Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE11G0903 Ceratophyllum demersum HOM05D004084 ORTHO05D004662 1.7e-96 355.9 174 100.0
CDE11G0877 Ceratophyllum demersum HOM05D004084 ORTHO05D004662 1.5e-68 263.1 146 91.8
Thecc.09G249200 Theobroma cacao HOM05D004084 ORTHO05D004662 4.8e-38 161.8 154 52.6
Sc06g0004680 Simmondsia chinensis HOM05D004084 ORTHO05D004662 1.6e-36 156.8 141 59.6
DCAR_023764 Daucus carota HOM05D000857 ORTHO05D004662 2.0e-36 156.4 140 55.7
Cfa009849 Carpinus fangiana HOM05D004084 ORTHO05D004662 2.7e-36 156.0 139 56.1
Haze_23226 Corylus avellana HOM05D004084 ORTHO05D004662 3.5e-36 155.6 140 55.0
MSTRG.17633 Avicennia marina HOM05D004084 ORTHO05D004662 4.5e-36 155.2 133 58.6
Actinidia06961 Actinidia chinensis HOM05D004084 ORTHO05D004662 5.9e-36 154.8 136 59.6
CDE11G0350 Ceratophyllum demersum HOM05D004084 ORTHO05D004662 3.8e-35 152.1 97 82.5
Oeu025904.1 Olea europaea HOM05D004084 ORTHO05D004662 5.0e-35 151.8 151 53.0
Dinv05100 Davidia involucrata HOM05D004084 ORTHO05D004662 1.1e-34 150.6 137 56.9
VMungo0540G1882 Vigna mungo HOM05D004084 ORTHO05D004662 1.1e-34 150.6 155 54.2
Manes.02G139800 Manihot esculenta HOM05D004084 ORTHO05D004662 1.5e-34 150.2 156 51.9
Phvul.006G030700 Phaseolus vulgaris HOM05D004084 ORTHO05D004662 1.5e-34 150.2 152 53.3
Zm00001eb140640 Zea mays HOM05D004084 ORTHO05D004662 1.5e-34 150.2 121 62.8
ClCG02G022880 Citrullus lanatus HOM05D004084 ORTHO05D004662 1.9e-34 149.8 148 50.7
TWI75G0849 Tripterygium wilfordii HOM05D004084 ORTHO05D004662 2.5e-34 149.4 136 55.1
Ciclev10016417m.g Citrus clementina HOM05D004084 ORTHO05D004662 4.2e-34 148.7 154 51.9
MSTRG.17516 Avicennia marina HOM05D004084 ORTHO05D004662 5.5e-34 148.3 133 56.4
Sed0020433 Sechium edule HOM05D004084 ORTHO05D004662 5.5e-34 148.3 155 51.0
TAR623G1229 Trochodendron aralioides HOM05D004084 ORTHO05D004662 7.2e-34 147.9 157 47.8
Nitab4.5_0001500g0060 Nicotiana tabacum HOM05D001938 ORTHO05D004662 9.4e-34 147.5 137 54.0
Os01g0954400 Oryza sativa ssp. japonica HOM05D004084 ORTHO05D004662 9.4e-34 147.5 145 53.8
Dinv36171 Davidia involucrata HOM05D004084 ORTHO05D004662 2.1e-33 146.4 137 55.5
Psat5g181240 Pisum sativum HOM05D004084 ORTHO05D004662 2.1e-33 146.4 141 53.2
Rhsim13G0210600 Rhododendron simsii HOM05D004084 ORTHO05D004662 2.1e-33 146.4 138 55.1
PGSC0003DMG400009461 Solanum tuberosum HOM05D004084 ORTHO05D004662 2.1e-33 146.4 145 51.7
Hma1.2p1_0129F.1_g060160 Hydrangea macrophylla HOM05D004084 ORTHO05D004662 2.7e-33 146.0 138 55.1
Lj1A284G15 Lonicera japonica HOM05D004084 ORTHO05D004662 2.7e-33 146.0 135 58.5
GSVIVG01037269001 Vitis vinifera HOM05D004084 ORTHO05D004662 2.7e-33 146.0 158 50.0
Glyma.20G037400 Glycine max HOM05D004084 ORTHO05D004662 4.7e-33 145.2 157 53.5
Eucgr.B03731 Eucalyptus grandis HOM05D004084 ORTHO05D004662 8.0e-33 144.4 137 56.2
PSO384G1598 Papaver somniferum HOM05D004084 ORTHO05D004662 8.0e-33 144.4 138 55.1
Ah.04g161980 Amaranthus hybridus HOM05D004084 ORTHO05D004662 1.0e-32 144.1 143 52.4
Nitab4.5_0000730g0060 Nicotiana tabacum HOM05D001938 ORTHO05D004662 1.0e-32 144.1 137 52.6
Potri.001G275900 Populus trichocarpa HOM05D004084 ORTHO05D004662 1.0e-32 144.1 156 48.7
TWI79G0099 Tripterygium wilfordii HOM05D004084 ORTHO05D004662 1.0e-32 144.1 149 51.7
CANSAT54G0855 Cannabis sativa HOM05D004084 ORTHO05D004662 1.4e-32 143.7 155 49.0
MSTRG.21348 Avicennia marina HOM05D004084 ORTHO05D004662 2.3e-32 142.9 137 54.0
Solyc11g064830.2 Solanum lycopersicum HOM05D004084 ORTHO05D004662 2.3e-32 142.9 138 53.6
FAN21G2250 Fragaria x ananassa HOM05D004084 ORTHO05D004662 3.0e-32 142.5 153 47.7
MBI13_g27798_MAGBIO Magnolia biondii HOM05D004084 ORTHO05D004662 3.0e-32 142.5 132 56.8
Sopen11g024490 Solanum pennellii HOM05D004084 ORTHO05D004662 3.0e-32 142.5 138 52.9
Atru.chr4.1902 Acer truncatum HOM05D004084 ORTHO05D004662 4.0e-32 142.1 158 49.4
PSO339G4433 Papaver somniferum HOM05D004084 ORTHO05D004662 4.0e-32 142.1 176 47.7
QL01p017232 Quercus lobata HOM05D004084 ORTHO05D004662 5.2e-32 141.7 140 55.0
Aa31LG3G14920 Aethionema arabicum HOM05D004084 ORTHO05D004662 6.8e-32 141.4 150 51.3
Duzib150G1594 Durio zibethinus HOM05D004084 ORTHO05D004662 6.8e-32 141.4 136 52.2
Nitab4.5_0012538g0010 Nicotiana tabacum HOM05D004084 ORTHO05D004662 6.8e-32 141.4 137 53.3
SGA_v2.0_scaffold29G12252 Striga asiatica HOM05D004084 ORTHO05D004662 1.2e-31 140.6 119 60.5
ATR0680G173 Amborella trichopoda HOM05D004084 ORTHO05D004662 1.5e-31 140.2 157 49.0
Nitab4.5_0000718g0220 Nicotiana tabacum HOM05D004084 ORTHO05D004662 1.5e-31 140.2 137 53.3
Potri.009G070600 Populus trichocarpa HOM05D004084 ORTHO05D004662 1.5e-31 140.2 158 48.7
PGR119G1682 Punica granatum HOM05D004084 ORTHO05D004662 1.5e-31 140.2 142 54.2
PGR123G0005 Punica granatum HOM05D004084 ORTHO05D004662 1.5e-31 140.2 142 54.2
COL.COLO4_35673 Corchorus olitorius HOM05D004084 ORTHO05D004662 2.0e-31 139.8 154 47.4
Prupe.4G267100 Prunus persica HOM05D004084 ORTHO05D004662 2.0e-31 139.8 153 47.7
EL10Ac4g10147 Beta vulgaris HOM05D004084 ORTHO05D004662 2.6e-31 139.4 146 47.9
PGSC0003DMG400022698 Solanum tuberosum HOM05D004084 ORTHO05D004662 2.6e-31 139.4 136 53.7
Cc08_g06320 Coffea canephora HOM05D004084 ORTHO05D004662 4.4e-31 138.7 158 47.5
Duzib168G1105 Durio zibethinus HOM05D004084 ORTHO05D004662 5.7e-31 138.3 156 47.4
FAN25G0474 Fragaria x ananassa HOM05D004084 ORTHO05D004662 5.7e-31 138.3 153 47.1
FvH4_3g27900 Fragaria vesca HOM05D004084 ORTHO05D004662 9.8e-31 137.5 153 47.1
CiPaw.14G113600 Carya illinoinensis HOM05D004084 ORTHO05D004662 1.3e-30 137.1 160 48.1
Atru.chr3.2757 Acer truncatum HOM05D004084 ORTHO05D004662 1.7e-30 136.7 155 47.7
RcHm_v2.0_Chr5g0050631 Rosa chinensis HOM05D004084 ORTHO05D004662 1.7e-30 136.7 153 47.1
FAN16G3201 Fragaria x ananassa HOM05D004084 ORTHO05D004662 2.2e-30 136.3 153 46.4
Solyc01g008810.3 Solanum lycopersicum HOM05D004084 ORTHO05D004662 2.8e-30 136.0 143 51.7
Sopen01g004320 Solanum pennellii HOM05D004084 ORTHO05D004662 2.8e-30 136.0 143 51.7
Sp6g31330 Schrenkiella parvula HOM05D004084 ORTHO05D004662 3.7e-30 135.6 149 48.3
Thhalv10014482m.g Eutrema salsugineum HOM05D004084 ORTHO05D004662 6.3e-30 134.8 142 51.4
MD11G1185700 Malus domestica HOM05D004084 ORTHO05D004662 8.3e-30 134.4 154 47.4
Thhalv10014461m.g Eutrema salsugineum HOM05D004084 ORTHO05D004662 1.1e-29 134.0 121 55.4
Peaxi162Scf00032g02420 Petunia axillaris HOM05D004084 ORTHO05D004662 1.1e-29 134.0 145 51.0
Peaxi162Scf00004g04520 Petunia axillaris HOM05D004084 ORTHO05D004662 1.8e-29 133.3 136 50.7
HanXRQChr14g0432231 Helianthus annuus HOM05D004084 ORTHO05D004662 2.4e-29 132.9 165 45.5
unitig_8.g3650 Utricularia gibba HOM05D004084 ORTHO05D000654 2.4e-29 132.9 142 51.4
ECA238G4029 Erigeron canadensis HOM05D004084 ORTHO05D004662 4.1e-29 132.1 141 51.1
MBI19_g16738_MAGBIO Magnolia biondii HOM05D004084 ORTHO05D004662 4.1e-29 132.1 131 54.2
Hund21983 Selenicereus undatus HOM05D004084 ORTHO05D004662 4.1e-29 132.1 142 50.0
AT5G19430 Arabidopsis thaliana HOM05D004084 ORTHO05D004662 5.4e-29 131.7 119 56.3
Gohir.A13G219100 Gossypium hirsutum HOM05D004084 ORTHO05D004662 5.4e-29 131.7 148 48.6
Lj6g0014777 Lotus japonicus HOM05D004084 ORTHO05D004662 5.4e-29 131.7 134 55.2
BcaNung06777 Brassica carinata HOM05D004084 ORTHO05D004662 7.0e-29 131.3 122 54.9
Migut.N02373 Erythranthe guttata HOM05D004084 ORTHO05D004662 9.1e-29 131.0 140 51.4
HPP92_006725 Vanilla planifolia HOM05D004084 ORTHO05D004662 9.1e-29 131.0 126 57.1
C03p11060 Brassica napus HOM05D004084 ORTHO05D004662 1.2e-28 130.6 123 55.3
BolC3t13575H Brassica oleracea HOM05D004084 ORTHO05D004662 1.2e-28 130.6 123 55.3
Carub.0006s1777 Capsella rubella HOM05D004084 ORTHO05D004662 1.2e-28 130.6 120 55.0
MELO3C014562.2 Cucumis melo HOM05D004084 ORTHO05D004662 1.2e-28 130.6 154 46.1
Gorai.013G253900 Gossypium raimondii HOM05D004084 ORTHO05D004662 1.2e-28 130.6 148 48.0
SEGI_38021 Sequoiadendron giganteum HOM05D004084 ORTHO05D004662 1.2e-28 130.6 159 48.4
BcaB01g05145 Brassica carinata HOM05D004084 ORTHO05D004662 1.6e-28 130.2 123 55.3
A03p09480 Brassica napus HOM05D004084 ORTHO05D004662 1.6e-28 130.2 123 55.3
SEGI_32483 Sequoiadendron giganteum HOM05D004084 ORTHO05D004662 1.6e-28 130.2 139 52.5
CARHR193510 Cardamine hirsuta HOM05D004084 ORTHO05D004662 2.0e-28 129.8 121 54.5
Gohir.D13G222800 Gossypium hirsutum HOM05D004084 ORTHO05D004662 2.0e-28 129.8 148 48.0
AL6G30920 Arabidopsis lyrata HOM05D004084 ORTHO05D004662 2.7e-28 129.4 119 54.6
Ca_03985_v3 Cicer arietinum L. HOM05D004084 ORTHO05D004662 2.7e-28 129.4 140 49.3
Migut.D00657 Erythranthe guttata HOM05D004084 ORTHO05D004662 2.7e-28 129.4 136 50.0
C03p06530 Brassica napus HOM05D004084 ORTHO05D004662 3.5e-28 129.0 126 52.4
BolC3t13153H Brassica oleracea HOM05D004084 ORTHO05D004662 3.5e-28 129.0 126 52.4
BraA03t10266Z Brassica rapa HOM05D004084 ORTHO05D004662 3.5e-28 129.0 123 53.7
Glyma.07G230600 Glycine max HOM05D004084 ORTHO05D004662 3.5e-28 129.0 157 49.0
Gohir.D09G106500 Gossypium hirsutum HOM05D004084 ORTHO05D004662 4.5e-28 128.6 125 56.0
Gorai.006G124000 Gossypium raimondii HOM05D004084 ORTHO05D004662 4.5e-28 128.6 125 56.0
AagrBONN_evm.TU.Sc2ySwM_228.3727 Anthoceros agrestis HOM05D004084 ORTHO05D004662 5.9e-28 128.3 118 55.9
Lalb_Chr10g0106291 Lupinus albus HOM05D004084 ORTHO05D004662 5.9e-28 128.3 152 49.3
Hund07438 Selenicereus undatus HOM05D004084 ORTHO05D004662 5.9e-28 128.3 145 47.6
THA.LOC104824623 Tarenaya hassleriana HOM05D004084 ORTHO05D004662 5.9e-28 128.3 133 53.4
Gohir.A09G110200 Gossypium hirsutum HOM05D004084 ORTHO05D004662 1.0e-27 127.5 122 54.9
arahy.Tifrunner.gnm1.ann1.X3DJVQ Arachis hypogaea HOM05D004084 ORTHO05D004662 2.9e-27 125.9 140 49.3
CARHR200800 Cardamine hirsuta HOM05D004084 ORTHO05D004662 3.8e-27 125.6 160 46.2
Oeu016695.1 Olea europaea HOM05D004084 ORTHO05D004662 8.6e-27 124.4 131 51.1
Lsat_1_v5_gn_2_32240 Lactuca sativa HOM05D004084 ORTHO05D004662 2.5e-26 122.9 133 51.9
PGR102G0788 Punica granatum HOM05D004084 ORTHO05D004662 2.5e-26 122.9 119 57.1
HanXRQChr06g0182501 Helianthus annuus HOM05D004084 ORTHO05D004662 3.3e-26 122.5 146 50.0
Sp6g24980 Schrenkiella parvula HOM05D004084 ORTHO05D004662 5.5e-26 121.7 135 50.4
SMO337G0017 Selaginella moellendorffii HOM05D004084 ORTHO05D004662 7.2e-26 121.3 160 41.2
CsaV3_6G039010 Cucumis sativus L. HOM05D004084 ORTHO05D004662 1.2e-25 120.6 154 44.8
A10p25510 Brassica napus HOM05D004084 ORTHO05D004662 3.6e-25 119.0 121 50.4
Carub.0006s1082 Capsella rubella HOM05D004084 ORTHO05D004662 4.7e-25 118.6 127 49.6
Pp3c26_14330 Physcomitrium patens HOM05D004084 ORTHO05D004662 8.0e-25 117.9 118 54.2
AT5G12310 Arabidopsis thaliana HOM05D004084 ORTHO05D004662 1.0e-24 117.5 128 49.2
Nn7g36697 Nelumbo nucifera HOM05D004084 ORTHO05D004662 1.0e-24 117.5 119 54.6
A03p05580 Brassica napus HOM05D004084 ORTHO05D004662 1.4e-24 117.1 131 48.9
BraA03t09895Z Brassica rapa HOM05D004084 ORTHO05D004662 1.4e-24 117.1 131 48.9
BolC9t59292H Brassica oleracea HOM05D004084 ORTHO05D004662 4.0e-24 115.5 122 50.0
BraA10t44615Z Brassica rapa HOM05D004084 ORTHO05D004662 5.2e-24 115.2 121 50.4
SGA_v2.0_scaffold310G48197 Striga asiatica HOM05D004084 ORTHO05D004662 6.8e-24 114.8 119 53.8
C09p64590 Brassica napus HOM05D004084 ORTHO05D004662 2.0e-23 113.2 121 49.6
Phvul.006G030800 Phaseolus vulgaris HOM05D004084 ORTHO05D004662 3.5e-20 102.4 117 49.6
SGA_v2.0_scaffold8G04547 Striga asiatica HOM05D001938 ORTHO05D001965 2.9e-19 99.4 98 58.2
CBR_g131 Chara braunii HOM05D004084 ORTHO05D004662 3.8e-19 99.0 133 45.1
MD03G1166600 Malus domestica HOM05D004084 ORTHO05D004662 2.5e-18 96.3 116 45.7
Oeu061709.1 Olea europaea HOM05D004084 ORTHO05D004662 4.3e-18 95.5 94 54.3
CSS0029213 Camellia sinensis var. sinensis HOM05D004084 ORTHO05D004662 9.5e-18 94.4 119 47.9
arahy.Tifrunner.gnm1.ann1.6L2V6B Arachis hypogaea HOM05D004084 ORTHO05D004662 6.1e-17 91.7 135 45.9
AUR62000187 Chenopodium quinoa HOM05D004084 ORTHO05D004662 8.0e-17 91.3 105 49.5
BcaB01g04862 Brassica carinata HOM05D004084 ORTHO05D004662 2.3e-16 89.7 122 45.1
Nn7g36696 Nelumbo nucifera HOM05D004084 ORTHO05D004662 3.0e-16 89.4 105 44.8
Cre13.g604750 Chlamydomonas reinhardtii HOM05D004084 ORTHO05D004662 7.0e-13 78.2 136 37.5
BcaB01g05406 Brassica carinata HOM05D004084 ORTHO05D004662 3.5e-12 75.9 95 45.3
Sabra16G0170200 Salix brachista HOM05D004084 ORTHO05D004662 3.5e-12 75.9 115 40.9
Actinidia16378 Actinidia chinensis HOM05D004084 ORTHO05D004662 4.6e-12 75.5 47 74.5
arahy.Tifrunner.gnm1.ann1.QA9X4A Arachis hypogaea HOM05D004084 ORTHO05D004662 6.0e-12 75.1 102 45.1
Sabra09G0053400 Salix brachista HOM05D004084 ORTHO05D004662 7.8e-12 74.7 164 31.7
arahy.Tifrunner.gnm1.ann1.57BBZ5 Arachis hypogaea HOM05D004084 ORTHO05D004662 2.3e-11 73.2 96 46.9
EL10Ac8g18304 Beta vulgaris HOM05D004084 ORTHO05D004662 2.5e-10 69.7 57 54.4
TPR.G27271 Trifolium pratense HOM05D004084 ORTHO05D004662 2.5e-10 69.7 98 45.9
EL10Ac8g18303 Beta vulgaris HOM05D004084 ORTHO05D004662 3.3e-10 69.3 100 39.0
AL6G23110 Arabidopsis lyrata HOM05D004084 ORTHO05D004662 1.2e-09 67.4 98 41.8
CSS0040984 Camellia sinensis var. sinensis HOM05D004084 ORTHO05D004662 1.2e-09 67.4 99 44.4
SHI55208 Sapria himalayana HOM05D004084 ORTHO05D004662 4.0e-08 62.4 118 36.4
AUR62006538 Chenopodium quinoa HOM05D001938 ORTHO05D001965 8.3e-06 54.7 40 62.5
SalBow6G0813 Salvia bowleyana HOM05D004084 ORTHO05D004662 8.3e-06 54.7 71 42.3


User provided reference genes

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