Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE11G1036 Ceratophyllum demersum HOM05D004108 ORTHO05D004849 5.6e-69 264.2 140 100.0
CDE05G3574 Ceratophyllum demersum HOM05D004108 ORTHO05D004849 2.1e-55 219.2 143 84.6
MBI18_g38882_MAGBIO Magnolia biondii HOM05D004108 ORTHO05D004849 7.6e-26 120.9 135 50.4
ATR0568G230 Amborella trichopoda HOM05D004108 ORTHO05D004849 6.2e-20 101.3 134 39.6
Gorai.002G127100 Gossypium raimondii HOM05D004108 ORTHO05D004849 3.4e-18 95.5 141 41.1
Eucgr.F01582 Eucalyptus grandis HOM05D004108 ORTHO05D004849 7.6e-18 94.4 129 44.2
Gohir.D01G103300 Gossypium hirsutum HOM05D004108 ORTHO05D004849 1.0e-17 94.0 141 40.4
FvH4_2g39630 Fragaria vesca HOM05D004108 ORTHO05D004849 2.2e-17 92.8 152 38.2
Gohir.A01G114900 Gossypium hirsutum HOM05D004108 ORTHO05D004849 2.2e-17 92.8 141 40.4
Duzib093G0346 Durio zibethinus HOM05D004108 ORTHO05D004849 1.1e-16 90.5 143 37.1
Os03g0826800 Oryza sativa ssp. japonica HOM05D004108 ORTHO05D004849 1.9e-16 89.7 147 40.8
Manes.18G023000 Manihot esculenta HOM05D004108 ORTHO05D004849 2.5e-16 89.4 146 39.7
CDE06G1682 Ceratophyllum demersum HOM05D004108 ORTHO05D004849 3.2e-16 89.0 135 39.3
Thecc.08G029500 Theobroma cacao HOM05D004108 ORTHO05D004849 3.2e-16 89.0 139 36.7
CDE02G0765 Ceratophyllum demersum HOM05D004108 ORTHO05D004849 4.2e-16 88.6 137 38.0
PSO675G8146 Papaver somniferum HOM05D004108 ORTHO05D004849 5.5e-16 88.2 137 41.6
SGA_v2.0_scaffold326G48731 Striga asiatica HOM05D004108 ORTHO05D004849 5.5e-16 88.2 131 42.0
HPP92_010562 Vanilla planifolia HOM05D004108 ORTHO05D004849 5.5e-16 88.2 134 38.8
PGR083G0993 Punica granatum HOM05D004108 ORTHO05D004849 7.1e-16 87.8 138 42.0
CiPaw.15G080700 Carya illinoinensis HOM05D004108 ORTHO05D004849 9.3e-16 87.4 141 39.7
COL.COLO4_26289 Corchorus olitorius HOM05D004108 ORTHO05D004849 1.6e-15 86.7 139 37.4
QL02p009008 Quercus lobata HOM05D004108 ORTHO05D004849 2.7e-15 85.9 145 39.3
Aqoxy3G01079 Aquilegia oxysepala HOM05D004108 ORTHO05D004849 3.5e-15 85.5 128 39.1
PSO541G2330 Papaver somniferum HOM05D004108 ORTHO05D004849 3.5e-15 85.5 137 40.9
Sopen04g034130 Solanum pennellii HOM05D004108 ORTHO05D004849 3.5e-15 85.5 135 37.8
PGSC0003DMG400003688 Solanum tuberosum HOM05D004108 ORTHO05D004849 3.5e-15 85.5 135 37.8
FAN15G0289 Fragaria x ananassa HOM05D004108 ORTHO05D004849 4.6e-15 85.1 149 37.6
Ca_15505_v3 Cicer arietinum L. HOM05D004108 ORTHO05D004849 6.0e-15 84.7 135 40.0
AUR62003937 Chenopodium quinoa HOM05D004108 ORTHO05D004849 7.9e-15 84.3 139 38.1
AUR62014478 Chenopodium quinoa HOM05D004108 ORTHO05D004849 7.9e-15 84.3 139 38.1
Oeu007023.1 Olea europaea HOM05D004108 ORTHO05D004849 7.9e-15 84.3 144 39.6
Aqoxy3G01077 Aquilegia oxysepala HOM05D004108 ORTHO05D004849 1.0e-14 84.0 128 39.8
FAN27G1128 Fragaria x ananassa HOM05D004108 ORTHO05D004849 1.0e-14 84.0 149 37.6
Potri.002G034500 Populus trichocarpa HOM05D004108 ORTHO05D004849 1.0e-14 84.0 139 38.8
Sc15g0007040 Simmondsia chinensis HOM05D004108 ORTHO05D004849 1.0e-14 84.0 132 41.7
EL10Ac1g00610 Beta vulgaris HOM05D004108 ORTHO05D004849 1.3e-14 83.6 135 42.2
Sabra05G0176500 Salix brachista HOM05D004108 ORTHO05D004849 1.3e-14 83.6 143 38.5
Solyc04g080540.2 Solanum lycopersicum HOM05D004108 ORTHO05D004849 2.3e-14 82.8 135 37.0
Gorai.009G272400 Gossypium raimondii HOM05D004108 ORTHO05D004849 3.0e-14 82.4 132 40.9
MELO3C003817.2 Cucumis melo HOM05D004108 ORTHO05D004849 3.9e-14 82.0 141 40.4
Gohir.A05G192800 Gossypium hirsutum HOM05D004108 ORTHO05D004849 3.9e-14 82.0 137 38.0
Gohir.D05G196000 Gossypium hirsutum HOM05D004108 ORTHO05D004849 3.9e-14 82.0 137 38.0
Gorai.009G200900 Gossypium raimondii HOM05D004108 ORTHO05D004849 3.9e-14 82.0 137 38.0
Potri.005G228600 Populus trichocarpa HOM05D004108 ORTHO05D004849 3.9e-14 82.0 144 38.2
Prupe.1G377400 Prunus persica HOM05D004108 ORTHO05D004849 3.9e-14 82.0 144 36.8
VMungo0647G0771 Vigna mungo HOM05D004108 ORTHO05D004849 6.7e-14 81.3 136 36.8
FAN20G2373 Fragaria x ananassa HOM05D004108 ORTHO05D004849 8.7e-14 80.9 149 36.2
MD08G1029700 Malus domestica HOM05D004108 ORTHO05D004849 8.7e-14 80.9 133 37.6
Gohir.D05G260600 Gossypium hirsutum HOM05D004108 ORTHO05D004849 1.1e-13 80.5 129 40.3
Duzib116G0345 Durio zibethinus HOM05D004108 ORTHO05D004849 1.5e-13 80.1 136 36.0
Glyma.04G030900 Glycine max HOM05D004108 ORTHO05D004849 1.5e-13 80.1 131 37.4
Glyma.06G031000 Glycine max HOM05D004108 ORTHO05D004849 1.5e-13 80.1 131 37.4
Hund26890 Selenicereus undatus HOM05D004108 ORTHO05D004849 1.5e-13 80.1 131 38.9
Hund29908 Selenicereus undatus HOM05D004108 ORTHO05D004849 1.5e-13 80.1 131 38.9
Lalb_Chr08g0245901 Lupinus albus HOM05D004108 ORTHO05D004849 1.9e-13 79.7 135 37.8
Medtr3g111970 Medicago truncatula HOM05D004108 ORTHO05D004849 1.9e-13 79.7 127 40.9
MSTRG.24284 Avicennia marina HOM05D004108 ORTHO05D004849 2.5e-13 79.3 134 40.3
CsaV3_3G045320 Cucumis sativus L. HOM05D004108 ORTHO05D004849 2.5e-13 79.3 141 39.7
Gohir.A05G258800 Gossypium hirsutum HOM05D004108 ORTHO05D004849 2.5e-13 79.3 129 39.5
Cc10_g02670 Coffea canephora HOM05D004108 ORTHO05D004849 3.3e-13 79.0 145 39.3
TAR381G0780 Trochodendron aralioides HOM05D004108 ORTHO05D004849 4.3e-13 78.6 114 39.5
Eucgr.F01583 Eucalyptus grandis HOM05D004108 ORTHO05D004849 5.7e-13 78.2 157 36.9
Lj1g0012803 Lotus japonicus HOM05D004108 ORTHO05D004849 5.7e-13 78.2 133 37.6
Ciclev10002766m.g Citrus clementina HOM05D004108 ORTHO05D004849 7.4e-13 77.8 147 34.7
Nitab4.5_0002224g0100 Nicotiana tabacum HOM05D004108 ORTHO05D004849 7.4e-13 77.8 132 36.4
Phvul.001G013200 Phaseolus vulgaris HOM05D004108 ORTHO05D004849 7.4e-13 77.8 136 36.8
Actinidia22531 Actinidia chinensis HOM05D004108 ORTHO05D004849 9.6e-13 77.4 142 38.7
CSS0043508 Camellia sinensis var. sinensis HOM05D004108 ORTHO05D004849 9.6e-13 77.4 147 35.4
Rhsim06G0031200 Rhododendron simsii HOM05D004108 ORTHO05D004849 9.6e-13 77.4 139 38.1
SEGI_02312 Sequoiadendron giganteum HOM05D004108 ORTHO05D004849 9.6e-13 77.4 145 35.2
Ca_13362_v3 Cicer arietinum L. HOM05D004108 ORTHO05D004849 1.3e-12 77.0 132 34.8
Medtr1g022395 Medicago truncatula HOM05D004108 ORTHO05D004849 1.6e-12 76.6 131 35.1
VMungo1309G0255 Vigna mungo HOM05D004108 ORTHO05D004849 1.6e-12 76.6 141 36.9
Atru.chr13.446 Acer truncatum HOM05D004108 ORTHO05D004849 2.1e-12 76.3 141 33.3
Aqoxy5G01593 Aquilegia oxysepala HOM05D004108 ORTHO05D004849 2.1e-12 76.3 147 32.7
Cfa018174 Carpinus fangiana HOM05D004108 ORTHO05D004849 2.8e-12 75.9 135 37.0
CSS0044578 Camellia sinensis var. sinensis HOM05D004108 ORTHO05D004849 4.8e-12 75.1 141 36.2
Sed0024175 Sechium edule HOM05D004108 ORTHO05D004849 4.8e-12 75.1 115 40.9
MSTRG.22304 Avicennia marina HOM05D004108 ORTHO05D004849 6.3e-12 74.7 142 38.7
CANSAT25G0460 Cannabis sativa HOM05D004108 ORTHO05D004849 6.3e-12 74.7 138 37.0
Glyma.06G031100 Glycine max HOM05D004108 ORTHO05D004849 6.3e-12 74.7 127 38.6
Sed0010517 Sechium edule HOM05D004108 ORTHO05D004849 6.3e-12 74.7 130 36.9
TPR.G20143 Trifolium pratense HOM05D004108 ORTHO05D004849 6.3e-12 74.7 135 34.8
GSVIVG01009730001 Vitis vinifera HOM05D004108 ORTHO05D004849 6.3e-12 74.7 136 33.8
DCAR_019539 Daucus carota HOM05D001676 ORTHO05D001539 8.2e-12 74.3 135 39.3
Glyma.14G073200 Glycine max HOM05D004108 ORTHO05D004849 8.2e-12 74.3 134 35.1
Migut.N00486 Erythranthe guttata HOM05D004108 ORTHO05D004849 1.4e-11 73.6 127 38.6
Glyma.17G251800 Glycine max HOM05D004108 ORTHO05D004849 1.8e-11 73.2 136 33.8
ClCG08G014950 Citrullus lanatus HOM05D004108 ORTHO05D004849 2.4e-11 72.8 137 37.2
Hma1.2p1_0203F.1_g086230 Hydrangea macrophylla HOM05D004108 ORTHO05D004849 5.3e-11 71.6 136 36.8
Rhsim07G0240700 Rhododendron simsii HOM05D004108 ORTHO05D004849 5.3e-11 71.6 132 36.4
RhsimUnG0051600 Rhododendron simsii HOM05D004108 ORTHO05D004849 5.3e-11 71.6 132 36.4
Sabra02G0027700 Salix brachista HOM05D004108 ORTHO05D004849 5.3e-11 71.6 140 34.3
THA.LOC104811375 Tarenaya hassleriana HOM05D004108 ORTHO05D004849 5.3e-11 71.6 139 37.4
Lsat_1_v5_gn_4_117601 Lactuca sativa HOM05D004108 ORTHO05D004849 6.9e-11 71.2 127 36.2
Lj5g0010725 Lotus japonicus HOM05D004108 ORTHO05D004849 6.9e-11 71.2 135 34.1
Psat5g012160 Pisum sativum HOM05D004108 ORTHO05D004849 6.9e-11 71.2 131 35.9
Psat6g008240 Pisum sativum HOM05D004108 ORTHO05D004849 6.9e-11 71.2 140 35.7
Lsat_1_v5_gn_5_27881 Lactuca sativa HOM05D004108 ORTHO05D004849 9.0e-11 70.9 138 34.8
RcHm_v2.0_Chr6g0301271 Rosa chinensis HOM05D004108 ORTHO05D004849 9.0e-11 70.9 147 32.0
MBI10_g18267_MAGBIO Magnolia biondii HOM05D004108 ORTHO05D004849 1.2e-10 70.5 120 37.5
TWI56G1092 Tripterygium wilfordii HOM05D004108 ORTHO05D004849 1.5e-10 70.1 138 34.1
HPP92_003110 Vanilla planifolia HOM05D004108 ORTHO05D004849 1.5e-10 70.1 137 29.2
CARHR020100 Cardamine hirsuta HOM05D004108 ORTHO05D004849 2.0e-10 69.7 130 39.2
MELO3C010952.2 Cucumis melo HOM05D004108 ORTHO05D004849 2.0e-10 69.7 136 35.3
SEGI_15325 Sequoiadendron giganteum HOM05D004108 ORTHO05D004849 2.0e-10 69.7 145 31.7
Sp1g17400 Schrenkiella parvula HOM05D004108 ORTHO05D004849 3.4e-10 68.9 130 40.0
Haze_17929 Corylus avellana HOM05D004108 ORTHO05D004849 4.5e-10 68.6 117 37.6
CsaV3_2G028830 Cucumis sativus L. HOM05D004108 ORTHO05D004849 4.5e-10 68.6 140 37.9
ECA232G2533 Erigeron canadensis HOM05D004108 ORTHO05D004849 4.5e-10 68.6 128 35.2
arahy.Tifrunner.gnm1.ann1.9Q97AW Arachis hypogaea HOM05D004108 ORTHO05D004849 7.6e-10 67.8 135 40.0
Carub.0001s1910 Capsella rubella HOM05D004108 ORTHO05D004849 7.6e-10 67.8 130 37.7
HanXRQChr05g0156841 Helianthus annuus HOM05D004108 ORTHO05D004849 1.0e-09 67.4 138 34.1
AagrBONN_evm.TU.Sc2ySwM_344.1816 Anthoceros agrestis HOM05D004108 ORTHO05D004849 1.7e-09 66.6 140 35.0
HanXRQChr16g0501561 Helianthus annuus HOM05D004108 ORTHO05D004849 1.7e-09 66.6 127 35.4
arahy.Tifrunner.gnm1.ann1.FG8SZ8 Arachis hypogaea HOM05D004108 ORTHO05D004849 2.2e-09 66.2 135 34.1
ECA246G2053 Erigeron canadensis HOM05D004108 ORTHO05D004849 2.2e-09 66.2 150 30.0
Pp3c16_7660 Physcomitrium patens HOM05D004108 ORTHO05D004849 2.9e-09 65.9 128 32.8
Thhalv10009139m.g Eutrema salsugineum HOM05D004108 ORTHO05D004849 5.0e-09 65.1 130 37.7
Phvul.009G058900 Phaseolus vulgaris HOM05D004108 ORTHO05D004849 6.5e-09 64.7 144 34.7
SEGI_30411 Sequoiadendron giganteum HOM05D004108 ORTHO05D004849 6.5e-09 64.7 140 32.9
BcaC05g25839 Brassica carinata HOM05D004108 ORTHO05D004849 1.1e-08 63.9 130 38.5
C05p18030 Brassica napus HOM05D004108 ORTHO05D004849 1.1e-08 63.9 130 38.5
BolC5t30510H Brassica oleracea HOM05D004108 ORTHO05D004849 1.1e-08 63.9 130 38.5
A06p15710 Brassica napus HOM05D004108 ORTHO05D004849 1.4e-08 63.5 130 38.5
BraA06t24680Z Brassica rapa HOM05D004108 ORTHO05D004849 1.4e-08 63.5 130 38.5
AT1G19530 Arabidopsis thaliana HOM05D004108 ORTHO05D004849 3.2e-08 62.4 138 34.8
TPR.G12369 Trifolium pratense HOM05D004108 ORTHO05D004849 4.2e-08 62.0 140 32.1
BcaB07g31980 Brassica carinata HOM05D004108 ORTHO05D004849 5.5e-08 61.6 130 37.7
CANSAT25G1850 Cannabis sativa HOM05D004108 ORTHO05D004849 5.5e-08 61.6 149 34.2
Lalb_Chr14g0369381 Lupinus albus HOM05D004108 ORTHO05D004849 9.3e-08 60.8 140 34.3
Phvul.009G058800 Phaseolus vulgaris HOM05D004108 ORTHO05D004849 1.6e-07 60.1 129 34.1
Aa31LG7G4180 Aethionema arabicum HOM05D004108 ORTHO05D004849 2.1e-07 59.7 135 35.6
DCAR_020978 Daucus carota HOM05D004108 ORTHO05D004849 2.7e-07 59.3 111 36.0
Rhsim06G0031500 Rhododendron simsii HOM05D004108 ORTHO05D004849 2.7e-07 59.3 116 35.3
Mapoly0212s0007 Marchantia polymorpha HOM05D004108 ORTHO05D004849 3.6e-07 58.9 141 31.2
AL1G32280 Arabidopsis lyrata HOM05D004108 ORTHO05D004849 4.6e-07 58.5 131 36.6
Cpa.g.sc31.39 Carica papaya HOM05D004108 ORTHO05D004849 7.9e-07 57.8 109 35.8
Pp3c20_22930 Physcomitrium patens HOM05D004108 ORTHO05D004849 7.9e-07 57.8 137 33.6
unitig_899.g15617 Utricularia gibba HOM05D004108 ORTHO05D004849 7.9e-07 57.8 140 30.7
Mapoly0203s0009 Marchantia polymorpha HOM05D004108 ORTHO05D004849 1.0e-06 57.4 126 31.0
Actinidia38001 Actinidia chinensis HOM05D004108 ORTHO05D004849 1.8e-06 56.6 56 51.8
Mapoly0212s0008 Marchantia polymorpha HOM05D004108 ORTHO05D004849 2.3e-06 56.2 133 29.3
SMO348G0043 Selaginella moellendorffii HOM05D004108 ORTHO05D004849 5.1e-06 55.1 155 30.3
Mapoly0085s0006 Marchantia polymorpha HOM05D004108 ORTHO05D004849 8.7e-06 54.3 148 29.1


User provided reference genes

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