Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE11G1187 Ceratophyllum demersum HOM05D005424 ORTHO05D006726 0.0e+00 1729.9 901 100.0
GSVIVG01019675001 Vitis vinifera HOM05D005424 ORTHO05D006726 6.1e-92 343.2 1024 33.1
Nn7g38300 Nelumbo nucifera HOM05D005424 ORTHO05D006726 9.7e-90 335.9 1080 32.4
Dinv12891 Davidia involucrata HOM05D005424 ORTHO05D006726 2.8e-89 334.3 1050 32.4
Manes.01G055600 Manihot esculenta HOM05D005424 ORTHO05D006726 3.1e-88 330.9 1053 33.2
MBI12_g14812_MAGBIO Magnolia biondii HOM05D005424 ORTHO05D006726 4.5e-87 327.0 1086 31.4
Gohir.D12G242600 Gossypium hirsutum HOM05D005424 ORTHO05D006726 2.9e-86 324.3 1039 31.1
TWI81G0285 Tripterygium wilfordii HOM05D005424 ORTHO05D006726 5.0e-86 323.6 1029 32.2
CSS0028831 Camellia sinensis var. sinensis HOM05D005424 ORTHO05D006726 8.5e-86 322.8 1022 31.7
Cfa011902 Carpinus fangiana HOM05D005424 ORTHO05D006726 8.5e-86 322.8 1040 32.2
Gorai.008G259800 Gossypium raimondii HOM05D005424 ORTHO05D006726 4.2e-85 320.5 1044 31.0
Potri.011G152600 Populus trichocarpa HOM05D005424 ORTHO05D006726 4.2e-85 320.5 1015 32.3
CiPaw.11G110500 Carya illinoinensis HOM05D005424 ORTHO05D006726 9.4e-85 319.3 1026 31.8
Gohir.A12G241300 Gossypium hirsutum HOM05D005424 ORTHO05D006726 7.9e-84 316.2 1038 30.7
Potri.001G448900 Populus trichocarpa HOM05D005424 ORTHO05D006726 1.1e-82 312.4 1031 31.4
CANSAT21G2321 Cannabis sativa HOM05D005424 ORTHO05D006726 2.6e-82 311.2 1039 32.4
RcHm_v2.0_Chr7g0187521 Rosa chinensis HOM05D005424 ORTHO05D006726 3.3e-82 310.8 990 30.6
Rhsim07G0076500 Rhododendron simsii HOM05D005424 ORTHO05D006726 4.4e-82 310.5 1058 31.4
COL.COLO4_10822 Corchorus olitorius HOM05D005424 ORTHO05D006726 5.7e-82 310.1 1032 30.1
FvH4_5g10620 Fragaria vesca HOM05D005424 ORTHO05D006726 5.7e-82 310.1 1030 30.4
FAN13G2865 Fragaria x ananassa HOM05D005424 ORTHO05D006726 5.7e-82 310.1 1023 30.5
Sabra16G0303000 Salix brachista HOM05D005424 ORTHO05D006726 1.3e-81 308.9 1012 31.4
FAN08G3416 Fragaria x ananassa HOM05D005424 ORTHO05D006726 2.8e-81 307.8 1039 30.9
Thecc.03G218200 Theobroma cacao HOM05D005424 ORTHO05D006726 4.8e-81 307.0 1050 31.6
Prupe.5G132500 Prunus persica HOM05D005424 ORTHO05D006726 1.4e-80 305.4 1023 30.8
Eucgr.D01670 Eucalyptus grandis HOM05D005424 ORTHO05D006726 1.8e-80 305.1 1063 30.1
ClCG08G001970 Citrullus lanatus HOM05D005424 ORTHO05D006726 2.0e-79 301.6 1027 30.8
vmacro13840 Vaccinium macrocarpon HOM05D005424 ORTHO05D006726 1.3e-78 298.9 1099 30.2
FAN18G4434 Fragaria x ananassa HOM05D005424 ORTHO05D006726 5.0e-78 297.0 1053 29.7
Duzib205G0106 Durio zibethinus HOM05D005424 ORTHO05D006726 1.1e-77 295.8 1029 31.3
Dinv18754 Davidia involucrata HOM05D005424 ORTHO05D006726 1.5e-77 295.4 1035 31.3
QL02p027371 Quercus lobata HOM05D005424 ORTHO05D006726 5.5e-77 293.5 1032 31.2
Atru.chr9.1859 Acer truncatum HOM05D005424 ORTHO05D006726 7.2e-77 293.1 1001 31.1
MD06G1121800 Malus domestica HOM05D005424 ORTHO05D006726 7.2e-77 293.1 1036 30.1
MELO3C025037.2 Cucumis melo HOM05D005424 ORTHO05D006726 2.7e-76 291.2 1025 30.3
CDE02G2470 Ceratophyllum demersum HOM05D005424 ORTHO05D006726 8.0e-76 289.7 189 85.7
Aqoxy7G00007 Aquilegia oxysepala HOM05D005424 ORTHO05D006726 1.4e-75 288.9 1131 31.0
Duzib068G1314 Durio zibethinus HOM05D005424 ORTHO05D006726 1.4e-75 288.9 1004 31.5
Nitab4.5_0002520g0100 Nicotiana tabacum HOM05D005424 ORTHO05D006726 4.0e-75 287.3 970 30.4
PSO063G2765 Papaver somniferum HOM05D005424 ORTHO05D006726 8.8e-75 286.2 1034 29.6
CsaV3_6G002490 Cucumis sativus L. HOM05D005424 ORTHO05D006726 1.5e-74 285.4 1039 30.5
Nitab4.5_0003419g0090 Nicotiana tabacum HOM05D005424 ORTHO05D006726 2.6e-74 284.6 1031 30.5
PGR031G0320 Punica granatum HOM05D005424 ORTHO05D006726 4.4e-74 283.9 999 29.6
Sc01g0010800 Simmondsia chinensis HOM05D005424 ORTHO05D006726 7.5e-74 283.1 992 29.3
Ciclev10018587m.g Citrus clementina HOM05D005424 ORTHO05D006726 2.2e-73 281.6 1007 29.4
Sopen08g031500 Solanum pennellii HOM05D005424 ORTHO05D006726 8.2e-73 279.6 1027 29.8
HanXRQChr07g0192271 Helianthus annuus HOM05D005424 ORTHO05D006726 1.8e-72 278.5 960 30.2
THA.LOC104806458 Tarenaya hassleriana HOM05D005424 ORTHO05D006726 1.8e-72 278.5 984 31.4
CAN.G567.102 Capsicum annuum HOM05D005424 ORTHO05D006726 7.0e-72 276.6 996 29.8
EL10Ac5g12404 Beta vulgaris HOM05D005424 ORTHO05D006726 4.5e-71 273.9 996 29.1
THA.LOC104813063 Tarenaya hassleriana HOM05D005424 ORTHO05D006726 4.5e-71 273.9 982 30.7
Aa31LG6G7470 Aethionema arabicum HOM05D005424 ORTHO05D006726 1.7e-70 271.9 920 30.8
Cpa.g.sc37.92 Carica papaya HOM05D005424 ORTHO05D006726 5.0e-70 270.4 1032 29.9
Lalb_Chr21g0311601 Lupinus albus HOM05D005424 ORTHO05D006726 5.0e-70 270.4 1017 29.9
Cc08_g16940 Coffea canephora HOM05D005424 ORTHO05D006726 8.5e-70 269.6 1017 31.0
PSO782G1858 Papaver somniferum HOM05D005424 ORTHO05D006726 3.0e-67 261.2 1022 28.4
Lalb_Chr21g0311581 Lupinus albus HOM05D005424 ORTHO05D006726 4.0e-67 260.8 1026 29.8
BcaB04g17977 Brassica carinata HOM05D005424 ORTHO05D006726 1.1e-64 252.7 915 30.7
Ca_09953_v3 Cicer arietinum L. HOM05D005424 ORTHO05D006726 1.8e-64 251.9 1047 29.6
CARHR032180 Cardamine hirsuta HOM05D005424 ORTHO05D006726 7.0e-64 250.0 926 28.9
Hund11337 Selenicereus undatus HOM05D005424 ORTHO05D006726 9.1e-64 249.6 1025 28.9
MSTRG.13701 Avicennia marina HOM05D005424 ORTHO05D006726 2.0e-63 248.4 985 30.2
Medtr1g077940 Medicago truncatula HOM05D005424 ORTHO05D006726 2.7e-63 248.1 1057 28.5
ECA233G6131 Erigeron canadensis HOM05D005424 ORTHO05D006726 4.5e-63 247.3 974 28.6
TAR636G1325 Trochodendron aralioides HOM05D005424 ORTHO05D006726 4.5e-63 247.3 504 39.5
Thhalv10006636m.g Eutrema salsugineum HOM05D005424 ORTHO05D006726 7.7e-63 246.5 955 29.1
Lj5g0003487 Lotus japonicus HOM05D005424 ORTHO05D006726 2.2e-62 245.0 1049 28.3
Psat6g052720 Pisum sativum HOM05D005424 ORTHO05D006726 2.9e-62 244.6 1046 29.3
arahy.Tifrunner.gnm1.ann1.BAML4E Arachis hypogaea HOM05D005424 ORTHO05D006726 5.0e-62 243.8 1014 29.8
Sp1g28160 Schrenkiella parvula HOM05D005424 ORTHO05D006726 1.5e-61 242.3 964 28.6
Lsat_1_v5_gn_6_11441 Lactuca sativa HOM05D005424 ORTHO05D006726 1.9e-61 241.9 954 30.4
AL1G47110 Arabidopsis lyrata HOM05D005424 ORTHO05D006726 7.2e-61 240.0 952 29.2
BcaC07g37610 Brassica carinata HOM05D005424 ORTHO05D006726 9.4e-61 239.6 953 29.6
BolC8t47971H Brassica oleracea HOM05D005424 ORTHO05D006726 9.4e-61 239.6 899 29.8
A08p09200 Brassica napus HOM05D005424 ORTHO05D006726 8.0e-60 236.5 891 30.2
Glyma.20G217700 Glycine max HOM05D005424 ORTHO05D006726 8.0e-60 236.5 1013 28.4
Haze_09196 Corylus avellana HOM05D005424 ORTHO05D006726 5.2e-59 233.8 1098 28.1
Peaxi162Scf00074g00151 Petunia axillaris HOM05D005424 ORTHO05D006726 8.8e-59 233.0 428 41.4
Carub.0001s3113 Capsella rubella HOM05D005424 ORTHO05D006726 2.6e-58 231.5 967 28.5
Oeu010728.1 Olea europaea HOM05D005424 ORTHO05D006726 2.6e-58 231.5 907 30.0
AT1G32810 Arabidopsis thaliana HOM05D005424 ORTHO05D006726 7.5e-58 229.9 942 28.2
Sabra11G0148200 Salix brachista HOM05D005424 ORTHO05D006726 4.9e-57 227.3 492 38.2
AUR62007075 Chenopodium quinoa HOM05D005424 ORTHO05D006726 1.4e-56 225.7 968 28.5
Glyma.10G172500 Glycine max HOM05D005424 ORTHO05D006726 3.1e-56 224.6 1032 28.4
Migut.E00727 Erythranthe guttata HOM05D005424 ORTHO05D006726 9.1e-56 223.0 968 28.3
Sed0006250 Sechium edule HOM05D005424 ORTHO05D006726 1.2e-55 222.6 972 28.2
BraA08t32921Z Brassica rapa HOM05D005424 ORTHO05D006726 2.0e-55 221.9 919 28.3
VMungo0720G0206 Vigna mungo HOM05D005424 ORTHO05D006726 2.5e-53 214.9 1026 27.5
Solyc08g083290.4 Solanum lycopersicum HOM05D005424 ORTHO05D006726 4.7e-52 210.7 834 29.7
SGA_v2.0_scaffold88G27243 Striga asiatica HOM05D005424 ORTHO05D006726 5.2e-51 207.2 994 28.3
Phvul.L004801 Phaseolus vulgaris HOM05D005424 ORTHO05D006726 2.0e-50 205.3 1060 26.5
Lj2A154T41 Lonicera japonica HOM05D005424 ORTHO05D006726 2.9e-49 201.4 453 39.1
DCAR_009582 Daucus carota HOM05D005424 ORTHO05D006726 1.0e-46 193.0 1000 27.7
AUR62019939 Chenopodium quinoa HOM05D005424 ORTHO05D006726 6.6e-46 190.3 1012 27.0
Os04g0221600 Oryza sativa ssp. japonica HOM05D005424 ORTHO05D006726 6.2e-44 183.7 917 25.4
Ah.12g053330 Amaranthus hybridus HOM05D001091 ORTHO05D001020 1.5e-42 179.1 957 26.1
Ah.07g198200 Amaranthus hybridus HOM05D005424 ORTHO05D006726 9.8e-42 176.4 337 39.8
Aqoxy8s003 Aquilegia oxysepala HOM05D005424 ORTHO05D006726 1.7e-38 165.6 325 40.0
HPP92_001577 Vanilla planifolia HOM05D005424 ORTHO05D006726 2.3e-38 165.2 437 34.6
SEGI_18929 Sequoiadendron giganteum HOM05D005424 ORTHO05D006726 2.8e-36 158.3 460 31.3
PGSC0003DMG402012227 Solanum tuberosum HOM05D005424 ORTHO05D006726 5.2e-35 154.1 789 26.9
TAR374G0493 Trochodendron aralioides HOM05D005424 ORTHO05D006726 1.2e-34 152.9 252 42.1
unitig_699.g19549 Utricularia gibba HOM05D005424 ORTHO05D006726 1.7e-33 149.1 444 34.9
DCAR_019998 Daucus carota HOM05D005424 ORTHO05D006726 2.9e-33 148.3 317 38.8
SHI06919 Sapria himalayana HOM05D005424 ORTHO05D006726 6.4e-33 147.1 232 41.4
TAR636G2842 Trochodendron aralioides HOM05D005424 ORTHO05D006726 6.0e-31 140.6 421 30.9
AagrBONN_evm.TU.Sc2ySwM_117.701 Anthoceros agrestis HOM05D005424 ORTHO05D006726 1.9e-24 119.0 391 30.7
ATR0078G022 Amborella trichopoda HOM05D005424 ORTHO05D006726 3.0e-22 111.7 979 23.1
TPR.G34809 Trifolium pratense HOM05D005424 ORTHO05D006726 6.6e-22 110.5 865 25.0
Sabra11G0148100 Salix brachista HOM05D005424 ORTHO05D006726 9.6e-21 106.7 302 30.1
Mapoly0057s0069 Marchantia polymorpha HOM05D005424 ORTHO05D006726 2.4e-19 102.1 441 29.5
HPP92_001576 Vanilla planifolia HOM05D005424 ORTHO05D006726 2.0e-18 99.0 152 35.5
Carub.0006s2937 Capsella rubella HOM05D005424 ORTHO05D006726 1.7e-17 95.9 150 36.0
TPR.G34808 Trifolium pratense HOM05D005424 ORTHO05D006726 3.8e-17 94.7 130 42.3
AL6G44650 Arabidopsis lyrata HOM05D005424 ORTHO05D006726 1.6e-15 89.4 155 35.5
Oeu038526.1 Olea europaea HOM05D000700 ORTHO05D000397 1.6e-15 89.4 288 30.6
Thhalv10029370m.g Eutrema salsugineum HOM05D005424 ORTHO05D006726 2.1e-15 89.0 92 46.7
Lj2A154T42 Lonicera japonica HOM05D005424 ORTHO05D006726 2.1e-15 89.0 303 30.0
Sp6g06850 Schrenkiella parvula HOM05D005424 ORTHO05D006726 6.0e-15 87.4 166 35.5
Aa31LG9G11400 Aethionema arabicum HOM05D005424 ORTHO05D006726 5.1e-14 84.3 159 34.6
Ah.07g198210 Amaranthus hybridus HOM05D005424 ORTHO05D006726 8.7e-14 83.6 146 39.0
AT4G10600 Arabidopsis thaliana HOM05D005424 ORTHO05D006726 8.7e-14 83.6 144 33.3
A09p28640 Brassica napus HOM05D005424 ORTHO05D006726 1.6e-12 79.3 65 50.8
BraA09t38425Z Brassica rapa HOM05D005424 ORTHO05D006726 1.6e-12 79.3 65 50.8
TAR374G0755 Trochodendron aralioides HOM05D005424 ORTHO05D006726 2.1e-12 79.0 111 38.7
BcaC04g21045 Brassica carinata HOM05D005424 ORTHO05D006726 6.2e-12 77.4 65 50.8
C09p36300 Brassica napus HOM05D005424 ORTHO05D006726 6.2e-12 77.4 65 50.8
BolC9t56467H Brassica oleracea HOM05D005424 ORTHO05D006726 6.2e-12 77.4 65 50.8
BcaB01g02745 Brassica carinata HOM05D005424 ORTHO05D006726 1.8e-11 75.9 52 55.8
CARHR256000 Cardamine hirsuta HOM05D005424 ORTHO05D006726 4.0e-11 74.7 51 54.9
Zm00001eb086720 Zea mays HOM05D005424 ORTHO05D006726 2.9e-09 68.6 227 28.2
Pp3c25_5890 Physcomitrium patens HOM05D005424 ORTHO05D006726 1.1e-08 66.6 162 30.2
SEGI_29779 Sequoiadendron giganteum HOM05D005424 ORTHO05D006726 1.3e-06 59.7 177 29.9


User provided reference genes

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