Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE12G0038 Ceratophyllum demersum HOM05D004088 ORTHO05D004736 0.0e+00 1800.8 1002 100.0
CDE04G2970 Ceratophyllum demersum HOM05D004088 ORTHO05D004736 0.0e+00 1525.8 1077 77.6
CDE12G0354 Ceratophyllum demersum HOM05D004088 ORTHO05D129593 7.7e-229 798.1 432 95.6
CDE12G0814 Ceratophyllum demersum HOM05D004088 ORTHO05D004736 2.2e-114 417.9 333 73.0
Nn3g20183 Nelumbo nucifera HOM05D004088 ORTHO05D004736 3.3e-38 164.9 296 38.2
Ca_00845_v3 Cicer arietinum L. HOM05D004088 ORTHO05D004736 2.1e-37 162.2 282 36.2
MBI18_g11295_MAGBIO Magnolia biondii HOM05D004088 ORTHO05D004736 1.8e-36 159.1 308 38.3
Thecc.06G002600 Theobroma cacao HOM05D004088 ORTHO05D004736 4.0e-36 157.9 291 37.8
Glyma.09G024600 Glycine max HOM05D004088 ORTHO05D004736 6.9e-36 157.1 282 36.2
RcHm_v2.0_Chr5g0016081 Rosa chinensis HOM05D004088 ORTHO05D004736 1.2e-35 156.4 281 39.1
MD05G1272700 Malus domestica HOM05D004088 ORTHO05D004736 2.6e-35 155.2 348 33.3
Manes.14G123600 Manihot esculenta HOM05D004088 ORTHO05D004736 3.4e-35 154.8 293 38.6
PGSC0003DMG400021120 Solanum tuberosum HOM05D004088 ORTHO05D004736 3.4e-35 154.8 293 36.2
Prupe.4G090700 Prunus persica HOM05D004088 ORTHO05D004736 1.3e-34 152.9 285 37.9
FAN21G0524 Fragaria x ananassa HOM05D004088 ORTHO05D004736 3.8e-34 151.4 280 38.2
MD10G1252800 Malus domestica HOM05D004088 ORTHO05D004736 3.8e-34 151.4 291 37.1
Sopen02g019080 Solanum pennellii HOM05D004088 ORTHO05D004736 3.8e-34 151.4 293 35.8
Eucgr.E02503 Eucalyptus grandis HOM05D004088 ORTHO05D004736 4.9e-34 151.0 286 37.8
FvH4_3g10170 Fragaria vesca HOM05D004088 ORTHO05D004736 6.4e-34 150.6 279 36.6
Lalb_Chr18g0058001 Lupinus albus HOM05D004088 ORTHO05D004736 1.1e-33 149.8 389 29.8
Sabra11G0140800 Salix brachista HOM05D004088 ORTHO05D004736 3.2e-33 148.3 293 36.2
CiPaw.10G109300 Carya illinoinensis HOM05D004088 ORTHO05D004736 4.2e-33 147.9 300 37.3
Sopen02g006710 Solanum pennellii HOM05D004088 ORTHO05D004736 4.2e-33 147.9 289 34.6
Gohir.A10G004300 Gossypium hirsutum HOM05D004088 ORTHO05D004736 7.1e-33 147.1 291 37.5
Peaxi162Scf00395g00111 Petunia axillaris HOM05D004088 ORTHO05D004736 1.2e-32 146.4 292 33.9
Atru.chr10.842 Acer truncatum HOM05D004088 ORTHO05D004736 2.1e-32 145.6 197 46.2
Solyc02g069940.4 Solanum lycopersicum HOM05D004088 ORTHO05D004736 2.7e-32 145.2 293 35.8
Hma1.2p1_0067F.1_g036970 Hydrangea macrophylla HOM05D004088 ORTHO05D004736 3.5e-32 144.8 398 31.7
PSO541G5923 Papaver somniferum HOM05D004088 ORTHO05D004736 3.5e-32 144.8 291 36.1
Potri.011G164400 Populus trichocarpa HOM05D004088 ORTHO05D004736 3.5e-32 144.8 293 35.8
Dinv10790 Davidia involucrata HOM05D004088 ORTHO05D004736 6.0e-32 144.1 305 35.7
Phvul.006G128000 Phaseolus vulgaris HOM05D004088 ORTHO05D004736 6.0e-32 144.1 282 34.8
TPR.G26329 Trifolium pratense HOM05D004088 ORTHO05D004736 6.0e-32 144.1 284 33.5
Duzib235G1173 Durio zibethinus HOM05D004088 ORTHO05D004736 7.8e-32 143.7 291 37.1
Lj2C329T10 Lonicera japonica HOM05D004088 ORTHO05D004736 7.8e-32 143.7 290 34.8
Medtr2g030300 Medicago truncatula HOM05D004088 ORTHO05D004736 1.0e-31 143.3 388 31.2
Manes.06G068100 Manihot esculenta HOM05D004088 ORTHO05D004736 1.7e-31 142.5 158 51.3
COL.COLO4_26840 Corchorus olitorius HOM05D004088 ORTHO05D004736 2.3e-31 142.1 291 38.1
RcHm_v2.0_Chr5g0016211 Rosa chinensis HOM05D004088 ORTHO05D004736 3.9e-31 141.4 410 31.7
HPP92_017711 Vanilla planifolia HOM05D004088 ORTHO05D004736 5.1e-31 141.0 413 31.2
Lalb_Chr20g0120071 Lupinus albus HOM05D004088 ORTHO05D004736 1.1e-30 139.8 389 29.0
Psat1g167360 Pisum sativum HOM05D004088 ORTHO05D004736 1.5e-30 139.4 388 30.2
TWI18G0713 Tripterygium wilfordii HOM05D004088 ORTHO05D004736 1.5e-30 139.4 299 35.1
Sc24g0002610 Simmondsia chinensis HOM05D004088 ORTHO05D004736 4.3e-30 137.9 269 38.3
Duzib192G0456 Durio zibethinus HOM05D004088 ORTHO05D004736 5.6e-30 137.5 291 37.5
PGSC0003DMG400028032 Solanum tuberosum HOM05D004088 ORTHO05D004736 5.6e-30 137.5 352 32.1
TAR627G0836 Trochodendron aralioides HOM05D004088 ORTHO05D004736 9.6e-30 136.7 160 51.2
FAN25G3211 Fragaria x ananassa HOM05D004088 ORTHO05D004736 2.1e-29 135.6 266 36.1
Glyma.15G130600 Glycine max HOM05D004088 ORTHO05D004736 2.1e-29 135.6 163 46.6
FAN11G0925 Fragaria x ananassa HOM05D004088 ORTHO05D004736 2.8e-29 135.2 266 35.7
MBI02_g32065_MAGBIO Magnolia biondii HOM05D004088 ORTHO05D004736 2.8e-29 135.2 182 46.7
Sed0022133 Sechium edule HOM05D004088 ORTHO05D004736 3.6e-29 134.8 292 36.3
FAN16G0404 Fragaria x ananassa HOM05D004088 ORTHO05D004736 6.2e-29 134.0 304 33.2
Nitab4.5_0004734g0030 Nicotiana tabacum HOM05D004088 ORTHO05D004736 8.1e-29 133.7 284 34.2
CsaV3_6G052390 Cucumis sativus L. HOM05D004088 ORTHO05D004736 1.1e-28 133.3 343 33.8
Actinidia32361 Actinidia chinensis HOM05D004088 ORTHO05D004736 1.4e-28 132.9 284 36.3
CANSAT35G2036 Cannabis sativa HOM05D004088 ORTHO05D004736 1.8e-28 132.5 304 32.6
CSS0022324 Camellia sinensis var. sinensis HOM05D004088 ORTHO05D004736 2.4e-28 132.1 244 37.7
PSO675G0514 Papaver somniferum HOM05D004088 ORTHO05D004736 2.4e-28 132.1 157 47.8
Aqoxy1G01578 Aquilegia oxysepala HOM05D004088 ORTHO05D004736 1.5e-27 129.4 291 35.4
HanXRQChr14g0430221 Helianthus annuus HOM05D004088 ORTHO05D004736 2.0e-27 129.0 283 33.9
Lj6g0019238 Lotus japonicus HOM05D004088 ORTHO05D004736 2.6e-27 128.6 132 51.5
Actinidia33710 Actinidia chinensis HOM05D004088 ORTHO05D004736 3.4e-27 128.3 298 31.2
Sed0022554 Sechium edule HOM05D004088 ORTHO05D004736 4.5e-27 127.9 336 30.4
MELO3C007071.2 Cucumis melo HOM05D004088 ORTHO05D004736 7.6e-27 127.1 344 32.0
Haze_05860 Corylus avellana HOM05D004088 ORTHO05D004736 1.3e-26 126.3 215 39.5
Haze_05865 Corylus avellana HOM05D004088 ORTHO05D004736 1.3e-26 126.3 215 39.5
Dinv01743 Davidia involucrata HOM05D004088 ORTHO05D004736 2.2e-26 125.6 121 51.2
arahy.Tifrunner.gnm1.ann1.845J24 Arachis hypogaea HOM05D004088 ORTHO05D004736 4.9e-26 124.4 391 29.4
arahy.Tifrunner.gnm1.ann1.JZ5PNZ Arachis hypogaea HOM05D004088 ORTHO05D004736 6.4e-26 124.0 389 29.8
TWI75G0217 Tripterygium wilfordii HOM05D004088 ORTHO05D004736 1.1e-25 123.2 298 32.6
GSVIVG01021660001 Vitis vinifera HOM05D004088 ORTHO05D004736 1.1e-25 123.2 390 29.5
ATR0165G056 Amborella trichopoda HOM05D004088 ORTHO05D004736 2.4e-25 122.1 296 33.1
BcaB07g32689 Brassica carinata HOM05D004088 ORTHO05D004736 4.2e-25 121.3 280 35.4
BcaB07g32691 Brassica carinata HOM05D004088 ORTHO05D004736 4.2e-25 121.3 280 35.4
TAR629G1981 Trochodendron aralioides HOM05D004088 ORTHO05D004736 5.4e-25 120.9 294 33.3
ClCG01G025190 Citrullus lanatus HOM05D004088 ORTHO05D004736 9.3e-25 120.2 333 31.2
Prupe.6G009100 Prunus persica HOM05D004088 ORTHO05D004736 1.2e-24 119.8 238 36.6
DCAR_003851 Daucus carota HOM05D004088 ORTHO05D004736 2.1e-24 119.0 281 32.7
Aa31LG10G6600 Aethionema arabicum HOM05D004088 ORTHO05D004736 2.7e-24 118.6 292 33.9
BcaB07g32665 Brassica carinata HOM05D004088 ORTHO05D004736 4.6e-24 117.9 280 33.9
CAN.G79.31 Capsicum annuum HOM05D004088 ORTHO05D004736 1.0e-23 116.7 291 31.3
Solyc02g024000.4 Solanum lycopersicum HOM05D004088 ORTHO05D004736 1.8e-23 115.9 278 30.2
Cfa000808 Carpinus fangiana HOM05D004088 ORTHO05D004736 2.3e-23 115.5 417 28.8
Rhsim13G0121800 Rhododendron simsii HOM05D004088 ORTHO05D004736 2.3e-23 115.5 303 32.0
MSTRG.13273 Avicennia marina HOM05D004088 ORTHO05D004736 5.1e-23 114.4 196 37.8
Cc09_g07900 Coffea canephora HOM05D004088 ORTHO05D004736 1.1e-22 113.2 292 32.9
VMungo0540G1975 Vigna mungo HOM05D004088 ORTHO05D004736 1.5e-22 112.8 130 44.6
SGA_v2.0_scaffold106G30673 Striga asiatica HOM05D004088 ORTHO05D004736 1.9e-22 112.5 299 32.4
A09p35910 Brassica napus HOM05D004088 ORTHO05D004736 3.3e-22 111.7 382 29.8
SHI20695 Sapria himalayana HOM05D004088 ORTHO05D004736 3.3e-22 111.7 287 34.1
Os12g0612300 Oryza sativa ssp. japonica HOM05D004088 ORTHO05D004736 5.6e-22 110.9 314 30.3
Potri.001G466800 Populus trichocarpa HOM05D004088 ORTHO05D004736 5.6e-22 110.9 436 28.9
Sp4g17030 Schrenkiella parvula HOM05D004088 ORTHO05D004736 9.6e-22 110.2 134 45.5
Migut.H01326 Erythranthe guttata HOM05D004088 ORTHO05D004736 1.6e-21 109.4 217 38.2
Gohir.D10G004300 Gossypium hirsutum HOM05D004088 ORTHO05D004736 2.1e-21 109.0 291 32.3
Sabra16G0316600 Salix brachista HOM05D004088 ORTHO05D004736 3.7e-21 108.2 240 35.4
BolC3t14642H Brassica oleracea HOM05D004088 ORTHO05D004736 8.1e-21 107.1 280 35.4
Ciclev10014183m.g Citrus clementina HOM05D004088 ORTHO05D004736 8.1e-21 107.1 224 34.8
MBI10_g06724_MAGBIO Magnolia biondii HOM05D007562 ORTHO05D009721 8.1e-21 107.1 220 39.1
HPP92_026552 Vanilla planifolia HOM05D004088 ORTHO05D004736 1.4e-20 106.3 228 35.5
BcaC05g27074 Brassica carinata HOM05D004088 ORTHO05D004736 3.1e-20 105.1 284 33.1
BolC5t31686H Brassica oleracea HOM05D004088 ORTHO05D004736 3.1e-20 105.1 284 33.1
HPP92_017740 Vanilla planifolia HOM05D004088 ORTHO05D000818 3.1e-20 105.1 382 29.3
Sp1g26400 Schrenkiella parvula HOM05D004088 ORTHO05D004736 4.0e-20 104.8 280 31.1
CiPaw.09G141900 Carya illinoinensis HOM05D004088 ORTHO05D004736 1.5e-19 102.8 406 31.5
Oeu058484.1 Olea europaea HOM05D004088 ORTHO05D004736 1.5e-19 102.8 229 34.9
Aqoxy1G01241 Aquilegia oxysepala HOM05D007562 ORTHO05D009721 2.0e-19 102.4 129 48.1
C05p29550 Brassica napus HOM05D004088 ORTHO05D004736 2.6e-19 102.1 399 30.1
SGA_v2.0_scaffold51G18657 Striga asiatica HOM05D004088 ORTHO05D007693 1.3e-18 99.8 277 32.5
MSTRG.14799 Avicennia marina HOM05D004088 ORTHO05D004736 1.7e-18 99.4 290 31.0
EL10Ac8g19551 Beta vulgaris HOM05D004088 ORTHO05D004736 1.7e-18 99.4 281 30.2
unitig_61.g26083 Utricularia gibba HOM05D004088 ORTHO05D004736 3.8e-18 98.2 342 30.4
THA.LOC104814348 Tarenaya hassleriana HOM05D004088 ORTHO05D004736 4.9e-18 97.8 304 32.2
CDE06G1544 Ceratophyllum demersum HOM05D004088 ORTHO05D004736 1.1e-17 96.7 371 27.5
AUR62027558 Chenopodium quinoa HOM05D004088 ORTHO05D004736 1.1e-17 96.7 372 28.5
CDE03G0099 Ceratophyllum demersum HOM05D004088 ORTHO05D004736 2.5e-17 95.5 417 27.3
BraA09t39116Z Brassica rapa HOM05D004088 ORTHO05D004736 7.1e-17 94.0 411 28.0
TAR629G1307 Trochodendron aralioides HOM05D007562 ORTHO05D009721 1.2e-16 93.2 160 37.5
Atru.chr12.749 Acer truncatum HOM05D007562 ORTHO05D009721 3.5e-16 91.7 97 46.4
Prupe.6G066700 Prunus persica HOM05D004088 ORTHO05D004736 3.5e-16 91.7 392 27.6
vmacro03381 Vaccinium macrocarpon HOM05D004088 ORTHO05D004736 4.6e-16 91.3 176 34.1
SEGI_22037 Sequoiadendron giganteum HOM05D004088 ORTHO05D004736 6.0e-16 90.9 192 34.4
Gorai.011G004700 Gossypium raimondii HOM05D004088 ORTHO05D004736 1.0e-15 90.1 291 29.6
MBI02_g16954_MAGBIO Magnolia biondii HOM05D004088 ORTHO05D004736 1.0e-15 90.1 390 27.9
Os09g0133800 Oryza sativa ssp. japonica HOM05D004088 ORTHO05D004736 1.0e-15 90.1 365 25.2
Zm00001eb420620 Zea mays HOM05D004088 ORTHO05D004736 1.3e-15 89.7 341 26.7
Carub.0001s2877 Capsella rubella HOM05D004088 ORTHO05D004736 1.8e-15 89.4 352 28.1
Sc20g0001880 Simmondsia chinensis HOM05D007562 ORTHO05D009721 1.5e-14 86.3 178 36.5
Zm00001eb136010 Zea mays HOM05D004088 ORTHO05D004736 1.9e-14 85.9 348 29.6
Aa31LG6G11780 Aethionema arabicum HOM05D004088 ORTHO05D004736 4.3e-14 84.7 417 25.7
MBI02_g32067_MAGBIO Magnolia biondii HOM05D004088 ORTHO05D004736 7.4e-14 84.0 293 30.4
Dinv11774 Davidia involucrata HOM05D007562 ORTHO05D009721 1.3e-13 83.2 104 42.3
Os04g0521600 Oryza sativa ssp. japonica HOM05D007562 ORTHO05D004736 1.3e-13 83.2 186 35.5
FvH4_7g19620 Fragaria vesca HOM05D007562 ORTHO05D009721 1.6e-13 82.8 99 44.4
FAN01G2123 Fragaria x ananassa HOM05D007562 ORTHO05D009721 1.6e-13 82.8 99 45.5
Prupe.2G214000 Prunus persica HOM05D007562 ORTHO05D009721 3.7e-13 81.6 145 36.6
RcHm_v2.0_Chr1g0363431 Rosa chinensis HOM05D007562 ORTHO05D009721 3.7e-13 81.6 99 44.4
FAN03G1079 Fragaria x ananassa HOM05D007562 ORTHO05D009721 8.2e-13 80.5 99 44.4
Nitab4.5_0001225g0110 Nicotiana tabacum HOM05D004088 ORTHO05D004736 8.2e-13 80.5 236 31.4
Os03g0784500 Oryza sativa ssp. japonica HOM05D004088 ORTHO05D004736 1.4e-12 79.7 275 29.1
PSO339G1903 Papaver somniferum HOM05D007562 ORTHO05D009721 1.4e-12 79.7 93 47.3
Carub.0004s1642 Capsella rubella HOM05D004088 ORTHO05D004736 1.8e-12 79.3 409 26.9
Zm00001eb299950 Zea mays HOM05D004088 ORTHO05D004736 1.8e-12 79.3 330 27.0
PSO063G7346 Papaver somniferum HOM05D007562 ORTHO05D009721 2.4e-12 79.0 195 35.4
Rhsim09G0152200 Rhododendron simsii HOM05D007562 ORTHO05D009721 3.1e-12 78.6 379 26.4
Zm00001eb261820 Zea mays HOM05D004088 ORTHO05D004736 3.1e-12 78.6 339 25.1
Eucgr.E02499 Eucalyptus grandis HOM05D004088 ORTHO05D004736 4.0e-12 78.2 265 26.4
Ah.14g086140 Amaranthus hybridus HOM05D002312 ORTHO05D006455 5.3e-12 77.8 385 25.7
PGR142G4136 Punica granatum HOM05D007562 ORTHO05D009721 1.2e-11 76.6 111 38.7
Atru.chr12.774 Acer truncatum HOM05D007562 ORTHO05D009721 2.6e-11 75.5 319 27.6
Glyma.16G154800 Glycine max HOM05D007562 ORTHO05D009721 2.6e-11 75.5 65 58.5
QL08p056015 Quercus lobata HOM05D007562 ORTHO05D009721 2.6e-11 75.5 127 34.6
QL05p062418 Quercus lobata HOM05D004088 ORTHO05D004736 3.4e-11 75.1 335 24.8
Zm00001eb059840 Zea mays HOM05D004088 ORTHO05D004736 3.4e-11 75.1 231 29.0
Manes.07G100522 Manihot esculenta HOM05D007562 ORTHO05D004736 5.8e-11 74.3 93 43.0
Potri.010G222200 Populus trichocarpa HOM05D007562 ORTHO05D009721 1.3e-10 73.2 111 36.0
Cfa021509 Carpinus fangiana HOM05D007562 ORTHO05D009721 1.7e-10 72.8 129 36.4
Os07g0147800 Oryza sativa ssp. japonica HOM05D004088 ORTHO05D004736 2.2e-10 72.4 342 24.9
SMO351G0272 Selaginella moellendorffii HOM05D004088 ORTHO05D004736 3.8e-10 71.6 162 30.9
MD07G1174900 Malus domestica HOM05D007562 ORTHO05D009721 6.5e-10 70.9 98 37.8
Thecc.10G073300 Theobroma cacao HOM05D007562 ORTHO05D009721 8.4e-10 70.5 268 28.4
Gohir.D06G174900 Gossypium hirsutum HOM05D007562 ORTHO05D009721 1.1e-09 70.1 112 39.3
Gorai.010G205300 Gossypium raimondii HOM05D007562 ORTHO05D009721 1.1e-09 70.1 112 39.3
Lj2g0025537 Lotus japonicus HOM05D007562 ORTHO05D009721 3.2e-09 68.6 74 50.0
Phvul.004G082400 Phaseolus vulgaris HOM05D007562 ORTHO05D009721 3.2e-09 68.6 66 50.0
Gohir.A06G167500 Gossypium hirsutum HOM05D007562 ORTHO05D009721 5.5e-09 67.8 64 48.4
Pp3c15_60 Physcomitrium patens HOM05D004088 ORTHO05D004736 7.1e-09 67.4 189 27.0
AUR62035797 Chenopodium quinoa HOM05D004088 ORTHO05D004736 9.3e-09 67.0 319 27.0
Duzib114G0316 Durio zibethinus HOM05D007562 ORTHO05D009721 9.3e-09 67.0 151 31.1
Ciclev10034000m.g Citrus clementina HOM05D007562 ORTHO05D004736 1.6e-08 66.2 89 41.6
SEGI_23472 Sequoiadendron giganteum HOM05D004088 ORTHO05D004736 2.1e-08 65.9 170 30.0
arahy.Tifrunner.gnm1.ann1.264L58 Arachis hypogaea HOM05D007562 ORTHO05D009721 2.7e-08 65.5 106 34.9
Ciclev10033298m.g Citrus clementina HOM05D007562 ORTHO05D009721 3.5e-08 65.1 146 30.1
AagrBONN_evm.TU.Sc2ySwM_117.446 Anthoceros agrestis HOM05D004088 ORTHO05D004736 4.6e-08 64.7 61 49.2
FAN10G0414 Fragaria x ananassa HOM05D007562 ORTHO05D009721 4.6e-08 64.7 105 39.0
RcHm_v2.0_Chr5g0016261 Rosa chinensis HOM05D004088 ORTHO05D004736 6.0e-08 64.3 99 36.4
TPR.G20136 Trifolium pratense HOM05D007562 ORTHO05D009721 3.9e-07 61.6 71 46.5
Cpa.g.sc1123.1 Carica papaya HOM05D004088 ORTHO05D004736 5.1e-07 61.2 62 48.4
CiPaw.01G273100 Carya illinoinensis HOM05D007562 ORTHO05D009721 1.9e-06 59.3 369 26.6
Hund03678 Selenicereus undatus HOM05D004088 ORTHO05D010054 1.9e-06 59.3 36 75.0
Haze_16895 Corylus avellana HOM05D007562 ORTHO05D009721 3.3e-06 58.5 321 25.9
Mapoly0009s0092 Marchantia polymorpha HOM05D004088 ORTHO05D004736 4.3e-06 58.2 221 24.4
Sed0017940 Sechium edule HOM05D007562 ORTHO05D009721 4.3e-06 58.2 97 35.1
VMungo0464G0183 Vigna mungo HOM05D007562 ORTHO05D009721 5.7e-06 57.8 52 51.9
TAR627G0400 Trochodendron aralioides HOM05D004088 ORTHO05D004736 9.7e-06 57.0 159 28.9


User provided reference genes

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