Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE11G1125 Ceratophyllum demersum HOM05D002996 ORTHO05D003536 1.9e-56 222.2 109 100.0
CDE10G0501 Ceratophyllum demersum HOM05D002996 ORTHO05D003536 1.2e-42 176.4 92 96.7
MBI16_g14302_MAGBIO Magnolia biondii HOM05D002996 ORTHO05D003536 3.0e-38 161.8 92 85.9
CSS0002683 Camellia sinensis var. sinensis HOM05D002996 ORTHO05D003536 4.0e-38 161.4 92 87.0
Ciclev10010941m.g Citrus clementina HOM05D002996 ORTHO05D003536 4.0e-38 161.4 92 87.0
Nn4g24147 Nelumbo nucifera HOM05D002996 ORTHO05D003536 4.0e-38 161.4 92 87.0
Prupe.3G159400 Prunus persica HOM05D002996 ORTHO05D003536 5.2e-38 161.0 92 88.0
EL10Ac2g04480 Beta vulgaris HOM05D002996 ORTHO05D003536 1.2e-37 159.8 92 85.9
Rhsim08G0086100 Rhododendron simsii HOM05D002996 ORTHO05D003536 1.2e-37 159.8 92 88.0
vmacro18050 Vaccinium macrocarpon HOM05D002996 ORTHO05D003536 1.2e-37 159.8 92 88.0
HanXRQChr07g0193641 Helianthus annuus HOM05D002996 ORTHO05D003536 1.5e-37 159.5 92 87.0
Hund16206 Selenicereus undatus HOM05D002996 ORTHO05D003536 2.0e-37 159.1 92 85.9
Ah.16g101290 Amaranthus hybridus HOM05D002996 ORTHO05D003536 2.6e-37 158.7 92 85.9
ClCG05G010970 Citrullus lanatus HOM05D002996 ORTHO05D003536 2.6e-37 158.7 92 87.0
MELO3C020288.2 Cucumis melo HOM05D002996 ORTHO05D003536 2.6e-37 158.7 92 87.0
CsaV3_1G027780 Cucumis sativus L. HOM05D002996 ORTHO05D003536 3.3e-37 158.3 92 85.9
CsaV3_3G021610 Cucumis sativus L. HOM05D002996 ORTHO05D003536 3.3e-37 158.3 92 85.9
TWI74G1665 Tripterygium wilfordii HOM05D002996 ORTHO05D003536 3.3e-37 158.3 92 85.9
Glyma.11G218000 Glycine max HOM05D002996 ORTHO05D003536 4.4e-37 157.9 92 84.8
Manes.02G074800 Manihot esculenta HOM05D002996 ORTHO05D003536 4.4e-37 157.9 92 83.7
ATR0053G010 Amborella trichopoda HOM05D002996 ORTHO05D003536 5.7e-37 157.5 92 84.8
Cc07_g08150 Coffea canephora HOM05D002996 ORTHO05D003536 5.7e-37 157.5 92 83.7
Duzib211G0161 Durio zibethinus HOM05D002996 ORTHO05D003536 5.7e-37 157.5 92 85.9
FvH4_5g27890 Fragaria vesca HOM05D002996 ORTHO05D003536 5.7e-37 157.5 92 85.9
FAN08G1319 Fragaria x ananassa HOM05D002996 ORTHO05D003536 5.7e-37 157.5 92 85.9
FAN18G1791 Fragaria x ananassa HOM05D002996 ORTHO05D003536 5.7e-37 157.5 92 85.9
Glyma.18G039000 Glycine max HOM05D002996 ORTHO05D003536 5.7e-37 157.5 92 83.7
Gohir.A08G052700 Gossypium hirsutum HOM05D002996 ORTHO05D003536 5.7e-37 157.5 92 85.9
Gohir.D08G062300 Gossypium hirsutum HOM05D002996 ORTHO05D003536 5.7e-37 157.5 92 85.9
Gorai.004G064500 Gossypium raimondii HOM05D002996 ORTHO05D003536 5.7e-37 157.5 92 85.9
Manes.01G115900 Manihot esculenta HOM05D002996 ORTHO05D003536 5.7e-37 157.5 92 84.8
Phvul.001G231700 Phaseolus vulgaris HOM05D002996 ORTHO05D003536 5.7e-37 157.5 92 83.7
CiPaw.03G068900 Carya illinoinensis HOM05D002996 ORTHO05D003536 7.5e-37 157.1 92 84.8
COL.COLO4_15723 Corchorus olitorius HOM05D002996 ORTHO05D003536 7.5e-37 157.1 92 84.8
Lj6g0006116 Lotus japonicus HOM05D002996 ORTHO05D003536 7.5e-37 157.1 92 83.7
MD17G1256700 Malus domestica HOM05D002996 ORTHO05D003536 7.5e-37 157.1 92 84.8
Potri.017G128300 Populus trichocarpa HOM05D002996 ORTHO05D003536 7.5e-37 157.1 92 85.9
Haze_14227 Corylus avellana HOM05D002996 ORTHO05D003536 9.7e-37 156.8 92 83.7
Migut.L00466 Erythranthe guttata HOM05D002996 ORTHO05D003536 9.7e-37 156.8 92 84.8
TAR622G0566 Trochodendron aralioides HOM05D002996 ORTHO05D003536 9.7e-37 156.8 92 84.8
GSVIVG01030858001 Vitis vinifera HOM05D002996 ORTHO05D003536 9.7e-37 156.8 92 84.8
AL3G13060 Arabidopsis lyrata HOM05D002996 ORTHO05D003536 1.3e-36 156.4 92 81.5
AT3G03380 Arabidopsis thaliana HOM05D002996 ORTHO05D003536 1.3e-36 156.4 92 81.5
Thecc.04G120500 Theobroma cacao HOM05D002996 ORTHO05D003536 1.3e-36 156.4 92 84.8
Actinidia17659 Actinidia chinensis HOM05D002996 ORTHO05D003536 1.7e-36 156.0 92 84.8
CARHR077410 Cardamine hirsuta HOM05D002996 ORTHO05D003536 1.7e-36 156.0 92 81.5
Thhalv10019951m.g Eutrema salsugineum HOM05D002996 ORTHO05D003536 1.7e-36 156.0 92 81.5
RcHm_v2.0_Chr7g0220101 Rosa chinensis HOM05D002996 ORTHO05D003536 1.7e-36 156.0 92 85.9
Lalb_Chr15g0084771 Lupinus albus HOM05D002996 ORTHO05D003536 2.2e-36 155.6 92 84.8
Sp3g02390 Schrenkiella parvula HOM05D002996 ORTHO05D003536 2.2e-36 155.6 92 81.5
TWI77G0049 Tripterygium wilfordii HOM05D002996 ORTHO05D003536 2.2e-36 155.6 92 83.7
CSS0016713 Camellia sinensis var. sinensis HOM05D002996 ORTHO05D003536 2.8e-36 155.2 92 82.6
Carub.0003s0254 Capsella rubella HOM05D002996 ORTHO05D003536 2.8e-36 155.2 92 80.4
Cpa.g.c28186.1 Carica papaya HOM05D002996 ORTHO05D003536 2.8e-36 155.2 92 84.8
Nitab4.5_0003360g0070 Nicotiana tabacum HOM05D002996 ORTHO05D003536 2.8e-36 155.2 92 82.6
Nitab4.5_0004399g0040 Nicotiana tabacum HOM05D002996 ORTHO05D003536 2.8e-36 155.2 92 82.6
arahy.Tifrunner.gnm1.ann1.GD0F1M Arachis hypogaea HOM05D002996 ORTHO05D003536 3.7e-36 154.8 90 84.4
arahy.Tifrunner.gnm1.ann1.RDL55E Arachis hypogaea HOM05D002996 ORTHO05D003536 3.7e-36 154.8 90 84.4
CAN.G625.86 Capsicum annuum HOM05D002996 ORTHO05D003536 3.7e-36 154.8 92 83.7
Cfa007838 Carpinus fangiana HOM05D002996 ORTHO05D003536 3.7e-36 154.8 92 82.6
THA.LOC104827237 Tarenaya hassleriana HOM05D002996 ORTHO05D003536 3.7e-36 154.8 92 83.7
VMungo1383G2581 Vigna mungo HOM05D002996 ORTHO05D003536 3.7e-36 154.8 92 82.6
Hma1.2p1_0832F.1_g225610 Hydrangea macrophylla HOM05D002996 ORTHO05D003536 4.8e-36 154.5 94 83.0
Psat5g122480 Pisum sativum HOM05D002996 ORTHO05D003536 4.8e-36 154.5 92 83.7
Sc10g0000820 Simmondsia chinensis HOM05D002996 ORTHO05D003536 6.3e-36 154.1 92 84.8
Solyc02g091410.3 Solanum lycopersicum HOM05D002996 ORTHO05D003536 6.3e-36 154.1 92 82.6
Sopen02g036030 Solanum pennellii HOM05D002996 ORTHO05D003536 6.3e-36 154.1 92 82.6
PGSC0003DMG402030647 Solanum tuberosum HOM05D002996 ORTHO05D003536 6.3e-36 154.1 92 82.6
CANSAT78G2389 Cannabis sativa HOM05D002996 ORTHO05D003536 8.2e-36 153.7 92 83.7
BcaC09g47743 Brassica carinata HOM05D002996 ORTHO05D003536 1.1e-35 153.3 91 80.2
BolC1t05834H Brassica oleracea HOM05D002996 ORTHO05D003536 1.1e-35 153.3 91 80.2
TAR374G0579 Trochodendron aralioides HOM05D002996 ORTHO05D003536 1.1e-35 153.3 92 83.7
Aqoxy3G00131_Aqoxy3G00132 Aquilegia oxysepala HOM05D002996 ORTHO05D003536 1.4e-35 152.9 92 81.5
BcaC05g30533 Brassica carinata HOM05D002996 ORTHO05D003536 1.4e-35 152.9 92 79.3
BNapus_Darmor_BZH_scaffold_162p00130 Brassica napus HOM05D002996 ORTHO05D003536 1.4e-35 152.9 91 79.1
BraA05t23122Z Brassica rapa HOM05D002996 ORTHO05D003536 1.4e-35 152.9 92 79.3
CSS0044512 Camellia sinensis var. sinensis HOM05D002996 ORTHO05D003536 1.4e-35 152.9 92 81.5
Dinv14879 Davidia involucrata HOM05D002996 ORTHO05D003536 1.4e-35 152.9 92 82.6
Lsat_1_v5_gn_2_81521 Lactuca sativa HOM05D002996 ORTHO05D003536 1.4e-35 152.9 92 82.6
AUR62023190 Chenopodium quinoa HOM05D002996 ORTHO05D003536 1.8e-35 152.5 92 81.5
AUR62023237 Chenopodium quinoa HOM05D002996 ORTHO05D003536 1.8e-35 152.5 92 81.5
Sabra17G0107000 Salix brachista HOM05D002996 ORTHO05D003536 1.8e-35 152.5 92 82.6
A05p43840 Brassica napus HOM05D002996 ORTHO05D003536 2.4e-35 152.1 92 79.3
MSTRG.3518 Avicennia marina HOM05D002996 ORTHO05D003536 3.1e-35 151.8 92 82.6
Oeu000903.1 Olea europaea HOM05D002996 ORTHO05D003536 3.1e-35 151.8 92 81.5
Sed0026936 Sechium edule HOM05D002996 ORTHO05D003536 3.1e-35 151.8 92 83.7
QL11p004079 Quercus lobata HOM05D002996 ORTHO05D003536 4.1e-35 151.4 90 82.2
MSTRG.15319 Avicennia marina HOM05D002996 ORTHO05D003536 5.3e-35 151.0 92 82.6
Oeu047419.3 Olea europaea HOM05D002996 ORTHO05D003536 5.3e-35 151.0 92 82.6
Pp3c2_7790 Physcomitrium patens HOM05D002996 ORTHO05D003536 5.3e-35 151.0 92 77.2
C05p63430 Brassica napus HOM05D002996 ORTHO05D003536 7.0e-35 150.6 92 78.3
BolC5t35007H Brassica oleracea HOM05D002996 ORTHO05D003536 7.0e-35 150.6 92 78.3
Ca_08163_v3 Cicer arietinum L. HOM05D002996 ORTHO05D003536 7.0e-35 150.6 92 83.7
Ca_17109_v3 Cicer arietinum L. HOM05D002996 ORTHO05D003536 7.0e-35 150.6 92 83.7
DCAR_010738 Daucus carota HOM05D002996 ORTHO05D003536 7.0e-35 150.6 92 81.5
PGR004G1736 Punica granatum HOM05D002996 ORTHO05D003536 7.0e-35 150.6 89 85.4
TPR.G27148 Trifolium pratense HOM05D002996 ORTHO05D003536 7.0e-35 150.6 92 82.6
Duzib133G0038 Durio zibethinus HOM05D002996 ORTHO05D003536 9.1e-35 150.2 92 82.6
Gohir.A11G162100 Gossypium hirsutum HOM05D002996 ORTHO05D003536 9.1e-35 150.2 92 81.5
SGA_v2.0_scaffold13G06389 Striga asiatica HOM05D002996 ORTHO05D003536 9.1e-35 150.2 92 81.5
A06p26370 Brassica napus HOM05D002996 ORTHO05D003536 1.2e-34 149.8 92 78.3
BNapus_Darmor_BZH_scaffold_78p00120 Brassica napus HOM05D002996 ORTHO05D003536 1.2e-34 149.8 92 78.3
BraA01t04583Z Brassica rapa HOM05D002996 ORTHO05D003536 1.2e-34 149.8 92 78.3
Lsat_1_v5_gn_4_154680 Lactuca sativa HOM05D002996 ORTHO05D003536 1.2e-34 149.8 92 81.5
Medtr3g067690 Medicago truncatula HOM05D002996 ORTHO05D003536 1.2e-34 149.8 92 81.5
Solyc03g043660.3 Solanum lycopersicum HOM05D002996 ORTHO05D003536 1.6e-34 149.4 92 80.4
Sopen03g007520 Solanum pennellii HOM05D002996 ORTHO05D003536 1.6e-34 149.4 92 80.4
Dinv19011 Davidia involucrata HOM05D002996 ORTHO05D003536 2.0e-34 149.1 92 80.4
Aa31LG5G13900 Aethionema arabicum HOM05D002996 ORTHO05D003536 3.5e-34 148.3 92 77.2
Gohir.D11G168300 Gossypium hirsutum HOM05D002996 ORTHO05D003536 4.5e-34 147.9 92 80.4
Gorai.007G179800 Gossypium raimondii HOM05D002996 ORTHO05D003536 4.5e-34 147.9 92 80.4
Nitab4.5_0002366g0060 Nicotiana tabacum HOM05D002996 ORTHO05D003536 7.7e-34 147.1 94 79.8
CAN.G11.11 Capsicum annuum HOM05D002996 ORTHO05D003536 1.3e-33 146.4 93 80.6
PSO017G4487 Papaver somniferum HOM05D002996 ORTHO05D003536 1.3e-33 146.4 92 80.4
PSO478G4946 Papaver somniferum HOM05D002996 ORTHO05D003536 1.3e-33 146.4 92 80.4
BcaC05g30278 Brassica carinata HOM05D002996 ORTHO05D003536 1.7e-33 146.0 90 76.7
Eucgr.F02825 Eucalyptus grandis HOM05D002996 ORTHO05D003536 2.2e-33 145.6 89 79.8
HanXRQChr09g0262271 Helianthus annuus HOM05D002996 ORTHO05D003536 2.2e-33 145.6 92 78.3
Atru.chr1.1814 Acer truncatum HOM05D002996 ORTHO05D003536 3.8e-33 144.8 90 81.1
ECA232G3169 Erigeron canadensis HOM05D002996 ORTHO05D003536 6.5e-33 144.1 95 76.8
Peaxi162Scf00118g00223 Petunia axillaris HOM05D002996 ORTHO05D003536 6.5e-33 144.1 92 79.3
ECA238G4747 Erigeron canadensis HOM05D002996 ORTHO05D003536 8.5e-33 143.7 82 86.6
Mapoly0003s0272 Marchantia polymorpha HOM05D002996 ORTHO05D003536 8.5e-33 143.7 95 75.8
Rhsim10G0079400 Rhododendron simsii HOM05D002996 ORTHO05D003536 1.2e-31 139.8 82 81.7
SEGI_40820 Sequoiadendron giganteum HOM05D002996 ORTHO05D003536 2.7e-31 138.7 90 75.6
Migut.H00264 Erythranthe guttata HOM05D002996 ORTHO05D003536 6.1e-31 137.5 91 74.7
Medtr3g067695 Medicago truncatula HOM05D002996 ORTHO05D003536 8.0e-31 137.1 90 77.8
Rhsim10G0079500 Rhododendron simsii HOM05D002996 ORTHO05D003536 1.0e-30 136.7 82 80.5
Peaxi162Scf00003g00013 Petunia axillaris HOM05D002996 ORTHO05D003536 6.8e-30 134.0 83 83.1
vmacro05508 Vaccinium macrocarpon HOM05D002996 ORTHO05D003536 5.7e-29 131.0 92 69.6
Pp3c1_28480 Physcomitrium patens HOM05D002996 ORTHO05D003536 1.3e-28 129.8 85 76.5
PSO339G5742 Papaver somniferum HOM05D002996 ORTHO05D003536 3.7e-28 128.3 85 74.1
Manes.01G116000 Manihot esculenta HOM05D002996 ORTHO05D003536 4.8e-28 127.9 91 67.0
PSO170G1396 Papaver somniferum HOM05D002996 ORTHO05D003536 1.1e-27 126.7 82 74.4
SMO361G0084 Selaginella moellendorffii HOM05D002996 ORTHO05D003536 1.1e-27 126.7 85 74.1
HanXRQChr09g0262281 Helianthus annuus HOM05D002996 ORTHO05D003536 3.1e-27 125.2 72 83.3
FAN04G0036 Fragaria x ananassa HOM05D002996 ORTHO05D003536 4.1e-27 124.8 76 84.2
PSO407G0242 Papaver somniferum HOM05D002996 ORTHO05D003536 5.4e-27 124.4 82 73.2
Sabra04G0059000 Salix brachista HOM05D002996 ORTHO05D003536 7.0e-27 124.0 80 75.0
Potri.004G088600 Populus trichocarpa HOM05D002996 ORTHO05D003536 2.7e-26 122.1 80 73.8
Cre03.g180650 Chlamydomonas reinhardtii HOM05D002996 ORTHO05D003536 1.7e-25 119.4 80 68.8
PSO407G0207 Papaver somniferum HOM05D002996 ORTHO05D003536 5.0e-25 117.9 82 68.3
Potri.004G088700 Populus trichocarpa HOM05D002996 ORTHO05D003536 1.6e-23 112.8 92 63.0
GSVIVG01037949001 Vitis vinifera HOM05D002996 ORTHO05D003536 1.6e-23 112.8 88 68.2
Zm00001eb064060 Zea mays HOM05D002996 ORTHO05D003536 1.0e-22 110.2 57 89.5
Lj2C435G4 Lonicera japonica HOM05D002996 ORTHO05D003536 2.3e-22 109.0 69 81.2
Sabra04G0059100 Salix brachista HOM05D002996 ORTHO05D003536 5.2e-22 107.8 81 65.4
Zm00001eb218380 Zea mays HOM05D002996 ORTHO05D003536 5.2e-22 107.8 57 87.7
TPR.G27497 Trifolium pratense HOM05D002996 ORTHO05D003536 6.8e-22 107.5 76 72.4
Nitab4.5_0000465g0040 Nicotiana tabacum HOM05D002996 ORTHO05D003536 2.0e-21 105.9 71 80.3
Zm00001eb252510 Zea mays HOM05D002996 ORTHO05D003536 4.4e-21 104.8 80 68.8
CDE10G1224 Ceratophyllum demersum HOM05D002996 ORTHO05D003536 5.7e-21 104.4 51 96.1
MCO10G011 Micromonas commoda HOM05D002996 ORTHO05D003536 2.8e-20 102.1 74 64.9
vmacro05504 Vaccinium macrocarpon HOM05D002996 ORTHO05D003536 1.6e-18 96.3 69 71.0
vmacro05511 Vaccinium macrocarpon HOM05D002996 ORTHO05D003536 2.3e-14 82.4 130 41.5
Cfa025176 Carpinus fangiana HOM05D002996 ORTHO05D003536 6.8e-14 80.9 74 54.1
Manes.04G143783 Manihot esculenta HOM05D002996 ORTHO05D003536 4.9e-12 74.7 65 63.1
SalBow1G7030 Salvia bowleyana HOM05D002996 ORTHO05D003536 1.1e-11 73.6 92 47.8
PGSC0003DMG400014175 Solanum tuberosum HOM05D002996 ORTHO05D003536 5.6e-08 61.2 41 75.6
Solyc01g056910.1 Solanum lycopersicum HOM05D002996 ORTHO05D003536 6.8e-06 54.3 41 65.9


User provided reference genes

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