Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE11G1073 Ceratophyllum demersum HOM05D005359 ORTHO05D006431 3.8e-145 518.1 251 100.0
TAR376G0200 Trochodendron aralioides HOM05D005359 ORTHO05D006431 1.6e-82 310.1 317 48.3
Nn5g28206 Nelumbo nucifera HOM05D005359 ORTHO05D006431 1.8e-81 306.6 317 47.3
MBI06_g20718_MAGBIO Magnolia biondii HOM05D005359 ORTHO05D006431 1.4e-78 297.0 317 46.4
Manes.07G015400 Manihot esculenta HOM05D005359 ORTHO05D006431 2.4e-78 296.2 317 46.1
TWI14G1253 Tripterygium wilfordii HOM05D005359 ORTHO05D006431 3.1e-78 295.8 317 45.7
TWI23G0911 Tripterygium wilfordii HOM05D005359 ORTHO05D006431 3.1e-78 295.8 317 45.4
TAR628G1654 Trochodendron aralioides HOM05D005359 ORTHO05D006431 3.1e-78 295.8 317 45.1
Ciclev10001293m.g Citrus clementina HOM05D005359 ORTHO05D006431 6.9e-78 294.7 317 46.7
Dinv19364 Davidia involucrata HOM05D005359 ORTHO05D006431 7.6e-77 291.2 317 45.4
CSS0002632 Camellia sinensis var. sinensis HOM05D005359 ORTHO05D006431 1.3e-76 290.4 317 45.7
COL.COLO4_17869 Corchorus olitorius HOM05D005359 ORTHO05D006431 2.2e-76 289.7 317 45.7
Thecc.02G038700 Theobroma cacao HOM05D005359 ORTHO05D006431 4.9e-76 288.5 317 45.4
Duzib052G1228 Durio zibethinus HOM05D005359 ORTHO05D006431 6.5e-76 288.1 317 46.1
CSS0043414 Camellia sinensis var. sinensis HOM05D005359 ORTHO05D006431 1.4e-75 287.0 317 44.8
PGR042G0198 Punica granatum HOM05D005359 ORTHO05D006431 1.4e-75 287.0 317 45.7
Gohir.D01G169300 Gossypium hirsutum HOM05D005359 ORTHO05D006431 2.5e-75 286.2 317 45.4
Gorai.002G210900 Gossypium raimondii HOM05D005359 ORTHO05D006431 2.5e-75 286.2 317 45.4
Cc02_g22460 Coffea canephora HOM05D005359 ORTHO05D006431 3.2e-75 285.8 317 44.8
Gohir.A01G178400 Gossypium hirsutum HOM05D005359 ORTHO05D006431 3.2e-75 285.8 317 45.4
Aqoxy5G02275 Aquilegia oxysepala HOM05D005359 ORTHO05D006431 9.3e-75 284.3 317 45.4
Prupe.1G568000 Prunus persica HOM05D005359 ORTHO05D006431 2.7e-74 282.7 317 45.7
DCAR_013987 Daucus carota HOM05D005359 ORTHO05D006431 3.5e-74 282.3 317 43.5
Lj5A252T45 Lonicera japonica HOM05D005359 ORTHO05D006431 3.5e-74 282.3 317 45.1
Dinv24279 Davidia involucrata HOM05D005359 ORTHO05D006431 4.6e-74 282.0 317 44.2
Sabra01G0162800 Salix brachista HOM05D005359 ORTHO05D006431 7.9e-74 281.2 317 43.8
Phvul.002G250300 Phaseolus vulgaris HOM05D005359 ORTHO05D006431 1.0e-73 280.8 317 44.2
QL08p043348 Quercus lobata HOM05D005359 ORTHO05D006431 1.0e-73 280.8 302 45.7
Sabra03G0010900 Salix brachista HOM05D005359 ORTHO05D006431 1.8e-73 280.0 317 44.2
CiPaw.05G044000 Carya illinoinensis HOM05D005359 ORTHO05D006431 2.3e-73 279.6 317 43.2
MD15G1422700 Malus domestica HOM05D005359 ORTHO05D006431 3.0e-73 279.3 317 44.2
CANSAT11G2649 Cannabis sativa HOM05D005359 ORTHO05D006431 3.9e-73 278.9 317 43.8
Glyma.08G185900 Glycine max HOM05D005359 ORTHO05D006431 3.9e-73 278.9 317 44.2
Potri.003G019400 Populus trichocarpa HOM05D005359 ORTHO05D006431 5.1e-73 278.5 317 44.2
Gorai.008G042100 Gossypium raimondii HOM05D005359 ORTHO05D006431 8.7e-73 277.7 317 44.8
vmacro01763 Vaccinium macrocarpon HOM05D005359 ORTHO05D006431 1.1e-72 277.3 303 44.6
CANSAT11G0924 Cannabis sativa HOM05D005359 ORTHO05D006431 1.5e-72 276.9 317 43.2
Lsat_1_v5_gn_5_109981 Lactuca sativa HOM05D005359 ORTHO05D006431 1.5e-72 276.9 318 43.4
AUR62007773 Chenopodium quinoa HOM05D005359 ORTHO05D006431 1.9e-72 276.6 319 44.8
Gohir.A12G031900 Gossypium hirsutum HOM05D005359 ORTHO05D006431 1.9e-72 276.6 317 44.2
Lj6g0011599 Lotus japonicus HOM05D005359 ORTHO05D006431 1.9e-72 276.6 317 43.5
RcHm_v2.0_Chr7g0222501 Rosa chinensis HOM05D005359 ORTHO05D006431 1.9e-72 276.6 317 45.4
MD08G1228700 Malus domestica HOM05D005359 ORTHO05D006431 2.5e-72 276.2 317 45.1
Cpa.g.sc113.63 Carica papaya HOM05D005359 ORTHO05D006431 3.3e-72 275.8 317 43.8
Potri.001G210800 Populus trichocarpa HOM05D005359 ORTHO05D006431 3.3e-72 275.8 317 43.8
Glyma.08G127900 Glycine max HOM05D005359 ORTHO05D006431 4.3e-72 275.4 303 44.9
Glyma.15G046900 Glycine max HOM05D005359 ORTHO05D006431 4.3e-72 275.4 317 43.5
Psat2g122240 Pisum sativum HOM05D005359 ORTHO05D006431 5.7e-72 275.0 317 44.5
AUR62002965 Chenopodium quinoa HOM05D005359 ORTHO05D006431 7.4e-72 274.6 319 43.9
CiPaw.06G147600 Carya illinoinensis HOM05D005359 ORTHO05D006431 9.6e-72 274.2 317 42.6
ATR0193G009 Amborella trichopoda HOM05D005359 ORTHO05D006431 1.3e-71 273.9 317 45.1
DCAR_031890 Daucus carota HOM05D005359 ORTHO05D006431 1.3e-71 273.9 313 44.7
Eucgr.I02722 Eucalyptus grandis HOM05D005359 ORTHO05D006431 1.6e-71 273.5 317 42.9
Gohir.D12G040400 Gossypium hirsutum HOM05D005359 ORTHO05D006431 2.8e-71 272.7 317 44.2
Rhsim11G0129700 Rhododendron simsii HOM05D005359 ORTHO05D006431 2.8e-71 272.7 317 43.2
Peaxi162Scf00011g00352 Petunia axillaris HOM05D005359 ORTHO05D006431 3.7e-71 272.3 316 44.0
arahy.Tifrunner.gnm1.ann1.8TZ9EP Arachis hypogaea HOM05D005359 ORTHO05D006431 4.8e-71 271.9 317 43.5
arahy.Tifrunner.gnm1.ann1.HK0KDN Arachis hypogaea HOM05D005359 ORTHO05D006431 6.2e-71 271.6 317 43.5
Oeu008891.1 Olea europaea HOM05D005359 ORTHO05D006431 6.2e-71 271.6 303 45.2
VMungo0251G3193 Vigna mungo HOM05D005359 ORTHO05D006431 1.4e-70 270.4 317 43.2
Haze_01666 Corylus avellana HOM05D005359 ORTHO05D006431 3.1e-70 269.2 303 43.6
HanXRQChr06g0169581 Helianthus annuus HOM05D005359 ORTHO05D006431 9.0e-70 267.7 317 41.3
Medtr2g007220 Medicago truncatula HOM05D005359 ORTHO05D006431 1.2e-69 267.3 317 42.6
VMungo0540G0616 Vigna mungo HOM05D005359 ORTHO05D006431 1.5e-69 266.9 303 43.2
Glyma.05G169600 Glycine max HOM05D005359 ORTHO05D006431 2.0e-69 266.5 317 43.2
MSTRG.5231 Avicennia marina HOM05D005359 ORTHO05D006431 2.6e-69 266.2 303 44.2
Lj4g0002358 Lotus japonicus HOM05D005359 ORTHO05D006431 2.6e-69 266.2 305 43.0
Cfa005525 Carpinus fangiana HOM05D005359 ORTHO05D006431 3.4e-69 265.8 303 42.9
Hund05788 Selenicereus undatus HOM05D005359 ORTHO05D006431 3.4e-69 265.8 318 42.5
THA.LOC104819321 Tarenaya hassleriana HOM05D005359 ORTHO05D006431 3.4e-69 265.8 303 45.5
EL10Ac6g14556 Beta vulgaris HOM05D005359 ORTHO05D006431 4.5e-69 265.4 318 43.7
Nitab4.5_0007420g0030 Nicotiana tabacum HOM05D005359 ORTHO05D006431 5.8e-69 265.0 316 43.7
Lalb_Chr20g0123431 Lupinus albus HOM05D005359 ORTHO05D006431 1.7e-68 263.5 317 42.0
SalBow6G6401 Salvia bowleyana HOM05D005359 ORTHO05D006431 1.7e-68 263.5 317 43.5
Ca_00078_v3 Cicer arietinum L. HOM05D005359 ORTHO05D006431 2.2e-68 263.1 317 42.0
Phvul.006G214300 Phaseolus vulgaris HOM05D005359 ORTHO05D006431 2.2e-68 263.1 317 42.0
FvH4_5g29550 Fragaria vesca HOM05D005359 ORTHO05D006431 2.9e-68 262.7 303 44.9
FAN08G1144 Fragaria x ananassa HOM05D005359 ORTHO05D006431 2.9e-68 262.7 303 44.6
FAN18G3183 Fragaria x ananassa HOM05D005359 ORTHO05D006431 2.9e-68 262.7 303 44.9
TPR.G2126 Trifolium pratense HOM05D005359 ORTHO05D006431 1.1e-67 260.8 317 42.0
ECA234G2063 Erigeron canadensis HOM05D005359 ORTHO05D006431 1.9e-67 260.0 317 41.6
HanXRQChr10g0289981 Helianthus annuus HOM05D005359 ORTHO05D006431 7.2e-67 258.1 317 39.4
Aa31LG1G4050 Aethionema arabicum HOM05D005359 ORTHO05D006431 1.6e-66 256.9 317 42.0
THA.LOC104809588 Tarenaya hassleriana HOM05D005359 ORTHO05D006431 1.6e-66 256.9 303 43.2
Sed0010360 Sechium edule HOM05D005359 ORTHO05D006431 2.1e-66 256.5 317 41.3
Carub.0001s1033 Capsella rubella HOM05D005359 ORTHO05D006431 7.9e-66 254.6 316 41.5
CAN.G1577.14 Capsicum annuum HOM05D005359 ORTHO05D006431 1.0e-65 254.2 295 45.4
Sopen01g046670 Solanum pennellii HOM05D005359 ORTHO05D006431 1.0e-65 254.2 302 46.0
Sp1g09480 Schrenkiella parvula HOM05D005359 ORTHO05D006431 1.3e-65 253.8 316 41.1
FAN13G1157 Fragaria x ananassa HOM05D005359 ORTHO05D006431 2.3e-65 253.1 303 43.2
Thhalv10007703m.g Eutrema salsugineum HOM05D005359 ORTHO05D006431 3.0e-65 252.7 301 42.2
Solyc01g104230.4 Solanum lycopersicum HOM05D005359 ORTHO05D006431 3.0e-65 252.7 302 45.7
Migut.N01041 Erythranthe guttata HOM05D005359 ORTHO05D006431 3.9e-65 252.3 303 44.6
Sc16g0001650 Simmondsia chinensis HOM05D005359 ORTHO05D006431 3.9e-65 252.3 306 44.1
ClCG09G014240 Citrullus lanatus HOM05D005359 ORTHO05D006431 5.1e-65 251.9 317 41.0
CsaV3_6G037270 Cucumis sativus L. HOM05D005359 ORTHO05D006431 6.7e-65 251.5 317 41.6
Nitab4.5_0002245g0060 Nicotiana tabacum HOM05D005359 ORTHO05D006431 6.7e-65 251.5 285 44.9
HanXRQChr16g0514561 Helianthus annuus HOM05D005359 ORTHO05D006431 1.5e-64 250.4 317 39.7
AL1G21710 Arabidopsis lyrata HOM05D005359 ORTHO05D006431 1.9e-64 250.0 316 41.5
unitig_26.g9020 Utricularia gibba HOM05D005359 ORTHO05D006431 1.9e-64 250.0 317 41.6
AT1G10780 Arabidopsis thaliana HOM05D005359 ORTHO05D006431 4.3e-64 248.8 316 40.8
Os09g0454300 Oryza sativa ssp. japonica HOM05D005359 ORTHO05D006431 7.4e-64 248.1 301 41.5
CARHR011000 Cardamine hirsuta HOM05D005359 ORTHO05D006431 1.3e-63 247.3 316 41.1
SGA_v2.0_scaffold292G47368 Striga asiatica HOM05D005359 ORTHO05D006431 1.1e-62 244.2 302 42.7
PGSC0003DMG400023758 Solanum tuberosum HOM05D005359 ORTHO05D006431 3.1e-62 242.7 302 44.7
MELO3C014388.2 Cucumis melo HOM05D005359 ORTHO05D006431 1.2e-61 240.7 312 40.4
A09p64680 Brassica napus HOM05D005359 ORTHO05D006431 4.5e-61 238.8 316 39.2
BraA09t41824Z Brassica rapa HOM05D005359 ORTHO05D006431 4.5e-61 238.8 316 39.2
BolC8t52390H Brassica oleracea HOM05D005359 ORTHO05D006431 7.7e-61 238.0 316 39.2
C08p48500 Brassica napus HOM05D005359 ORTHO05D006431 1.7e-60 236.9 316 38.9
Lalb_Chr07g0185731 Lupinus albus HOM05D005359 ORTHO05D006431 2.1e-58 229.9 303 38.3
Thecc.02G038500 Theobroma cacao HOM05D005359 ORTHO05D006431 3.6e-58 229.2 282 42.9
Ah.03g138120 Amaranthus hybridus HOM05D005359 ORTHO05D006431 1.8e-57 226.9 298 40.9
ECA236G4790 Erigeron canadensis HOM05D005359 ORTHO05D006431 1.1e-56 224.2 274 40.5
GSVIVG01022967001 Vitis vinifera HOM05D005359 ORTHO05D006431 1.5e-56 223.8 303 40.3
Zm00001eb100430 Zea mays HOM05D005359 ORTHO05D006431 2.0e-56 223.4 286 39.5
Mapoly0113s0005 Marchantia polymorpha HOM05D005359 ORTHO05D006431 3.1e-54 216.1 308 36.7
Hma1.2p1_0217F.1_g092010 Hydrangea macrophylla HOM05D005359 ORTHO05D006431 1.5e-53 213.8 259 42.9
Sed0018525 Sechium edule HOM05D005359 ORTHO05D006431 1.5e-53 213.8 317 36.3
Zm00001eb176520 Zea mays HOM05D005359 ORTHO05D006431 2.2e-52 209.9 301 38.9
Zm00001eb037840 Zea mays HOM05D005359 ORTHO05D006431 8.5e-52 208.0 301 38.2
Lsat_1_v5_gn_4_48740 Lactuca sativa HOM05D005359 ORTHO05D006431 8.8e-49 198.0 164 51.8
Oeu033126.1 Olea europaea HOM05D005359 ORTHO05D006431 1.4e-46 190.7 217 45.6
HPP92_010977 Vanilla planifolia HOM05D005359 ORTHO05D006431 5.5e-43 178.7 159 49.7
SMO169G0280 Selaginella moellendorffii HOM05D005359 ORTHO05D006431 6.7e-41 171.8 281 35.2
Os08g0469500 Oryza sativa ssp. japonica HOM05D005359 ORTHO05D006431 3.3e-40 169.5 303 34.0
Nn1g08733 Nelumbo nucifera HOM05D005359 ORTHO05D006431 1.3e-39 167.5 131 54.2
AagrBONN_evm.TU.Sc2ySwM_117.2184 Anthoceros agrestis HOM05D005359 ORTHO05D006431 1.8e-38 163.7 174 40.2
arahy.Tifrunner.gnm1.ann1.3FYK03 Arachis hypogaea HOM05D005359 ORTHO05D006431 2.7e-29 133.3 214 39.3
Dinv24276 Davidia involucrata HOM05D005359 ORTHO05D006431 3.5e-21 106.3 91 51.6
Atru.chr6.646 Acer truncatum HOM05D005359 ORTHO05D006431 7.3e-19 98.6 64 64.1
Oeu056678.1 Olea europaea HOM05D005359 ORTHO05D006431 7.3e-19 98.6 79 54.4
BcaC05g24954 Brassica carinata HOM05D005359 ORTHO05D006431 2.2e-15 87.0 107 43.0
MSTRG.27843 Avicennia marina HOM05D005359 ORTHO05D006431 5.9e-13 79.0 76 50.0
arahy.Tifrunner.gnm1.ann1.BYQ4G2 Arachis hypogaea HOM05D005359 ORTHO05D006431 8.6e-12 75.1 53 60.4
arahy.Tifrunner.gnm1.ann1.94J17Q Arachis hypogaea HOM05D005359 ORTHO05D006431 3.4e-08 63.2 39 66.7


User provided reference genes

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