Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE12G0054 Ceratophyllum demersum HOM05D002924 ORTHO05D003122 3.6e-65 251.5 134 100.0
CDE01G0236 Ceratophyllum demersum HOM05D002924 ORTHO05D003122 5.0e-51 204.5 134 82.1
Gohir.D10G042800 Gossypium hirsutum HOM05D002924 ORTHO05D003122 1.6e-12 76.6 122 45.9
CsaV3_6G051810 Cucumis sativus L. HOM05D002924 ORTHO05D003122 2.1e-12 76.3 88 50.0
Gohir.A10G041900 Gossypium hirsutum HOM05D002924 ORTHO05D003122 2.1e-12 76.3 122 45.9
Gorai.011G045300 Gossypium raimondii HOM05D002924 ORTHO05D003122 2.1e-12 76.3 122 45.9
MELO3C007125.2 Cucumis melo HOM05D002924 ORTHO05D003122 3.5e-12 75.5 87 50.6
Duzib235G1474 Durio zibethinus HOM05D002924 ORTHO05D003122 3.5e-12 75.5 120 45.8
Sed0024828 Sechium edule HOM05D002924 ORTHO05D003122 3.5e-12 75.5 118 42.4
Gohir.D05G150200 Gossypium hirsutum HOM05D002924 ORTHO05D003122 4.6e-12 75.1 118 46.6
Gohir.D09G077300 Gossypium hirsutum HOM05D002924 ORTHO05D003122 4.6e-12 75.1 123 45.5
Gorai.006G092400 Gossypium raimondii HOM05D002924 ORTHO05D003122 4.6e-12 75.1 123 45.5
MBI02_g15229_MAGBIO Magnolia biondii HOM05D002924 ORTHO05D003122 6.0e-12 74.7 127 44.1
MBI02_g15230_MAGBIO Magnolia biondii HOM05D002924 ORTHO05D003122 6.0e-12 74.7 132 43.2
Duzib160G0328 Durio zibethinus HOM05D002924 ORTHO05D003122 1.0e-11 73.9 121 44.6
Gohir.A05G147700 Gossypium hirsutum HOM05D002924 ORTHO05D003122 1.7e-11 73.2 118 46.6
Psat1g194920 Pisum sativum HOM05D002924 ORTHO05D003122 1.7e-11 73.2 86 51.2
EL10Ac8g19657 Beta vulgaris HOM05D002924 ORTHO05D003122 2.3e-11 72.8 121 42.1
COL.COLO4_31051 Corchorus olitorius HOM05D002924 ORTHO05D003122 2.3e-11 72.8 119 44.5
Gorai.009G154300 Gossypium raimondii HOM05D002924 ORTHO05D003122 2.3e-11 72.8 118 46.6
Psat1g195000 Pisum sativum HOM05D002924 ORTHO05D003122 3.0e-11 72.4 86 51.2
Sed0007473 Sechium edule HOM05D002924 ORTHO05D003122 3.9e-11 72.0 131 41.2
Rhsim13G0114700 Rhododendron simsii HOM05D002924 ORTHO05D003122 6.6e-11 71.2 120 43.3
DCAR_007884 Daucus carota HOM05D002924 ORTHO05D003122 1.1e-10 70.5 132 43.2
Gohir.A09G077300 Gossypium hirsutum HOM05D002924 ORTHO05D003122 1.1e-10 70.5 124 42.7
Thecc.06G148600 Theobroma cacao HOM05D002924 ORTHO05D003122 1.1e-10 70.5 121 43.8
Nn4g26591 Nelumbo nucifera HOM05D002924 ORTHO05D003122 1.5e-10 70.1 137 41.6
Medtr2g019190 Medicago truncatula HOM05D002924 ORTHO05D003122 1.9e-10 69.7 98 50.0
ClCG01G024700 Citrullus lanatus HOM05D002924 ORTHO05D003122 2.5e-10 69.3 87 47.1
SalBow8G3543 Salvia bowleyana HOM05D002924 ORTHO05D003122 2.5e-10 69.3 118 41.5
TAR626G1845 Trochodendron aralioides HOM05D002924 ORTHO05D003122 2.5e-10 69.3 128 46.1
MBI18_g24474_MAGBIO Magnolia biondii HOM05D002924 ORTHO05D003122 3.3e-10 68.9 102 49.0
HanXRQChr15g0482111 Helianthus annuus HOM05D002924 ORTHO05D003122 4.3e-10 68.6 125 44.0
GSVIVG01021516001 Vitis vinifera HOM05D002924 ORTHO05D003122 4.3e-10 68.6 87 52.9
Solyc08g036640.3 Solanum lycopersicum HOM05D002924 ORTHO05D003122 5.6e-10 68.2 117 39.3
Sopen08g011400 Solanum pennellii HOM05D002924 ORTHO05D003122 5.6e-10 68.2 117 39.3
Potri.006G023301 Populus trichocarpa HOM05D002924 ORTHO05D003122 7.3e-10 67.8 119 44.5
TAR624G0146 Trochodendron aralioides HOM05D002924 ORTHO05D003122 7.3e-10 67.8 130 41.5
Ciclev10017198m.g Citrus clementina HOM05D002924 ORTHO05D003122 9.6e-10 67.4 126 44.4
Glyma.13G219100 Glycine max HOM05D002924 ORTHO05D003122 9.6e-10 67.4 87 48.3
TWI53G0343 Tripterygium wilfordii HOM05D002924 ORTHO05D003122 9.6e-10 67.4 85 52.9
VMungo0540G0736 Vigna mungo HOM05D002924 ORTHO05D003122 9.6e-10 67.4 86 47.7
GSVIVG01007188001 Vitis vinifera HOM05D002924 ORTHO05D003122 9.6e-10 67.4 94 46.8
GSVIVG01021514001 Vitis vinifera HOM05D002924 ORTHO05D003122 9.6e-10 67.4 83 50.6
Eucgr.E02416 Eucalyptus grandis HOM05D002924 ORTHO05D003122 1.2e-09 67.0 102 47.1
Lj6g0009882 Lotus japonicus HOM05D002924 ORTHO05D003122 1.2e-09 67.0 131 39.7
PSO675G3356 Papaver somniferum HOM05D002924 ORTHO05D003122 1.2e-09 67.0 127 44.1
Migut.H01355 Erythranthe guttata HOM05D002924 ORTHO05D003122 1.6e-09 66.6 119 41.2
Glyma.15G093100 Glycine max HOM05D002924 ORTHO05D003122 1.6e-09 66.6 112 41.1
MBI02_g15233_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 1.6e-09 66.6 112 44.6
Lsat_1_v5_gn_7_28101 Lactuca sativa HOM05D002924 ORTHO05D003122 2.1e-09 66.2 134 39.6
QL05p059253 Quercus lobata HOM05D002924 ORTHO05D003122 2.1e-09 66.2 127 41.7
TWI09G0754 Tripterygium wilfordii HOM05D002924 ORTHO05D003122 2.1e-09 66.2 118 41.5
Medtr8g107300 Medicago truncatula HOM05D002924 ORTHO05D003122 2.8e-09 65.9 118 43.2
PGSC0003DMG400008781 Solanum tuberosum HOM05D002924 ORTHO05D003122 2.8e-09 65.9 117 39.3
DCAR_003905 Daucus carota HOM05D002924 ORTHO05D003122 3.6e-09 65.5 90 46.7
TPR.G36164 Trifolium pratense HOM05D002924 ORTHO05D003122 3.6e-09 65.5 93 47.3
MD05G1282000 Malus domestica HOM05D002924 ORTHO05D003122 4.7e-09 65.1 108 43.5
Psat1g189800 Pisum sativum HOM05D002924 ORTHO05D003122 4.7e-09 65.1 125 41.6
PGSC0003DMG400008782 Solanum tuberosum HOM05D002924 ORTHO05D003122 4.7e-09 65.1 128 42.2
Dinv05213 Davidia involucrata HOM05D002924 ORTHO05D003122 6.2e-09 64.7 128 43.0
Glyma.05G141200 Glycine max HOM05D002924 ORTHO05D003122 6.2e-09 64.7 132 43.2
ECA236G5022 Erigeron canadensis HOM05D002924 ORTHO05D003122 8.1e-09 64.3 90 48.9
Peaxi162Scf00317g00121 Petunia axillaris HOM05D002924 ORTHO05D003122 8.1e-09 64.3 120 43.3
RcHm_v2.0_Chr5g0014391 Rosa chinensis HOM05D002924 ORTHO05D003122 8.1e-09 64.3 138 39.1
TAR488G0001 Trochodendron aralioides HOM05D002924 ORTHO05D003122 8.1e-09 64.3 124 45.2
arahy.Tifrunner.gnm1.ann1.IG3UT7 Arachis hypogaea HOM05D002924 ORTHO05D003122 1.1e-08 63.9 141 39.7
CiPaw.09G122300 Carya illinoinensis HOM05D002924 ORTHO05D003122 1.1e-08 63.9 85 48.2
THA.LOC104812674 Tarenaya hassleriana HOM05D002924 ORTHO05D003122 1.1e-08 63.9 119 37.8
Phvul.006G165800 Phaseolus vulgaris HOM05D002924 ORTHO05D003122 1.4e-08 63.5 123 38.2
Atru.chr10.1192 Acer truncatum HOM05D002924 ORTHO05D003122 1.8e-08 63.2 135 40.7
CANSAT35G0631 Cannabis sativa HOM05D002924 ORTHO05D003122 2.4e-08 62.8 100 44.0
Aqoxy1G01686 Aquilegia oxysepala HOM05D002924 ORTHO05D003122 3.1e-08 62.4 127 41.7
Dinv32237 Davidia involucrata HOM05D002924 ORTHO05D003122 3.1e-08 62.4 124 42.7
Lalb_Chr15g0086781 Lupinus albus HOM05D002924 ORTHO05D003122 3.1e-08 62.4 134 38.1
CARHR029250 Cardamine hirsuta HOM05D002924 ORTHO05D003122 4.0e-08 62.0 118 39.8
Cc00_g01970 Coffea canephora HOM05D002924 ORTHO05D003122 4.0e-08 62.0 86 46.5
Nitab4.5_0001531g0050 Nicotiana tabacum HOM05D002924 ORTHO05D003122 4.0e-08 62.0 89 44.9
Manes.15G122900 Manihot esculenta HOM05D002924 ORTHO05D003122 5.2e-08 61.6 137 40.9
PGR083G2757 Punica granatum HOM05D002924 ORTHO05D003122 5.2e-08 61.6 88 44.3
Sed0009253 Sechium edule HOM05D002924 ORTHO05D003122 5.2e-08 61.6 125 40.0
Actinidia39583 Actinidia chinensis HOM05D002924 ORTHO05D003122 6.8e-08 61.2 122 41.8
GSVIVG01021519001 Vitis vinifera HOM05D002924 ORTHO05D003122 6.8e-08 61.2 123 39.0
ClCG03G006750 Citrullus lanatus HOM05D002924 ORTHO05D003122 8.9e-08 60.8 136 39.7
Lalb_Chr18g0055361 Lupinus albus HOM05D002924 ORTHO05D003122 8.9e-08 60.8 129 38.8
Nitab4.5_0001531g0020 Nicotiana tabacum HOM05D002924 ORTHO05D003122 8.9e-08 60.8 120 41.7
Nitab4.5_0009991g0010 Nicotiana tabacum HOM05D002924 ORTHO05D003122 8.9e-08 60.8 122 41.0
Peaxi162Scf00317g00117 Petunia axillaris HOM05D002924 ORTHO05D003122 8.9e-08 60.8 125 40.8
PGSC0003DMG400001174 Solanum tuberosum HOM05D002924 ORTHO05D003122 8.9e-08 60.8 120 40.0
FvH4_3g05370 Fragaria vesca HOM05D002924 ORTHO05D003122 1.2e-07 60.5 131 41.2
TAR626G0560 Trochodendron aralioides HOM05D002924 ORTHO05D003122 1.2e-07 60.5 138 38.4
CAN.G50.1 Capsicum annuum HOM05D002924 ORTHO05D003122 1.5e-07 60.1 116 40.5
Cpa.g.sc17.12 Carica papaya HOM05D002924 ORTHO05D003122 1.5e-07 60.1 117 41.9
MELO3C001202.2 Cucumis melo HOM05D002924 ORTHO05D003122 1.5e-07 60.1 96 44.8
Glyma.08G096500 Glycine max HOM05D002924 ORTHO05D003122 1.5e-07 60.1 137 36.5
MD10G1260700 Malus domestica HOM05D002924 ORTHO05D003122 1.5e-07 60.1 126 37.3
Actinidia07706 Actinidia chinensis HOM05D002924 ORTHO05D003122 2.0e-07 59.7 119 42.9
MSTRG.7496 Avicennia marina HOM05D002924 ORTHO05D003122 2.0e-07 59.7 119 42.0
BcaC01g00158 Brassica carinata HOM05D002924 ORTHO05D003122 2.0e-07 59.7 121 40.5
A08p24680 Brassica napus HOM05D002924 ORTHO05D003122 2.0e-07 59.7 121 40.5
BolC3t19897H Brassica oleracea HOM05D002924 ORTHO05D003122 2.0e-07 59.7 121 40.5
BraA08t34423Z Brassica rapa HOM05D002924 ORTHO05D003122 2.0e-07 59.7 121 40.5
Solyc08g036620.4 Solanum lycopersicum HOM05D002924 ORTHO05D003122 2.0e-07 59.7 115 38.3
HPP92_011075 Vanilla planifolia HOM05D002924 ORTHO05D003122 2.0e-07 59.7 83 44.6
C03p76420 Brassica napus HOM05D002924 ORTHO05D003122 2.6e-07 59.3 121 41.3
FAN21G1101 Fragaria x ananassa HOM05D002924 ORTHO05D003122 2.6e-07 59.3 132 40.9
MD05G1282100 Malus domestica HOM05D002924 ORTHO05D003122 2.6e-07 59.3 125 38.4
QL05p057398 Quercus lobata HOM05D002924 ORTHO05D003122 2.6e-07 59.3 136 39.7
Sabra11G0066500 Salix brachista HOM05D002924 ORTHO05D003122 2.6e-07 59.3 130 37.7
Solyc08g036660.4 Solanum lycopersicum HOM05D002924 ORTHO05D003122 2.6e-07 59.3 143 35.7
FAN16G0603 Fragaria x ananassa HOM05D002924 ORTHO05D003122 3.4e-07 58.9 132 41.7
Peaxi162Scf00394g00120 Petunia axillaris HOM05D002924 ORTHO05D003122 3.4e-07 58.9 126 36.5
Sed0008794 Sechium edule HOM05D002924 ORTHO05D003122 3.4e-07 58.9 125 40.0
vmacro03333 Vaccinium macrocarpon HOM05D002924 ORTHO05D003122 3.4e-07 58.9 121 38.0
AL1G44040 Arabidopsis lyrata HOM05D002924 ORTHO05D003122 4.4e-07 58.5 122 40.2
FAN21G3281 Fragaria x ananassa HOM05D002924 ORTHO05D003122 4.4e-07 58.5 132 40.2
HanXRQChr04g0114381 Helianthus annuus HOM05D002924 ORTHO05D003122 4.4e-07 58.5 129 40.3
unitig_26.g9758 Utricularia gibba HOM05D002924 ORTHO05D003122 4.4e-07 58.5 121 41.3
Actinidia18522 Actinidia chinensis HOM05D002924 ORTHO05D003122 5.8e-07 58.2 130 38.5
Psat7g082920 Pisum sativum HOM05D002924 ORTHO05D003122 5.8e-07 58.2 123 41.5
AT1G30135 Arabidopsis thaliana HOM05D002924 ORTHO05D003122 7.6e-07 57.8 122 38.5
Manes.17G071600 Manihot esculenta HOM05D002924 ORTHO05D003122 7.6e-07 57.8 140 35.7
Hund21543 Selenicereus undatus HOM05D002924 ORTHO05D003122 7.6e-07 57.8 83 38.6
BcaB03g12198 Brassica carinata HOM05D002924 ORTHO05D003122 1.3e-06 57.0 122 36.9
BcaC01g00164 Brassica carinata HOM05D002924 ORTHO05D003122 1.3e-06 57.0 122 41.0
Eucgr.D00289 Eucalyptus grandis HOM05D002924 ORTHO05D003122 1.3e-06 57.0 129 37.2
FAN25G1226 Fragaria x ananassa HOM05D002924 ORTHO05D003122 1.3e-06 57.0 132 41.7
BcaB07g32615 Brassica carinata HOM05D002924 ORTHO05D003122 1.7e-06 56.6 124 38.7
FAN11G1040 Fragaria x ananassa HOM05D002924 ORTHO05D003122 1.7e-06 56.6 132 40.9
FAN16G2964 Fragaria x ananassa HOM05D002924 ORTHO05D003122 1.7e-06 56.6 133 39.8
Sopen08g011370 Solanum pennellii HOM05D002924 ORTHO05D003122 1.7e-06 56.6 115 38.3
Sopen08g011170 Solanum pennellii HOM05D002924 ORTHO05D003122 2.2e-06 56.2 116 37.1
Sopen08g011410 Solanum pennellii HOM05D002924 ORTHO05D003122 2.2e-06 56.2 110 39.1
AL270U10010 Arabidopsis lyrata HOM05D002924 ORTHO05D003122 2.9e-06 55.8 123 40.7
MSTRG.16253 Avicennia marina HOM05D002924 ORTHO05D003122 2.9e-06 55.8 131 36.6
AL4G30580 Arabidopsis lyrata HOM05D002924 ORTHO05D003122 3.8e-06 55.5 123 39.8
BcaB06g28785 Brassica carinata HOM05D002924 ORTHO05D003122 3.8e-06 55.5 119 38.7
C05p28990 Brassica napus HOM05D002924 ORTHO05D003122 3.8e-06 55.5 128 38.3
Prupe.3G188200 Prunus persica HOM05D002924 ORTHO05D003122 3.8e-06 55.5 85 48.2
PGR031G1937 Punica granatum HOM05D002924 ORTHO05D003122 3.8e-06 55.5 101 39.6
GSVIVG01021518001 Vitis vinifera HOM05D002924 ORTHO05D003122 3.8e-06 55.5 82 46.3
BraA09t39160Z Brassica rapa HOM05D002924 ORTHO05D003122 4.9e-06 55.1 129 41.1
Sp1g26000 Schrenkiella parvula HOM05D002924 ORTHO05D003122 4.9e-06 55.1 126 39.7
PGSC0003DMG400001178 Solanum tuberosum HOM05D002924 ORTHO05D003122 4.9e-06 55.1 100 42.0
BcaC05g27039 Brassica carinata HOM05D002924 ORTHO05D003122 6.4e-06 54.7 126 37.3
BolC5t31621H Brassica oleracea HOM05D002924 ORTHO05D003122 6.4e-06 54.7 126 37.3
CiPaw.10G090800 Carya illinoinensis HOM05D002924 ORTHO05D003122 6.4e-06 54.7 138 38.4
Nitab4.5_0005246g0010 Nicotiana tabacum HOM05D002924 ORTHO05D003122 6.4e-06 54.7 129 35.7
arahy.Tifrunner.gnm1.ann1.A76KD4 Arachis hypogaea HOM05D002924 ORTHO05D003122 8.4e-06 54.3 100 38.0
arahy.Tifrunner.gnm1.ann1.P4WXL8 Arachis hypogaea HOM05D002924 ORTHO05D003122 8.4e-06 54.3 100 38.0
CSS0028188 Camellia sinensis var. sinensis HOM05D002924 ORTHO05D003122 8.4e-06 54.3 95 43.2
Solyc08g036505.2 Solanum lycopersicum HOM05D002924 ORTHO05D003122 8.4e-06 54.3 115 37.4


User provided reference genes

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