Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE11G0898 Ceratophyllum demersum HOM05D004183 ORTHO05D005022 0.0e+00 1850.9 928 100.0
Nn5g26963 Nelumbo nucifera HOM05D004183 ORTHO05D005022 1.7e-310 1069.3 932 60.2
ATR0810G041 Amborella trichopoda HOM05D004183 ORTHO05D005022 5.5e-290 1001.1 931 55.6
Dinv04533 Davidia involucrata HOM05D004183 ORTHO05D005022 1.0e-283 980.3 939 55.2
MD10G1031900 Malus domestica HOM05D004183 ORTHO05D005022 1.0e-283 980.3 940 54.8
GSVIVG01000237001 Vitis vinifera HOM05D004183 ORTHO05D005022 1.9e-282 976.1 935 55.9
PGR102G1375 Punica granatum HOM05D004183 ORTHO05D005022 1.7e-278 963.0 927 55.1
Sed0016560 Sechium edule HOM05D004183 ORTHO05D005022 3.1e-277 958.7 928 54.8
Thecc.07G183400 Theobroma cacao HOM05D004183 ORTHO05D005022 1.6e-276 956.4 912 55.3
Duzib268G1261 Durio zibethinus HOM05D004183 ORTHO05D005022 5.0e-275 951.4 917 54.6
Gorai.002G109500 Gossypium raimondii HOM05D004183 ORTHO05D005022 9.5e-274 947.2 911 54.9
MELO3C019211.2 Cucumis melo HOM05D004183 ORTHO05D005022 2.8e-273 945.7 924 54.3
Lj1g0005856 Lotus japonicus HOM05D004183 ORTHO05D005022 1.0e-272 943.7 920 54.2
Lalb_Chr08g0237701 Lupinus albus HOM05D004183 ORTHO05D005022 1.0e-272 943.7 920 55.0
FvH4_7g02460 Fragaria vesca HOM05D004183 ORTHO05D005022 1.8e-272 943.0 932 53.9
Gohir.A01G099200 Gossypium hirsutum HOM05D004183 ORTHO05D005022 1.8e-272 943.0 923 54.1
CsaV3_2G035420 Cucumis sativus L. HOM05D004183 ORTHO05D005022 6.8e-272 941.0 929 54.7
Ca_17037_v3 Cicer arietinum L. HOM05D004183 ORTHO05D005022 3.4e-271 938.7 929 54.9
FAN06G5080 Fragaria x ananassa HOM05D004183 ORTHO05D005022 5.7e-271 937.9 936 53.5
Psat5g056520 Pisum sativum HOM05D004183 ORTHO05D005022 9.8e-271 937.2 930 54.0
RcHm_v2.0_Chr1g0321111 Rosa chinensis HOM05D004183 ORTHO05D005022 6.3e-270 934.5 935 53.7
Medtr3g098060 Medicago truncatula HOM05D004183 ORTHO05D005022 1.6e-268 929.9 927 53.5
TPR.G7801 Trifolium pratense HOM05D004183 ORTHO05D005022 2.3e-267 926.0 941 53.1
Glyma.04G204500 Glycine max HOM05D004183 ORTHO05D005022 5.0e-267 924.9 923 54.1
Duzib106G0093 Durio zibethinus HOM05D004183 ORTHO05D005022 1.2e-265 920.2 920 53.7
Sc24g0002700 Simmondsia chinensis HOM05D004183 ORTHO05D005022 4.7e-265 918.3 931 53.6
Aqoxy7G00086 Aquilegia oxysepala HOM05D004183 ORTHO05D005022 1.0e-264 917.1 937 53.3
Gohir.D01G083800 Gossypium hirsutum HOM05D004183 ORTHO05D005022 2.3e-264 916.0 911 53.9
Potri.004G080800 Populus trichocarpa HOM05D004183 ORTHO05D005022 3.0e-264 915.6 929 53.5
PSO782G1025 Papaver somniferum HOM05D004183 ORTHO05D005022 1.5e-263 913.3 936 52.5
PSO063G6994 Papaver somniferum HOM05D004183 ORTHO05D005022 3.7e-262 908.7 935 52.4
THA.LOC104827224 Tarenaya hassleriana HOM05D004183 ORTHO05D005022 3.7e-262 908.7 918 53.6
Atru.chr3.3380 Acer truncatum HOM05D004183 ORTHO05D005022 6.4e-262 907.9 799 58.6
FAN03G0165 Fragaria x ananassa HOM05D004183 ORTHO05D005022 1.1e-261 907.1 936 53.0
TWI75G1732 Tripterygium wilfordii HOM05D004183 ORTHO05D005022 2.7e-260 902.5 939 52.1
Phvul.009G160200 Phaseolus vulgaris HOM05D004183 ORTHO05D005022 3.0e-259 899.0 925 53.2
ClCG06G014020 Citrullus lanatus HOM05D004183 ORTHO05D005022 1.9e-258 896.3 910 53.5
Migut.N00455 Erythranthe guttata HOM05D004183 ORTHO05D005022 6.2e-257 891.3 922 51.5
CANSAT78G1267 Cannabis sativa HOM05D004183 ORTHO05D005022 2.6e-255 885.9 930 51.6
Cc03_g10770 Coffea canephora HOM05D004183 ORTHO05D005022 1.3e-251 873.6 935 50.8
C09p59920 Brassica napus HOM05D004183 ORTHO05D005022 3.0e-251 872.5 929 50.7
BolC9t58828H Brassica oleracea HOM05D004183 ORTHO05D005022 1.6e-249 866.7 932 50.5
EL10Ac8g19353 Beta vulgaris HOM05D004183 ORTHO05D005022 4.7e-249 865.1 925 52.0
Prupe.2G030300 Prunus persica HOM05D004183 ORTHO05D005022 1.8e-248 863.2 932 50.8
Actinidia11211 Actinidia chinensis HOM05D004183 ORTHO05D005022 5.2e-248 861.7 936 51.0
A10p22130 Brassica napus HOM05D004183 ORTHO05D005022 1.5e-247 860.1 927 50.5
CSS0046717 Camellia sinensis var. sinensis HOM05D004183 ORTHO05D005022 9.9e-247 857.4 930 50.5
Oeu006040.1 Olea europaea HOM05D004183 ORTHO05D005022 2.9e-246 855.9 940 50.1
BraA10t44272Z Brassica rapa HOM05D004183 ORTHO05D005022 6.4e-246 854.7 927 50.5
Sabra04G0053600 Salix brachista HOM05D004183 ORTHO05D005022 8.3e-246 854.4 1000 48.9
FAN10G3177 Fragaria x ananassa HOM05D004183 ORTHO05D005022 5.4e-245 851.7 960 50.0
Phvul.009G192300 Phaseolus vulgaris HOM05D004183 ORTHO05D005022 1.6e-241 840.1 935 50.3
Rhsim03G0265100 Rhododendron simsii HOM05D004183 ORTHO05D005022 4.0e-240 835.5 895 51.3
arahy.Tifrunner.gnm1.ann1.RUK03S Arachis hypogaea HOM05D004183 ORTHO05D005022 4.9e-238 828.6 922 50.1
arahy.Tifrunner.gnm1.ann1.4S33SI Arachis hypogaea HOM05D004183 ORTHO05D005022 5.4e-237 825.1 921 49.8
BcaB08g36793 Brassica carinata HOM05D004183 ORTHO05D005022 1.3e-235 820.5 917 49.0
Nitab4.5_0010834g0010 Nicotiana tabacum HOM05D004183 ORTHO05D005022 3.9e-235 818.9 931 48.9
Eucgr.H05055 Eucalyptus grandis HOM05D004183 ORTHO05D005022 3.3e-234 815.8 721 59.1
HanXRQChr15g0484541 Helianthus annuus HOM05D004183 ORTHO05D005022 4.7e-233 812.0 910 49.5
CARHR195930 Cardamine hirsuta HOM05D004183 ORTHO05D005022 1.5e-231 807.0 909 48.6
Carub.0006s1546 Capsella rubella HOM05D004183 ORTHO05D005022 1.6e-228 797.0 917 48.4
Sopen07g004700 Solanum pennellii HOM05D004183 ORTHO05D005022 1.6e-228 797.0 928 46.8
Haze_19348 Corylus avellana HOM05D004183 ORTHO05D005022 3.0e-227 792.7 876 51.3
Manes.10G067101 Manihot esculenta HOM05D004183 ORTHO05D005022 3.0e-227 792.7 672 61.3
C03p09610 Brassica napus HOM05D004183 ORTHO05D005022 4.3e-226 788.9 910 48.2
BolC3t13450H Brassica oleracea HOM05D004183 ORTHO05D005022 1.1e-224 784.3 925 47.8
SGA_v2.0_scaffold7G03721 Striga asiatica HOM05D004183 ORTHO05D005022 3.1e-224 782.7 922 46.6
AL6G28330 Arabidopsis lyrata HOM05D004183 ORTHO05D005022 9.3e-221 771.2 911 47.6
Solyc07g008760.4 Solanum lycopersicum HOM05D004183 ORTHO05D005022 9.3e-221 771.2 927 46.2
BcaB01g05214 Brassica carinata HOM05D004183 ORTHO05D005022 1.8e-219 766.9 911 47.3
Lsat_1_v5_gn_3_54960 Lactuca sativa HOM05D004183 ORTHO05D005022 5.1e-219 765.4 913 47.2
COL.COLO4_19761 Corchorus olitorius HOM05D004183 ORTHO05D005022 8.7e-219 764.6 910 47.3
Thhalv10012633m.g Eutrema salsugineum HOM05D004183 ORTHO05D005022 2.1e-217 760.0 912 46.8
Sp6g26960 Schrenkiella parvula HOM05D004183 ORTHO05D005022 8.1e-217 758.1 913 46.7
AT5G37130 Arabidopsis thaliana HOM05D004183 ORTHO05D005022 3.1e-216 756.1 912 47.0
CAN.G333.6 Capsicum annuum HOM05D004183 ORTHO05D005022 4.5e-215 752.3 921 45.4
AUR62027369 Chenopodium quinoa HOM05D004183 ORTHO05D005022 2.5e-213 746.5 1165 39.9
vmacro06007 Vaccinium macrocarpon HOM05D004183 ORTHO05D005022 4.2e-213 745.7 1080 42.3
Os07g0455100 Oryza sativa ssp. japonica HOM05D004183 ORTHO05D005022 2.7e-212 743.0 915 45.7
Zm00001eb096590 Zea mays HOM05D004183 ORTHO05D005022 7.9e-212 741.5 929 45.0
Peaxi162Scf01600g00023 Petunia axillaris HOM05D004183 ORTHO05D005022 3.3e-210 736.1 930 45.7
RcHm_v2.0_Chr1g0320601 Rosa chinensis HOM05D004183 ORTHO05D005022 3.3e-210 736.1 707 55.7
BcaC04g18812 Brassica carinata HOM05D004183 ORTHO05D005022 7.4e-210 734.9 927 45.6
Nitab4.5_0000617g0040 Nicotiana tabacum HOM05D004183 ORTHO05D005022 2.8e-209 733.0 930 45.7
Aa31LG11G12400 Aethionema arabicum HOM05D004183 ORTHO05D005022 1.5e-207 727.2 952 44.9
MSTRG.24596 Avicennia marina HOM05D004183 ORTHO05D005022 2.6e-207 726.5 934 44.6
A03p08250 Brassica napus HOM05D004183 ORTHO05D005022 3.0e-203 713.0 737 51.6
Ah.09g232030 Amaranthus hybridus HOM05D004183 ORTHO05D005022 4.5e-199 699.1 755 50.2
CiPaw.15G184500 Carya illinoinensis HOM05D004183 ORTHO05D005022 3.3e-186 656.4 497 67.0
ECA246G4622 Erigeron canadensis HOM05D004183 ORTHO05D005022 5.3e-184 649.0 696 50.7
AL6G28350 Arabidopsis lyrata HOM05D004183 ORTHO05D005022 1.0e-182 644.8 842 45.5
BraA03t10145Z Brassica rapa HOM05D004183 ORTHO05D005022 1.9e-181 640.6 924 43.2
unitig_8.g5004 Utricularia gibba HOM05D004183 ORTHO05D005022 3.9e-179 632.9 940 40.6
Ciclev10030817m.g Citrus clementina HOM05D004183 ORTHO05D005022 1.0e-174 618.2 900 42.2
AT5G17270 Arabidopsis thaliana HOM05D004183 ORTHO05D005022 1.1e-173 614.8 673 49.8
Ciclev10033903m.g Citrus clementina HOM05D004183 ORTHO05D005022 4.7e-172 609.4 555 57.5
DCAR_009033 Daucus carota HOM05D004183 ORTHO05D005022 8.8e-171 605.1 653 50.8
VMungo1309G0357 Vigna mungo HOM05D004183 ORTHO05D005022 4.5e-167 592.8 935 40.1
Ciclev10031527m.g Citrus clementina HOM05D004183 ORTHO05D005022 4.7e-164 582.8 442 65.6
AUR62031288 Chenopodium quinoa HOM05D004183 ORTHO05D005022 8.3e-161 572.0 473 60.9
Mapoly0026s0116 Marchantia polymorpha HOM05D004183 ORTHO05D005022 2.9e-158 563.5 954 37.4
VMungo1309G2786 Vigna mungo HOM05D004183 ORTHO05D005022 4.7e-148 529.6 413 64.2
HPP92_011016 Vanilla planifolia HOM05D004183 ORTHO05D005022 4.3e-141 506.5 517 51.6
SHI30096 Sapria himalayana HOM05D004183 ORTHO05D005022 4.9e-137 493.0 919 36.5
Pp3c1_12830 Physcomitrium patens HOM05D004183 ORTHO05D005022 1.6e-132 478.0 930 34.3
RcHm_v2.0_Chr1g0320041 Rosa chinensis HOM05D004183 ORTHO05D005022 3.4e-114 417.2 486 49.2
AagrBONN_evm.TU.Sc2ySwM_344.1225 Anthoceros agrestis HOM05D004183 ORTHO05D005022 6.0e-111 406.4 484 45.9
Ciclev10033525m.g Citrus clementina HOM05D004183 ORTHO05D005022 1.7e-110 404.8 556 42.8
Cpa.g.sc178.29 Carica papaya HOM05D004183 ORTHO05D005022 6.7e-102 376.3 398 54.0
MCO15G220 Micromonas commoda HOM05D004183 ORTHO05D005022 1.9e-101 374.8 855 31.8
RcHm_v2.0_Chr1g0319751 Rosa chinensis HOM05D004183 ORTHO05D005022 1.0e-97 362.5 361 54.3
VMungo1309G0778 Vigna mungo HOM05D004183 ORTHO05D005022 1.2e-95 355.5 489 44.4
RcHm_v2.0_Chr1g0320901 Rosa chinensis HOM05D004183 ORTHO05D005022 7.9e-95 352.8 328 56.4
Hund12628 Selenicereus undatus HOM05D004183 ORTHO05D005022 1.0e-94 352.4 222 73.9
Hund27690 Selenicereus undatus HOM05D004183 ORTHO05D005022 1.0e-94 352.4 222 73.9
RcHm_v2.0_Chr1g0319801 Rosa chinensis HOM05D004183 ORTHO05D005022 5.1e-94 350.1 255 66.3
Glyma.06G161100 Glycine max HOM05D004183 ORTHO05D005022 9.0e-91 339.3 485 44.3
SEGI_18489 Sequoiadendron giganteum HOM05D004183 ORTHO05D005022 2.2e-89 334.7 300 57.7
Ciclev10033738m.g Citrus clementina HOM05D004183 ORTHO05D005022 1.5e-85 322.0 424 43.9
CBR_g19343 Chara braunii HOM05D004183 ORTHO05D005022 7.7e-82 309.7 543 35.9
RcHm_v2.0_Chr1g0320781 Rosa chinensis HOM05D004183 ORTHO05D005022 3.0e-78 297.7 280 56.1
AUR62031284 Chenopodium quinoa HOM05D004183 ORTHO05D005022 2.2e-76 291.6 474 39.7
COL.COLO4_14587 Corchorus olitorius HOM05D004183 ORTHO05D005022 8.5e-73 279.6 476 39.1
BcaB01g04945 Brassica carinata HOM05D004183 ORTHO05D005022 1.5e-69 268.9 334 45.8
RcHm_v2.0_Chr1g0319811 Rosa chinensis HOM05D004183 ORTHO05D005022 1.2e-66 259.2 405 39.3
Cre09.g401700 Chlamydomonas reinhardtii HOM05D004183 ORTHO05D005022 1.5e-61 242.3 505 31.7
RcHm_v2.0_Chr1g0319861 Rosa chinensis HOM05D004183 ORTHO05D005022 4.1e-59 234.2 612 31.0
Ciclev10033659m.g Citrus clementina HOM05D004183 ORTHO05D005022 7.2e-56 223.4 463 33.9
Cpa.g.sc178.30 Carica papaya HOM05D004183 ORTHO05D005022 1.2e-53 216.1 342 39.2
PRCOL_00002789 Prasinoderma coloniale HOM05D004183 ORTHO05D005022 1.7e-52 212.2 545 28.6
CARHR154510 Cardamine hirsuta HOM05D004183 ORTHO05D005022 6.3e-52 210.3 239 48.1
SMO147G0329 Selaginella moellendorffii HOM05D004183 ORTHO05D005022 1.1e-51 209.5 385 34.8
Ciclev10031844m.g Citrus clementina HOM05D004183 ORTHO05D005022 1.8e-51 208.8 248 48.0
CARHR154500 Cardamine hirsuta HOM05D004183 ORTHO05D005022 1.2e-50 206.1 242 44.2
Ciclev10032594m.g Citrus clementina HOM05D004183 ORTHO05D005022 2.2e-44 185.3 248 41.1
CARHR154520 Cardamine hirsuta HOM05D004183 ORTHO05D005022 3.1e-43 181.4 171 50.9
SEGI_41562 Sequoiadendron giganteum HOM05D004183 ORTHO05D005022 1.2e-42 179.5 137 59.1
Hund12629 Selenicereus undatus HOM05D004183 ORTHO05D005022 2.2e-36 158.7 174 49.4
Hund27689 Selenicereus undatus HOM05D004183 ORTHO05D005022 2.2e-36 158.7 174 49.4
Ciclev10033120m.g Citrus clementina HOM05D004183 ORTHO05D005022 7.8e-34 150.2 105 70.5
CDE09G0586 Ceratophyllum demersum HOM05D004183 ORTHO05D005022 6.0e-26 124.0 63 88.9
COL.COLO4_14589 Corchorus olitorius HOM05D004183 ORTHO05D005022 2.5e-24 118.6 231 34.2
RcHm_v2.0_Chr1g0320761 Rosa chinensis HOM05D004183 ORTHO05D005022 1.2e-23 116.3 201 37.8
MBI08_g38580_MAGBIO Magnolia biondii HOM05D004183 ORTHO05D005022 8.1e-23 113.6 78 73.1
Cfa027322 Carpinus fangiana HOM05D004183 ORTHO05D005022 3.1e-22 111.7 751 21.3
BcaB01g04944 Brassica carinata HOM05D004183 ORTHO05D005022 1.2e-21 109.8 194 40.2
SEGI_41292 Sequoiadendron giganteum HOM05D004183 ORTHO05D005022 2.2e-20 105.5 212 34.9
RcHm_v2.0_Chr1g0319771 Rosa chinensis HOM05D004183 ORTHO05D005022 3.7e-20 104.8 141 42.6
HPP92_027571 Vanilla planifolia HOM05D004183 ORTHO05D005022 4.9e-20 104.4 77 64.9
CBR_g19342 Chara braunii HOM05D000019 ORTHO05D000002 7.8e-18 97.1 138 42.8
RcHm_v2.0_Chr1g0320911 Rosa chinensis HOM05D004183 ORTHO05D005022 3.9e-17 94.7 169 37.3
SEGI_06721 Sequoiadendron giganteum HOM05D004183 ORTHO05D005022 5.1e-17 94.4 157 42.0
RcHm_v2.0_Chr1g0319761 Rosa chinensis HOM05D004183 ORTHO05D005022 1.1e-16 93.2 169 36.7
CDE09G0126 Ceratophyllum demersum HOM05D004183 ORTHO05D005022 4.0e-14 84.7 56 76.8
RcHm_v2.0_Chr1g0320921 Rosa chinensis HOM05D004183 ORTHO05D005022 4.0e-14 84.7 79 51.9
BcaC08g45519 Brassica carinata HOM05D004183 ORTHO05D005022 5.4e-11 74.3 122 38.5
CARHR185280 Cardamine hirsuta HOM05D004183 ORTHO05D005022 2.7e-10 72.0 45 77.8
Hma1.2p1_0197F.1_g085110 Hydrangea macrophylla HOM05D004183 ORTHO05D008470 1.8e-06 59.3 45 62.2


User provided reference genes

Program Settings