus japonicus HOM05D002605 ORTHO05D002842 1.1e-51 207.2 170 64.7
PSO339G0290 Papaver somniferum HOM05D004708 ORTHO05D005573 1.1e-51 207.2 160 65.6
PSO764G0091 Papaver somniferum HOM05D004708 ORTHO05D005573 1.1e-51 207.2 163 64.4
PGR119G0658 Punica granatum HOM05D004708 ORTHO05D005573 1.4e-51 206.8 163 66.3
SalBow6G2211 Salvia bowleyana HOM05D004708 ORTHO05D005573 1.4e-51 206.8 166 64.5
Hund13990 Selenicereus undatus HOM05D004708 ORTHO05D005573 1.4e-51 206.8 157 66.2
unitig_21.g20250 Utricularia gibba HOM05D004708 ORTHO05D005573 2.4e-51 206.1 167 62.3
CsaV3_3G014460 Cucumis sativus L. HOM05D004708 ORTHO05D005573 3.1e-51 205.7 166 65.7
AUR62007583 Chenopodium quinoa HOM05D004708 ORTHO05D005573 4.1e-51 205.3 162 65.4
CSS0030971 Camellia sinensis var. sinensis HOM05D004708 ORTHO05D005573 5.3e-51 204.9 149 67.8
arahy.Tifrunner.gnm1.ann1.V6C6W3 Arachis hypogaea HOM05D004708 ORTHO05D005573 6.9e-51 204.5 161 65.8
AUR62004070 Chenopodium quinoa HOM05D004708 ORTHO05D005573 6.9e-51 204.5 149 67.8
Ca_24863_v3 Cicer arietinum L. HOM05D004708 ORTHO05D005573 6.9e-51 204.5 154 67.5
ECA238G4849 Erigeron canadensis HOM05D004708 ORTHO05D005573 6.9e-51 204.5 152 69.1
MD15G1258500 Malus domestica HOM05D004708 ORTHO05D005573 6.9e-51 204.5 155 65.8
Aqoxy3G01739 Aquilegia oxysepala HOM05D004708 ORTHO05D005573 9.0e-51 204.1 170 60.6
Gohir.A09G170800 Gossypium hirsutum HOM05D004708 ORTHO05D005573 9.0e-51 204.1 149 68.5
Phvul.002G032200 Phaseolus vulgaris HOM05D004708 ORTHO05D005573 9.0e-51 204.1 162 63.6
arahy.Tifrunner.gnm1.ann1.Y7U3HW Arachis hypogaea HOM05D004708 ORTHO05D005573 1.2e-50 203.8 161 65.2
Psat2g158360 Pisum sativum HOM05D004708 ORTHO05D005573 1.5e-50 203.4 154 67.5
Migut.H00962 Erythranthe guttata HOM05D004708 ORTHO05D005573 2.0e-50 203.0 153 68.0
Gorai.006G188300 Gossypium raimondii HOM05D004708 ORTHO05D005573 3.4e-50 202.2 149 67.8
Hma1.2p1_0789F.1_g218250 Hydrangea macrophylla HOM05D004708 ORTHO05D005573 5.9e-50 201.4 164 64.6
Potri.005G121200 Populus trichocarpa HOM05D004708 ORTHO05D005573 5.9e-50 201.4 172 62.8
arahy.Tifrunner.gnm1.ann1.CZ32YF Arachis hypogaea HOM05D004708 ORTHO05D005573 7.6e-50 201.1 161 65.2
Medtr8g073890 Medicago truncatula HOM05D004708 ORTHO05D005573 7.6e-50 201.1 168 62.5
MELO3C006648.2 Cucumis melo HOM05D004708 ORTHO05D005573 1.7e-49 199.9 165 63.6
Medtr5g020680 Medicago truncatula HOM05D004708 ORTHO05D005573 2.2e-49 199.5 172 59.9
SGA_v2.0_scaffold258G45779 Striga asiatica HOM05D004708 ORTHO05D005573 2.2e-49 199.5 158 63.9
Ca_21297_v3 Cicer arietinum L. HOM05D004708 ORTHO05D005573 5.0e-49 198.4 152 66.4
TPR.G2405 Trifolium pratense HOM05D004708 ORTHO05D005573 8.5e-49 197.6 154 64.9
THA.LOC104807464 Tarenaya hassleriana HOM05D004708 ORTHO05D005573 1.4e-48 196.8 184 57.6
Hma1.2p1_0224F.1_g094553 Hydrangea macrophylla HOM05D004708 ORTHO05D005573 1.9e-48 196.4 152 65.1
Glyma.01G173050 Glycine max HOM05D004708 ORTHO05D005573 2.5e-48 196.1 152 65.8
VMungo1215G3002 Vigna mungo HOM05D004708 ORTHO05D005573 5.5e-48 194.9 152 63.8
Lalb_Chr05g0212721 Lupinus albus HOM05D004708 ORTHO05D005573 9.3e-48 194.1 152 66.4
FAN19G0555 Fragaria x ananassa HOM05D004708 ORTHO05D005573 2.7e-47 192.6 204 54.4
Zm00001eb231510 Zea mays HOM05D004708 ORTHO05D005573 7.9e-47 191.0 150 63.3
arahy.Tifrunner.gnm1.ann1.KFYL3R Arachis hypogaea HOM05D004708 ORTHO05D005573 2.3e-46 189.5 161 63.4
Pp3c18_16890 Physcomitrium patens HOM05D004708 ORTHO05D005573 8.7e-46 187.6 150 62.7
SMO357G0013 Selaginella moellendorffii HOM05D004708 ORTHO05D005573 1.1e-45 187.2 148 65.5
FAN25G0668 Fragaria x ananassa HOM05D004708 ORTHO05D005573 1.5e-45 186.8 167 56.9
Gohir.A12G064100 Gossypium hirsutum HOM05D004708 ORTHO05D005573 3.3e-45 185.7 150 64.0
SMO318G0001 Selaginella moellendorffii HOM05D004708 ORTHO05D005573 3.3e-45 185.7 164 60.4
Zm00001eb301320 Zea mays HOM05D004708 ORTHO05D005573 5.3e-43 178.3 153 63.4
FAN21G0333 Fragaria x ananassa HOM05D004708 ORTHO05D005573 6.9e-43 177.9 173 53.2
Mapoly0065s0018 Marchantia polymorpha HOM05D004708 ORTHO05D005573 2.6e-42 176.0 158 59.5
Sabra05G0099900 Salix brachista HOM05D004708 ORTHO05D005573 1.7e-41 173.3 216 49.5
Nn7g38122 Nelumbo nucifera HOM05D004708 ORTHO05D005573 3.8e-41 172.2 109 78.0
BcaC04g22919 Brassica carinata HOM05D004708 ORTHO05D005573 1.1e-40 170.6 190 48.9
Hma1.2p1_1820F.1_g304110 Hydrangea macrophylla HOM05D004708 ORTHO05D005573 1.1e-40 170.6 138 63.0
Glyma.02G276900 Glycine max HOM05D004708 ORTHO05D005573 9.4e-40 167.5 129 63.6
A09p11790 Brassica napus HOM05D004708 ORTHO05D005573 7.9e-39 164.5 137 59.1
Dinv39998 Davidia involucrata HOM05D004708 ORTHO05D005573 5.1e-38 161.8 166 53.0
CARHR108850 Cardamine hirsuta HOM05D004708 ORTHO05D005573 6.7e-38 161.4 120 64.2
C09p13900 Brassica napus HOM05D004708 ORTHO05D005573 2.0e-37 159.8 162 51.2
CBR_g4476 Chara braunii HOM05D003322 ORTHO05D004228 2.6e-37 159.5 159 54.1
Gohir.D09G166500 Gossypium hirsutum HOM05D004708 ORTHO05D005573 2.6e-37 159.5 152 57.9
Lj2A454G55 Lonicera japonica HOM05D004708 ORTHO05D005573 8.2e-36 154.5 142 61.3
Gohir.D12G064000 Gossypium hirsutum HOM05D004708 ORTHO05D005573 3.1e-35 152.5 97 74.2
FvH4_3g26020 Fragaria vesca HOM05D004708 ORTHO05D005573 1.2e-34 150.6 138 53.6
PSO384G2349 Papaver somniferum HOM05D004708 ORTHO05D005573 1.0e-33 147.5 164 52.4
PSO731G0046 Papaver somniferum HOM05D004708 ORTHO05D005573 1.6e-31 140.2 112 64.3
Nitab4.5_0009165g0010 Nicotiana tabacum HOM05D000001 ORTHO05D013582 2.7e-31 139.4 109 64.2
CSS0019358 Camellia sinensis var. sinensis HOM05D004708 ORTHO05D005573 5.2e-30 135.2 109 64.2
Peaxi162Scf00130g00618 Petunia axillaris HOM05D004708 ORTHO05D005573 7.4e-29 131.3 164 47.0
AagrBONN_evm.TU.Sc2ySwM_228.2017 Anthoceros agrestis HOM05D004708 ORTHO05D005573 3.7e-28 129.0 108 63.9
BraA09t36827Z Brassica rapa HOM05D004708 ORTHO05D005573 6.3e-28 128.3 108 60.2
Os02g0134000 Oryza sativa ssp. japonica HOM05D004708 ORTHO05D005573 2.6e-26 122.9 114 58.8
FAN11G2897 Fragaria x ananassa HOM05D004708 ORTHO05D009899 1.3e-25 120.6 167 43.7
CAN.G2875.1 Capsicum annuum HOM05D004708 ORTHO05D005573 1.8e-22 110.2 82 69.5
Actinidia33865 Actinidia chinensis HOM05D004708 ORTHO05D005573 1.2e-21 107.5 86 66.3
Pp3c18_18790 Physcomitrium patens HOM05D004708 ORTHO05D005573 2.6e-21 106.3 150 41.3
FAN26G2067 Fragaria x ananassa HOM05D004708 ORTHO05D005573 9.7e-21 104.4 84 63.1
arahy.Tifrunner.gnm1.ann1.W5EA8A Arachis hypogaea HOM05D004708 ORTHO05D005573 8.2e-20 101.3 90 60.0
Cre13.g590550 Chlamydomonas reinhardtii HOM05D004708 ORTHO05D005573 1.1e-19 100.9 170 36.5
AagrBONN_evm.TU.Sc2ySwM_368.1168 Anthoceros agrestis HOM05D004708 ORTHO05D005573 1.0e-17 94.4 64 68.8
HanXRQChr17g0534461 Helianthus annuus HOM05D004708 ORTHO05D005573 6.1e-15 85.1 51 74.5
MCO08G231 Micromonas commoda HOM05D004708 ORTHO05D005573 8.8e-14 81.3 170 34.1
CAN.G53.14 Capsicum annuum HOM05D004708 ORTHO05D005573 2.6e-13 79.7 54 68.5
C09p74780 Brassica napus HOM05D004708 ORTHO05D005573 4.4e-13 79.0 59 61.0
C09p74830 Brassica napus HOM05D004708 ORTHO05D005573 4.4e-13 79.0 59 61.0
PRCOL_00004729 Prasinoderma coloniale HOM05D004708 ORTHO05D005573 6.3e-12 75.1 151 35.1
Cfa027114 Carpinus fangiana HOM05D004708 ORTHO05D005573 1.1e-11 74.3 194 26.8
BcaC06g36392 Brassica carinata HOM05D000492 ORTHO05D005571 1.4e-11 73.9 60 60.0
SGA_v2.0_scaffold276G46612 Striga asiatica HOM05D004708 ORTHO05D005573 2.9e-09 66.2 54 64.8
CAN.G53.15 Capsicum annuum HOM05D004708 ORTHO05D005573 5.0e-09 65.5 52 67.3
Oeu044133.1 Olea europaea HOM05D004708 ORTHO05D005573 8.6e-09 64.7 45 64.4


User provided reference genes

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