Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE11G1238 Ceratophyllum demersum HOM05D003456 ORTHO05D004082 1.1e-113 413.3 210 100.0
CDE02G3384 Ceratophyllum demersum HOM05D003456 ORTHO05D004082 2.9e-21 106.3 55 98.2
AUR62013762 Chenopodium quinoa HOM05D003456 ORTHO05D004082 3.3e-17 92.8 56 82.1
Ciclev10013682m.g Citrus clementina HOM05D003456 ORTHO05D004082 3.3e-17 92.8 63 71.4
AUR62023392 Chenopodium quinoa HOM05D003456 ORTHO05D004082 4.3e-17 92.4 56 82.1
Dinv09618 Davidia involucrata HOM05D003456 ORTHO05D004082 5.7e-17 92.0 56 82.1
Hma1.2p1_0232F.1_g097840 Hydrangea macrophylla HOM05D003456 ORTHO05D004082 7.4e-17 91.7 56 80.4
Manes.09G055901 Manihot esculenta HOM05D003456 ORTHO05D004082 7.4e-17 91.7 55 83.6
Nn2g14150 Nelumbo nucifera HOM05D003456 ORTHO05D004082 7.4e-17 91.7 55 83.6
Hund22272 Selenicereus undatus HOM05D003456 ORTHO05D004082 9.7e-17 91.3 56 80.4
TAR636G2922 Trochodendron aralioides HOM05D003456 ORTHO05D004082 2.2e-16 90.1 55 83.6
TWI53G1385 Tripterygium wilfordii HOM05D003456 ORTHO05D004082 3.7e-16 89.4 55 78.2
GSVIVG01033834001 Vitis vinifera HOM05D003456 ORTHO05D004082 4.8e-16 89.0 55 81.8
ATR0789G158 Amborella trichopoda HOM05D003456 ORTHO05D004082 6.3e-16 88.6 57 73.7
EL10Ac1g00743 Beta vulgaris HOM05D003456 ORTHO05D004082 8.2e-16 88.2 56 75.0
vmacro10309 Vaccinium macrocarpon HOM05D003456 ORTHO05D004082 1.1e-15 87.8 56 78.6
Dinv21215 Davidia involucrata HOM05D003456 ORTHO05D004082 1.4e-15 87.4 56 76.8
Solyc09g009440.3 Solanum lycopersicum HOM05D003456 ORTHO05D004082 1.4e-15 87.4 57 75.4
PSO339G3466 Papaver somniferum HOM05D003456 ORTHO05D004082 1.8e-15 87.0 55 80.0
Aqoxy2G01205 Aquilegia oxysepala HOM05D003456 ORTHO05D004082 2.4e-15 86.7 55 78.2
Os12g0485500 Oryza sativa ssp. japonica HOM05D003456 ORTHO05D004082 2.4e-15 86.7 54 75.9
TAR633G0109 Trochodendron aralioides HOM05D003456 ORTHO05D004082 2.4e-15 86.7 55 78.2
BolC3t18012H Brassica oleracea HOM05D003456 ORTHO05D004082 3.1e-15 86.3 61 68.9
PSO151G0153 Papaver somniferum HOM05D003456 ORTHO05D004082 3.1e-15 86.3 55 80.0
PSO170G1366 Papaver somniferum HOM05D003456 ORTHO05D004082 3.1e-15 86.3 55 80.0
PSO407G0116 Papaver somniferum HOM05D003456 ORTHO05D004082 3.1e-15 86.3 55 80.0
TWI74G0284 Tripterygium wilfordii HOM05D003456 ORTHO05D004082 3.1e-15 86.3 55 76.4
Actinidia31104 Actinidia chinensis HOM05D003456 ORTHO05D004082 4.1e-15 85.9 55 78.2
CAN.G397.10 Capsicum annuum HOM05D003456 ORTHO05D004082 4.1e-15 85.9 56 76.8
Lj1g0011692 Lotus japonicus HOM05D003456 ORTHO05D004082 4.1e-15 85.9 55 76.4
arahy.Tifrunner.gnm1.ann1.C03M9B Arachis hypogaea HOM05D003456 ORTHO05D004082 5.3e-15 85.5 55 76.4
arahy.Tifrunner.gnm1.ann1.P2449T Arachis hypogaea HOM05D003456 ORTHO05D004082 5.3e-15 85.5 55 76.4
arahy.Tifrunner.gnm1.ann1.VF2KJZ Arachis hypogaea HOM05D003456 ORTHO05D004082 5.3e-15 85.5 55 76.4
Actinidia34723 Actinidia chinensis HOM05D003456 ORTHO05D004082 6.9e-15 85.1 55 76.4
CANSAT56G1853 Cannabis sativa HOM05D003456 ORTHO05D004082 6.9e-15 85.1 52 78.8
CARHR106940 Cardamine hirsuta HOM05D003456 ORTHO05D004082 6.9e-15 85.1 55 76.4
Ciclev10017146m.g Citrus clementina HOM05D003456 ORTHO05D004082 6.9e-15 85.1 55 72.7
Sopen09g004180 Solanum pennellii HOM05D003456 ORTHO05D004082 6.9e-15 85.1 56 75.0
VMungo1383G3423 Vigna mungo HOM05D003456 ORTHO05D004082 6.9e-15 85.1 55 76.4
Nitab4.5_0001725g0170 Nicotiana tabacum HOM05D003456 ORTHO05D004082 9.1e-15 84.7 56 75.0
Nitab4.5_0005483g0040 Nicotiana tabacum HOM05D003456 ORTHO05D004082 9.1e-15 84.7 56 75.0
arahy.Tifrunner.gnm1.ann1.KEI5RC Arachis hypogaea HOM05D003456 ORTHO05D004082 1.2e-14 84.3 55 74.5
BraA03t13724Z Brassica rapa HOM05D003456 ORTHO05D004082 1.2e-14 84.3 68 61.8
CiPaw.13G039000 Carya illinoinensis HOM05D003456 ORTHO05D004082 1.2e-14 84.3 56 73.2
ECA233G4183 Erigeron canadensis HOM05D003456 ORTHO05D004082 1.2e-14 84.3 55 76.4
Phvul.001G189600 Phaseolus vulgaris HOM05D003456 ORTHO05D004082 1.2e-14 84.3 54 75.9
Psat6g013760 Pisum sativum HOM05D003456 ORTHO05D004082 1.2e-14 84.3 55 76.4
PGSC0003DMG401002701 Solanum tuberosum HOM05D003456 ORTHO05D004082 1.2e-14 84.3 56 75.0
TPR.G9901 Trifolium pratense HOM05D003456 ORTHO05D004082 1.2e-14 84.3 55 76.4
AL3G49380 Arabidopsis lyrata HOM05D003456 ORTHO05D004082 1.5e-14 84.0 55 74.5
AT2G16710 Arabidopsis thaliana HOM05D003456 ORTHO05D004082 1.5e-14 84.0 55 74.5
CSS0039541 Camellia sinensis var. sinensis HOM05D003456 ORTHO05D004082 1.5e-14 84.0 55 76.4
Carub.0001s3604 Capsella rubella HOM05D003456 ORTHO05D004082 1.5e-14 84.0 55 74.5
ClCG05G018420 Citrullus lanatus HOM05D003456 ORTHO05D004082 1.5e-14 84.0 55 76.4
Psat4g110960 Pisum sativum HOM05D003456 ORTHO05D004082 1.5e-14 84.0 55 76.4
Prupe.7G111000 Prunus persica HOM05D003456 ORTHO05D004082 1.5e-14 84.0 55 72.7
Ca_08885_v3 Cicer arietinum L. HOM05D003456 ORTHO05D004082 2.0e-14 83.6 55 74.5
Glyma.19G194700 Glycine max HOM05D003456 ORTHO05D004082 2.0e-14 83.6 55 74.5
Gohir.D04G100300 Gossypium hirsutum HOM05D003456 ORTHO05D004082 2.0e-14 83.6 56 76.8
Gorai.009G403300 Gossypium raimondii HOM05D003456 ORTHO05D004082 2.0e-14 83.6 56 76.8
MD12G1035500 Malus domestica HOM05D003456 ORTHO05D004082 2.0e-14 83.6 54 74.1
Oeu054399.2 Olea europaea HOM05D003456 ORTHO05D004082 2.0e-14 83.6 60 70.0
Sc09g0005350 Simmondsia chinensis HOM05D003456 ORTHO05D004082 2.0e-14 83.6 56 73.2
BcaC01g02994 Brassica carinata HOM05D003456 ORTHO05D004082 2.6e-14 83.2 55 72.7
A03p45960 Brassica napus HOM05D003456 ORTHO05D004082 2.6e-14 83.2 55 72.7
C03p57360 Brassica napus HOM05D003456 ORTHO05D004082 2.6e-14 83.2 55 72.7
Rhsim03G0097900 Rhododendron simsii HOM05D003456 ORTHO05D004082 2.6e-14 83.2 55 74.5
Sp3g30040 Schrenkiella parvula HOM05D003456 ORTHO05D004082 2.6e-14 83.2 55 72.7
MELO3C012350.2 Cucumis melo HOM05D003456 ORTHO05D004082 3.4e-14 82.8 55 72.7
Duzib128G1248 Durio zibethinus HOM05D003456 ORTHO05D004082 3.4e-14 82.8 56 76.8
Glyma.03G195000 Glycine max HOM05D003456 ORTHO05D004082 3.4e-14 82.8 55 74.5
MD14G1022300 Malus domestica HOM05D003456 ORTHO05D004082 3.4e-14 82.8 55 69.1
Potri.008G020400 Populus trichocarpa HOM05D003456 ORTHO05D004082 3.4e-14 82.8 55 78.2
ClCG05G021780 Citrullus lanatus HOM05D003456 ORTHO05D004082 4.5e-14 82.4 55 72.7
Nn6g34911 Nelumbo nucifera HOM05D003456 ORTHO05D004082 4.5e-14 82.4 55 72.7
PGR044G1450 Punica granatum HOM05D003456 ORTHO05D004082 4.5e-14 82.4 55 72.7
Hund06781 Selenicereus undatus HOM05D003456 ORTHO05D004082 4.5e-14 82.4 56 75.0
Hund06783 Selenicereus undatus HOM05D003456 ORTHO05D004082 4.5e-14 82.4 56 75.0
Atru.chr8.1550 Acer truncatum HOM05D003456 ORTHO05D004082 5.9e-14 82.0 55 74.5
Carub.0003s3046 Capsella rubella HOM05D003456 ORTHO05D004082 5.9e-14 82.0 55 72.7
Cpa.g.sc5.27 Carica papaya HOM05D003456 ORTHO05D004082 5.9e-14 82.0 55 74.5
COL.COLO4_29759 Corchorus olitorius HOM05D003456 ORTHO05D004082 5.9e-14 82.0 55 74.5
HanXRQChr08g0217241 Helianthus annuus HOM05D003456 ORTHO05D004082 5.9e-14 82.0 55 74.5
Lalb_Chr20g0111761 Lupinus albus HOM05D003456 ORTHO05D004082 5.9e-14 82.0 80 57.5
Potri.010G238800 Populus trichocarpa HOM05D003456 ORTHO05D004082 5.9e-14 82.0 55 78.2
Gohir.A04G063300 Gossypium hirsutum HOM05D003456 ORTHO05D004082 7.7e-14 81.6 56 76.8
QL04p044862 Quercus lobata HOM05D003456 ORTHO05D004082 1.0e-13 81.3 55 72.7
Oeu024811.2 Olea europaea HOM05D003456 ORTHO05D004082 1.3e-13 80.9 53 73.6
ATR0789G023 Amborella trichopoda HOM05D003456 ORTHO05D004082 1.7e-13 80.5 54 70.4
RcHm_v2.0_Chr6g0270521 Rosa chinensis HOM05D003456 ORTHO05D004082 1.7e-13 80.5 55 67.3
Aqoxy1G03742 Aquilegia oxysepala HOM05D003456 ORTHO05D004082 2.2e-13 80.1 54 74.1
Aqoxy3G02826 Aquilegia oxysepala HOM05D003456 ORTHO05D004082 2.2e-13 80.1 54 74.1
BcaB08g34660 Brassica carinata HOM05D003456 ORTHO05D004082 2.2e-13 80.1 55 70.9
Thhalv10022903m.g Eutrema salsugineum HOM05D003456 ORTHO05D004082 2.2e-13 80.1 55 70.9
Lsat_1_v5_gn_8_24141 Lactuca sativa HOM05D003456 ORTHO05D004082 2.2e-13 80.1 54 75.9
Rhsim09G0141900 Rhododendron simsii HOM05D003456 ORTHO05D004082 2.2e-13 80.1 53 75.5
BcaC04g23009 Brassica carinata HOM05D003456 ORTHO05D004082 2.9e-13 79.7 55 69.1
A09p11090 Brassica napus HOM05D003456 ORTHO05D004082 2.9e-13 79.7 55 69.1
BraA09t36751Z Brassica rapa HOM05D003456 ORTHO05D004082 2.9e-13 79.7 55 69.1
CANSAT56G3878 Cannabis sativa HOM05D003456 ORTHO05D004082 2.9e-13 79.7 52 73.1
Eucgr.J00259 Eucalyptus grandis HOM05D003456 ORTHO05D004082 2.9e-13 79.7 55 70.9
Sc20g0001150 Simmondsia chinensis HOM05D003456 ORTHO05D004082 2.9e-13 79.7 56 69.6
Sabra10G0187000 Salix brachista HOM05D003456 ORTHO05D004082 3.8e-13 79.3 55 74.5
BcaB07g31755 Brassica carinata HOM05D003456 ORTHO05D004082 6.5e-13 78.6 61 63.9
C09p13080 Brassica napus HOM05D003456 ORTHO05D004082 6.5e-13 78.6 54 68.5
QL07p038879 Quercus lobata HOM05D003456 ORTHO05D004082 6.5e-13 78.6 54 74.1
QL07p039199 Quercus lobata HOM05D003456 ORTHO05D004082 6.5e-13 78.6 54 74.1
Sabra08G0013700 Salix brachista HOM05D003456 ORTHO05D004082 6.5e-13 78.6 54 75.9
Thecc.09G106900 Theobroma cacao HOM05D003456 ORTHO05D004082 6.5e-13 78.6 56 73.2
Zm00001eb334200 Zea mays HOM05D003456 ORTHO05D004082 6.5e-13 78.6 48 79.2
Aa31LG8G13940 Aethionema arabicum HOM05D003456 ORTHO05D004082 8.5e-13 78.2 55 65.5
Cc02_g09640 Coffea canephora HOM05D003456 ORTHO05D004082 8.5e-13 78.2 53 75.5
THA.LOC104804331 Tarenaya hassleriana HOM05D003456 ORTHO05D004082 8.5e-13 78.2 62 62.9
Cfa016601 Carpinus fangiana HOM05D003456 ORTHO05D004082 1.1e-12 77.8 56 73.2
Haze_19603 Corylus avellana HOM05D003456 ORTHO05D004082 1.1e-12 77.8 56 73.2
Medtr1g060070 Medicago truncatula HOM05D003456 ORTHO05D004082 1.1e-12 77.8 55 72.7
Lalb_Chr25g0288351 Lupinus albus HOM05D003456 ORTHO05D004082 1.9e-12 77.0 55 70.9
Atru.chr12.1024 Acer truncatum HOM05D003456 ORTHO05D004082 4.2e-12 75.9 54 68.5
DCAR_009160 Daucus carota HOM05D003456 ORTHO05D004082 4.2e-12 75.9 56 67.9
DCAR_020755 Daucus carota HOM05D003456 ORTHO05D004082 4.2e-12 75.9 56 66.1
Gohir.D09G011800 Gossypium hirsutum HOM05D003456 ORTHO05D004082 4.2e-12 75.9 56 71.4
RcHm_v2.0_Chr3g0473171 Rosa chinensis HOM05D003456 ORTHO05D004082 4.2e-12 75.9 55 67.3
Gorai.006G013800 Gossypium raimondii HOM05D003456 ORTHO05D004082 5.5e-12 75.5 56 69.6
Cc00_g28380 Coffea canephora HOM05D003456 ORTHO05D004082 7.2e-12 75.1 48 77.1
Nitab4.5_0011538g0030 Nicotiana tabacum HOM05D003456 ORTHO05D004082 7.2e-12 75.1 47 76.6
Mapoly0089s0049 Marchantia polymorpha HOM05D003456 ORTHO05D004082 9.4e-12 74.7 56 60.7
Solyc11g006920.2 Solanum lycopersicum HOM05D003456 ORTHO05D004082 9.4e-12 74.7 47 74.5
Sopen11g002830 Solanum pennellii HOM05D003456 ORTHO05D004082 9.4e-12 74.7 47 74.5
CBR_g4764 Chara braunii HOM05D003456 ORTHO05D004082 1.6e-11 73.9 57 64.9
Sed0026028 Sechium edule HOM05D003456 ORTHO05D004082 1.6e-11 73.9 49 73.5
Zm00001eb126830 Zea mays HOM05D003456 ORTHO05D004082 1.6e-11 73.9 48 72.9
Migut.F00877 Erythranthe guttata HOM05D003456 ORTHO05D004082 2.1e-11 73.6 47 76.6
PGSC0003DMG400023972 Solanum tuberosum HOM05D003456 ORTHO05D004082 2.1e-11 73.6 47 74.5
unitig_0.g1020 Utricularia gibba HOM05D003456 ORTHO05D004082 2.1e-11 73.6 47 74.5
Cpa.g.sc56.14 Carica papaya HOM05D003456 ORTHO05D004082 2.7e-11 73.2 45 80.0
SalBow6G0063 Salvia bowleyana HOM05D003456 ORTHO05D004082 3.6e-11 72.8 47 76.6
SGA_v2.0_scaffold85G26612 Striga asiatica HOM05D003456 ORTHO05D004082 3.6e-11 72.8 47 74.5
AagrBONN_evm.TU.Sc2ySwM_362.959 Anthoceros agrestis HOM05D003456 ORTHO05D004082 4.7e-11 72.4 54 63.0
FAN02G4247 Fragaria x ananassa HOM05D003456 ORTHO05D004082 4.7e-11 72.4 55 63.6
FAN09G3852 Fragaria x ananassa HOM05D003456 ORTHO05D004082 4.7e-11 72.4 55 63.6
CiPaw.09G013300 Carya illinoinensis HOM05D003456 ORTHO05D004082 6.1e-11 72.0 56 66.1
FvH4_6g18590 Fragaria vesca HOM05D003456 ORTHO05D004082 6.1e-11 72.0 55 63.6
FAN14G1410 Fragaria x ananassa HOM05D003456 ORTHO05D004082 6.1e-11 72.0 55 63.6
SGA_v2.0_scaffold62G21335 Striga asiatica HOM05D003456 ORTHO05D004082 6.1e-11 72.0 83 51.8
MSTRG.27572 Avicennia marina HOM05D003456 ORTHO05D004082 7.9e-11 71.6 48 70.8
Oeu026593.1 Olea europaea HOM05D003456 ORTHO05D004082 7.9e-11 71.6 47 76.6
SalBow6G0069 Salvia bowleyana HOM05D003456 ORTHO05D004082 7.9e-11 71.6 47 74.5
FAN05G2371 Fragaria x ananassa HOM05D003456 ORTHO05D004082 1.0e-10 71.2 46 73.9
FAN05G5536 Fragaria x ananassa HOM05D003456 ORTHO05D004082 1.0e-10 71.2 55 63.6
Cc05_g02390 Coffea canephora HOM05D003456 ORTHO05D004082 1.4e-10 70.9 53 69.8
CsaV3_5G035380 Cucumis sativus L. HOM05D003456 ORTHO05D004082 1.4e-10 70.9 44 79.5
Migut.F01607 Erythranthe guttata HOM05D003456 ORTHO05D004082 1.4e-10 70.9 47 74.5
FAN24G1424 Fragaria x ananassa HOM05D003456 ORTHO05D004082 1.8e-10 70.5 55 63.6
Pp3c18_19580 Physcomitrium patens HOM05D003456 ORTHO05D004082 1.8e-10 70.5 56 58.9
FvH4_2g10490 Fragaria vesca HOM05D003456 ORTHO05D004082 2.3e-10 70.1 55 63.6
SMO147G0221 Selaginella moellendorffii HOM05D003456 ORTHO05D004082 1.5e-09 67.4 48 64.6
Os01g0105800 Oryza sativa ssp. japonica HOM05D003456 ORTHO05D004082 2.0e-09 67.0 40 80.0
Cre09.g400775 Chlamydomonas reinhardtii HOM05D003456 ORTHO05D004082 9.7e-09 64.7 65 49.2
AT2G36260 Arabidopsis thaliana HOM05D003456 ORTHO05D004082 2.8e-08 63.2 47 63.8
Aa31LG5G21390 Aethionema arabicum HOM05D003456 ORTHO05D004082 3.7e-08 62.8 45 64.4
MCO14G517 Micromonas commoda HOM05D003456 ORTHO05D004082 8.2e-08 61.6 76 42.1
RcHm_v2.0_Chr7g0219151 Rosa chinensis HOM05D003456 ORTHO05D004082 1.1e-07 61.2 39 71.8
Nn5g30493 Nelumbo nucifera HOM05D003456 ORTHO05D004082 3.5e-06 56.2 65 53.8
RcHm_v2.0_Chr6g0245041 Rosa chinensis HOM05D003456 ORTHO05D004082 3.5e-06 56.2 36 75.0
Nn4g25160 Nelumbo nucifera HOM05D003456 ORTHO05D004082 5.9e-06 55.5 53 58.5


User provided reference genes

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