Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE12G0039 Ceratophyllum demersum HOM05D004294 ORTHO05D004899 3.1e-93 345.1 176 100.0
ATR0626G354 Amborella trichopoda HOM05D004294 ORTHO05D004899 1.5e-55 219.9 160 66.2
Eucgr.E01714 Eucalyptus grandis HOM05D004294 ORTHO05D004899 3.4e-55 218.8 158 69.6
TAR629G2021 Trochodendron aralioides HOM05D004294 ORTHO05D004899 7.5e-55 217.6 162 66.7
CiPaw.14G015600 Carya illinoinensis HOM05D004294 ORTHO05D004899 1.1e-53 213.8 158 67.7
TAR371G1121 Trochodendron aralioides HOM05D004294 ORTHO05D004899 1.1e-53 213.8 155 66.5
Cfa022163 Carpinus fangiana HOM05D004294 ORTHO05D004899 7.0e-53 211.1 158 67.1
Haze_02916 Corylus avellana HOM05D004294 ORTHO05D004899 9.2e-53 210.7 158 67.1
CANSAT35G1700 Cannabis sativa HOM05D004294 ORTHO05D004899 5.9e-52 208.0 163 66.3
Dinv43581 Davidia involucrata HOM05D004294 ORTHO05D004899 2.3e-51 206.1 158 64.6
PSO675G3209 Papaver somniferum HOM05D004294 ORTHO05D004899 3.0e-51 205.7 159 64.8
vmacro19009 Vaccinium macrocarpon HOM05D004294 ORTHO05D004899 3.0e-51 205.7 158 64.6
Rhsim08G0211800 Rhododendron simsii HOM05D004294 ORTHO05D004899 3.9e-51 205.3 158 64.6
Medtr2g022850 Medicago truncatula HOM05D004294 ORTHO05D004899 6.6e-51 204.5 163 65.6
PSO063G7341 Papaver somniferum HOM05D004294 ORTHO05D004899 8.6e-51 204.1 159 64.2
Actinidia15750 Actinidia chinensis HOM05D004294 ORTHO05D004899 1.1e-50 203.8 158 64.6
CiPaw.13G021200 Carya illinoinensis HOM05D004294 ORTHO05D004899 1.1e-50 203.8 158 65.8
Glyma.13G219700 Glycine max HOM05D004294 ORTHO05D004899 1.1e-50 203.8 158 67.7
Thecc.04G104900 Theobroma cacao HOM05D004294 ORTHO05D004899 1.1e-50 203.8 162 66.0
PSO782G1693 Papaver somniferum HOM05D004294 ORTHO05D004899 1.9e-50 203.0 159 64.2
Phvul.006G166400 Phaseolus vulgaris HOM05D004294 ORTHO05D004899 1.9e-50 203.0 157 65.6
Glyma.15G092700 Glycine max HOM05D004294 ORTHO05D004899 2.5e-50 202.6 157 67.5
PSO541G2071 Papaver somniferum HOM05D004294 ORTHO05D004899 2.5e-50 202.6 158 64.6
TWI75G0011 Tripterygium wilfordii HOM05D004294 ORTHO05D004899 3.3e-50 202.2 158 64.6
SGA_v2.0_scaffold45G17247 Striga asiatica HOM05D004294 ORTHO05D004899 4.3e-50 201.8 158 65.8
VMungo0540G0738 Vigna mungo HOM05D004294 ORTHO05D004899 4.3e-50 201.8 157 65.6
QL04p025854 Quercus lobata HOM05D004294 ORTHO05D004899 9.5e-50 200.7 158 64.6
Lj3g0025421 Lotus japonicus HOM05D004294 ORTHO05D004899 1.6e-49 199.9 158 63.3
MD07G1088000 Malus domestica HOM05D004294 ORTHO05D004899 2.8e-49 199.1 162 63.6
Lalb_Chr14g0374351 Lupinus albus HOM05D004294 ORTHO05D004899 3.6e-49 198.7 158 65.2
Medtr2g084540 Medicago truncatula HOM05D004294 ORTHO05D004899 4.7e-49 198.4 159 65.4
TPR.G32380 Trifolium pratense HOM05D004294 ORTHO05D004899 4.7e-49 198.4 159 65.4
CSS0014990 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 8.0e-49 197.6 159 64.2
Hma1.2p1_1440F.1_g283530 Hydrangea macrophylla HOM05D004294 ORTHO05D004899 8.0e-49 197.6 157 61.8
Psat2g182760 Pisum sativum HOM05D004294 ORTHO05D004899 1.1e-48 197.2 159 65.4
GSVIVG01037228001 Vitis vinifera HOM05D004294 ORTHO05D004899 1.4e-48 196.8 157 62.4
MD02G1225800 Malus domestica HOM05D004294 ORTHO05D004899 1.8e-48 196.4 162 62.3
Cc02_g25750 Coffea canephora HOM05D004294 ORTHO05D004899 2.3e-48 196.1 157 63.1
Ca_01696_v3 Cicer arietinum L. HOM05D004294 ORTHO05D004899 3.1e-48 195.7 158 64.6
Hma1.2p1_0973F.1_g243000 Hydrangea macrophylla HOM05D004294 ORTHO05D004899 3.1e-48 195.7 157 61.1
Sed0004229 Sechium edule HOM05D004294 ORTHO05D004899 3.1e-48 195.7 172 58.7
Prupe.2G114700 Prunus persica HOM05D004294 ORTHO05D004899 6.8e-48 194.5 155 63.2
FvH4_5g29260 Fragaria vesca HOM05D004294 ORTHO05D004899 1.2e-47 193.7 158 61.4
Ah.09g230610 Amaranthus hybridus HOM05D004294 ORTHO05D004899 1.5e-47 193.4 159 60.4
Potri.002G134800 Populus trichocarpa HOM05D004294 ORTHO05D004899 2.0e-47 193.0 159 62.3
AUR62021407 Chenopodium quinoa HOM05D004294 ORTHO05D004899 3.4e-47 192.2 157 61.1
AUR62021410 Chenopodium quinoa HOM05D004294 ORTHO05D004899 3.4e-47 192.2 157 61.1
FvH4_7g08700 Fragaria vesca HOM05D004294 ORTHO05D004899 3.4e-47 192.2 158 61.4
FAN06G3965 Fragaria x ananassa HOM05D004294 ORTHO05D004899 3.4e-47 192.2 158 61.4
FAN18G1057 Fragaria x ananassa HOM05D004294 ORTHO05D004899 3.4e-47 192.2 158 60.8
RcHm_v2.0_Chr1g0343921 Rosa chinensis HOM05D004294 ORTHO05D004899 5.8e-47 191.4 161 60.9
Sabra02G0105000 Salix brachista HOM05D004294 ORTHO05D004899 5.8e-47 191.4 159 62.9
Lj3g0019907 Lotus japonicus HOM05D004294 ORTHO05D004899 7.5e-47 191.0 160 61.2
FAN03G1356 Fragaria x ananassa HOM05D004294 ORTHO05D004899 9.8e-47 190.7 158 60.8
GSVIVG01026772001 Vitis vinifera HOM05D004294 ORTHO05D004899 9.8e-47 190.7 157 62.4
CAN.G756.9 Capsicum annuum HOM05D004294 ORTHO05D004899 1.3e-46 190.3 158 61.4
Nitab4.5_0004088g0110 Nicotiana tabacum HOM05D004294 ORTHO05D004899 1.3e-46 190.3 158 60.8
Sed0018514 Sechium edule HOM05D004294 ORTHO05D004899 1.3e-46 190.3 156 60.3
Atru.chr5.64 Acer truncatum HOM05D004294 ORTHO05D004899 3.7e-46 188.7 157 64.3
Peaxi162Scf00102g01053 Petunia axillaris HOM05D004294 ORTHO05D004899 3.7e-46 188.7 159 59.1
RcHm_v2.0_Chr5g0055501 Rosa chinensis HOM05D004294 ORTHO05D004899 3.7e-46 188.7 163 61.3
Atru.chr5.34 Acer truncatum HOM05D004294 ORTHO05D004899 4.9e-46 188.3 157 63.7
Gohir.A08G156800 Gossypium hirsutum HOM05D004294 ORTHO05D004899 6.4e-46 188.0 161 62.1
Sopen01g035370 Solanum pennellii HOM05D004294 ORTHO05D004899 8.3e-46 187.6 158 60.1
Cpa.g.sc52.62 Carica papaya HOM05D004294 ORTHO05D004899 1.1e-45 187.2 158 60.1
AUR62010895 Chenopodium quinoa HOM05D004294 ORTHO05D004899 1.1e-45 187.2 156 60.3
Manes.02G122400 Manihot esculenta HOM05D004294 ORTHO05D004899 1.1e-45 187.2 158 61.4
SalBow5G4501 Salvia bowleyana HOM05D004294 ORTHO05D004899 1.1e-45 187.2 159 60.4
ClCG05G002810 Citrullus lanatus HOM05D004294 ORTHO05D004899 1.4e-45 186.8 156 60.3
Gohir.D08G177200 Gossypium hirsutum HOM05D004294 ORTHO05D004899 1.4e-45 186.8 161 62.1
Gorai.004G185600 Gossypium raimondii HOM05D004294 ORTHO05D004899 1.9e-45 186.4 161 61.5
Solyc01g150146.1 Solanum lycopersicum HOM05D004294 ORTHO05D004899 2.4e-45 186.0 158 59.5
HPP92_020692 Vanilla planifolia HOM05D004294 ORTHO05D004899 2.4e-45 186.0 157 62.4
CsaV3_3G010340 Cucumis sativus L. HOM05D004294 ORTHO05D004899 4.1e-45 185.3 156 61.5
PGSC0003DMG400001711 Solanum tuberosum HOM05D004294 ORTHO05D004899 4.1e-45 185.3 158 59.5
MSTRG.20657 Avicennia marina HOM05D004294 ORTHO05D004899 5.4e-45 184.9 157 58.0
HanXRQChr17g0545891 Helianthus annuus HOM05D004294 ORTHO05D004899 5.4e-45 184.9 158 58.9
AL4G36820 Arabidopsis lyrata HOM05D004294 ORTHO05D004899 7.0e-45 184.5 160 61.9
Carub.0004s2151 Capsella rubella HOM05D004294 ORTHO05D004899 9.2e-45 184.1 160 61.9
CARHR134310 Cardamine hirsuta HOM05D004294 ORTHO05D004899 9.2e-45 184.1 164 59.1
Thhalv10017327m.g Eutrema salsugineum HOM05D004294 ORTHO05D004899 1.2e-44 183.7 160 61.9
Nitab4.5_0006873g0030 Nicotiana tabacum HOM05D004294 ORTHO05D004899 1.2e-44 183.7 160 58.8
AT2G39445 Arabidopsis thaliana HOM05D004294 ORTHO05D004899 1.6e-44 183.3 160 61.2
arahy.Tifrunner.gnm1.ann1.ZAL8K4 Arachis hypogaea HOM05D004294 ORTHO05D004899 2.0e-44 183.0 158 62.7
unitig_0.g1581 Utricularia gibba HOM05D002708 ORTHO05D003516 2.0e-44 183.0 163 57.1
ECA234G1071 Erigeron canadensis HOM05D004294 ORTHO05D004899 4.6e-44 181.8 158 57.6
ECA234G1894 Erigeron canadensis HOM05D004294 ORTHO05D004899 7.8e-44 181.0 158 57.6
Aa31LG5G20440 Aethionema arabicum HOM05D004294 ORTHO05D004899 1.7e-43 179.9 160 61.9
BcaB02g09119 Brassica carinata HOM05D004294 ORTHO05D004899 6.6e-43 177.9 161 59.0
Sp4g08170 Schrenkiella parvula HOM05D004294 ORTHO05D004899 1.1e-42 177.2 160 60.0
BcaC02g12072 Brassica carinata HOM05D004294 ORTHO05D004899 1.5e-42 176.8 167 56.3
BolC4t22431H Brassica oleracea HOM05D004294 ORTHO05D004899 1.5e-42 176.8 167 56.3
Carub.0004s0710 Capsella rubella HOM05D004294 ORTHO05D004899 1.5e-42 176.8 162 59.9
A05p06950 Brassica napus HOM05D004294 ORTHO05D004899 1.9e-42 176.4 161 58.4
C04p08280 Brassica napus HOM05D004294 ORTHO05D004899 1.9e-42 176.4 167 56.3
Migut.K00778 Erythranthe guttata HOM05D004294 ORTHO05D004899 1.9e-42 176.4 160 58.1
BraA05t19659Z Brassica rapa HOM05D004294 ORTHO05D004899 2.5e-42 176.0 161 58.4
HanXRQChr10g0302581 Helianthus annuus HOM05D004294 ORTHO05D004899 3.3e-42 175.6 163 56.4
Nn6g34994 Nelumbo nucifera HOM05D004294 ORTHO05D004899 3.3e-42 175.6 121 69.4
arahy.Tifrunner.gnm1.ann1.E5WW1G Arachis hypogaea HOM05D005360 ORTHO05D004899 5.6e-42 174.9 156 60.9
MELO3C031598.2 Cucumis melo HOM05D004294 ORTHO05D004899 1.2e-41 173.7 161 57.8
DCAR_029527 Daucus carota HOM05D004294 ORTHO05D004899 3.6e-41 172.2 158 55.7
Sp4g21750 Schrenkiella parvula HOM05D004294 ORTHO05D004899 6.2e-41 171.4 160 58.8
Lsat_1_v5_gn_4_36140 Lactuca sativa HOM05D004294 ORTHO05D004899 8.1e-41 171.0 158 55.7
Aa31LG5G20160 Aethionema arabicum HOM05D004294 ORTHO05D004899 1.1e-40 170.6 160 59.4
Zm00001eb097750 Zea mays HOM05D004294 ORTHO05D004899 2.9e-38 162.5 155 53.5
Gohir.D08G177066 Gossypium hirsutum HOM05D004294 ORTHO05D004899 3.2e-37 159.1 157 56.1
C04p67330 Brassica napus HOM05D004294 ORTHO05D004899 1.6e-36 156.8 168 53.0
BolC4t28228H Brassica oleracea HOM05D004294 ORTHO05D004899 1.6e-36 156.8 168 53.0
Duzib138G0823 Durio zibethinus HOM05D004294 ORTHO05D004899 1.6e-36 156.8 126 64.3
Potri.014G043400 Populus trichocarpa HOM05D004294 ORTHO05D004899 2.7e-36 156.0 134 56.7
BcaB06g29086 Brassica carinata HOM05D004294 ORTHO05D004899 4.6e-36 155.2 160 53.1
Hund09105 Selenicereus undatus HOM05D004294 ORTHO05D004899 1.0e-35 154.1 119 62.2
Gorai.004G185000 Gossypium raimondii HOM05D004294 ORTHO05D004899 2.3e-35 152.9 161 55.3
BraA04t18462Z Brassica rapa HOM05D004294 ORTHO05D004899 3.0e-35 152.5 165 53.9
Pp3c4_15230 Physcomitrium patens HOM05D004294 ORTHO05D004899 3.0e-35 152.5 162 48.1
AagrBONN_evm.TU.Sc2ySwM_362.275 Anthoceros agrestis HOM05D004294 ORTHO05D004899 6.6e-35 151.4 162 49.4
AL2G15030 Arabidopsis lyrata HOM05D004294 ORTHO05D004899 1.5e-34 150.2 161 52.2
AagrBONN_evm.TU.Sc2ySwM_368.1700 Anthoceros agrestis HOM05D004294 ORTHO05D004899 2.5e-34 149.4 164 48.8
AT1G61280 Arabidopsis thaliana HOM05D004294 ORTHO05D004899 2.8e-33 146.0 125 59.2
Aqoxy3G02531 Aquilegia oxysepala HOM05D004294 ORTHO05D004899 2.4e-32 142.9 95 67.4
A04p30460 Brassica napus HOM05D004294 ORTHO05D004899 4.0e-32 142.1 134 55.2
MELO3C031600.2 Cucumis melo HOM05D004294 ORTHO05D004899 4.0e-32 142.1 140 57.1
Ciclev10022425m.g Citrus clementina HOM05D004294 ORTHO05D004899 3.4e-31 139.0 121 62.8
CARHR051330 Cardamine hirsuta HOM05D004294 ORTHO05D004899 8.4e-30 134.4 119 59.7
BcaB02g09120 Brassica carinata HOM05D004294 ORTHO05D004899 1.4e-29 133.7 111 59.5
EL10Ac8g18381 Beta vulgaris HOM05D004294 ORTHO05D004899 2.7e-28 129.4 163 48.5
Thhalv10024054m.g Eutrema salsugineum HOM05D004294 ORTHO05D004899 3.5e-28 129.0 100 61.0
SalBow4G1179 Salvia bowleyana HOM05D004294 ORTHO05D004899 1.0e-27 127.5 147 44.2
Carub.0002s0388 Capsella rubella HOM05D004294 ORTHO05D004899 2.3e-27 126.3 124 55.6
CSS0001349 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 6.6e-27 124.8 165 47.3
SMO232G0013 Selaginella moellendorffii HOM05D004294 ORTHO05D004899 1.1e-26 124.0 121 45.5
CSS0013781 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 4.3e-26 122.1 165 46.7
BcaC02g07404 Brassica carinata HOM05D004294 ORTHO05D004899 9.6e-26 120.9 172 44.2
Migut.N01709 Erythranthe guttata HOM05D004294 ORTHO05D004899 1.2e-25 120.6 150 49.3
CSS0040335 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 2.1e-25 119.8 158 50.0
CBR_g12382 Chara braunii HOM05D004294 ORTHO05D004899 4.7e-25 118.6 135 45.9
Mapoly0030s0033 Marchantia polymorpha HOM05D004294 ORTHO05D004899 1.1e-24 117.5 121 47.9
unitig_0.g1328 Utricularia gibba HOM05D004294 ORTHO05D004899 7.6e-23 111.3 163 43.6
MELO3C031599.2 Cucumis melo HOM05D004294 ORTHO05D004899 6.4e-22 108.2 87 62.1
TPR.G23032 Trifolium pratense HOM05D004294 ORTHO05D004899 1.3e-19 100.5 66 66.7
MSTRG.4966 Avicennia marina HOM05D004294 ORTHO05D004899 8.7e-19 97.8 142 43.0
COL.COLO4_08476 Corchorus olitorius HOM05D004294 ORTHO05D004899 1.5e-18 97.1 76 63.2
Os10g0569100 Oryza sativa ssp. japonica HOM05D004294 ORTHO05D004899 2.4e-16 89.7 76 51.3
SEGI_31162 Sequoiadendron giganteum HOM05D004294 ORTHO05D004899 3.1e-16 89.4 69 56.5
Zm00001eb212340 Zea mays HOM05D004294 ORTHO05D004899 1.4e-13 80.5 79 55.7
Lsat_1_v5_gn_3_35920 Lactuca sativa HOM05D004294 ORTHO05D004899 2.4e-13 79.7 63 52.4
Os03g0640300 Oryza sativa ssp. japonica HOM05D004294 ORTHO05D004899 1.3e-11 73.9 80 53.8
PGSC0003DMG400001683 Solanum tuberosum HOM05D004294 ORTHO05D004899 8.7e-11 71.2 158 36.1
SMO241G0031 Selaginella moellendorffii HOM05D004294 ORTHO05D004899 1.1e-10 70.9 63 50.8
TPR.G20146 Trifolium pratense HOM05D004294 ORTHO05D004899 1.1e-10 70.9 62 67.7
Cfa018117 Carpinus fangiana HOM05D004294 ORTHO05D004899 2.5e-10 69.7 53 69.8
Actinidia18927 Actinidia chinensis HOM05D004294 ORTHO05D004899 7.4e-10 68.2 57 64.9
PGSC0003DMG400034273 Solanum tuberosum HOM05D004294 ORTHO05D004899 2.8e-09 66.2 57 64.9
Cre01.g055424 Chlamydomonas reinhardtii HOM05D004294 ORTHO05D004899 3.7e-09 65.9 93 38.7
PGSC0003DMG400001681 Solanum tuberosum HOM05D004294 ORTHO05D004899 6.2e-09 65.1 61 62.3
Cfa001861 Carpinus fangiana HOM05D004294 ORTHO05D004899 1.4e-08 63.9 52 67.3
Cfa018800 Carpinus fangiana HOM05D004294 ORTHO05D004899 1.4e-08 63.9 52 67.3
Cfa019943 Carpinus fangiana HOM05D004294 ORTHO05D004899 1.8e-08 63.5 56 62.5
ECA234G1984 Erigeron canadensis HOM05D004294 ORTHO05D004899 5.3e-08 62.0 59 55.9
HPP92_020794 Vanilla planifolia HOM05D000509 ORTHO05D006393 3.4e-07 59.3 60 61.7
MCO05G667 Micromonas commoda HOM05D004294 ORTHO05D004899 9.9e-07 57.8 108 34.3
Sabra14G0031400 Salix brachista HOM05D004294 ORTHO05D004899 1.3e-06 57.4 107 33.6
Cfa025555 Carpinus fangiana HOM05D004294 ORTHO05D124452 4.9e-06 55.5 84 33.3


User provided reference genes

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