Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE11G0853 Ceratophyllum demersum HOM05D004053 ORTHO05D005065 5.3e-162 574.3 296 100.0
CDE05G2296 Ceratophyllum demersum HOM05D004053 ORTHO05D005065 9.7e-148 526.9 296 91.2
TAR362G1031 Trochodendron aralioides HOM05D004053 ORTHO05D005065 9.0e-77 291.2 306 50.3
Haze_04757 Corylus avellana HOM05D004053 ORTHO05D005065 2.6e-68 263.1 273 53.1
GSVIVG01011074001 Vitis vinifera HOM05D004053 ORTHO05D005065 4.5e-68 262.3 269 53.9
Nn4g26160 Nelumbo nucifera HOM05D004053 ORTHO05D005065 2.2e-67 260.0 281 49.1
Eucgr.K03405 Eucalyptus grandis HOM05D004053 ORTHO05D005065 6.5e-67 258.5 286 51.0
Ciclev10020315m.g Citrus clementina HOM05D004053 ORTHO05D005065 5.5e-66 255.4 273 50.2
Cfa006097 Carpinus fangiana HOM05D004053 ORTHO05D005065 1.2e-65 254.2 273 52.0
MELO3C014420.2 Cucumis melo HOM05D004053 ORTHO05D005065 1.6e-65 253.8 268 52.2
Gohir.D12G005800 Gossypium hirsutum HOM05D004053 ORTHO05D005065 1.6e-65 253.8 272 50.4
Duzib138G0912 Durio zibethinus HOM05D004053 ORTHO05D005065 2.1e-65 253.4 272 50.7
QL12p022856 Quercus lobata HOM05D004053 ORTHO05D005065 2.1e-65 253.4 271 51.3
PSO832G4321 Papaver somniferum HOM05D004053 ORTHO05D005065 2.7e-65 253.1 306 45.8
Manes.01G210500 Manihot esculenta HOM05D004053 ORTHO05D005065 3.5e-65 252.7 274 50.7
MD11G1290800 Malus domestica HOM05D004053 ORTHO05D005065 4.6e-65 252.3 287 50.5
Gorai.008G005800 Gossypium raimondii HOM05D004053 ORTHO05D005065 7.9e-65 251.5 272 50.0
CsaV3_6G036930 Cucumis sativus L. HOM05D004053 ORTHO05D005065 1.8e-64 250.4 255 52.9
ClCG07G000110 Citrullus lanatus HOM05D004053 ORTHO05D005065 5.1e-64 248.8 268 50.4
Prupe.8G245900 Prunus persica HOM05D004053 ORTHO05D005065 1.9e-63 246.9 283 49.1
Gohir.A12G006400 Gossypium hirsutum HOM05D004053 ORTHO05D005065 3.3e-63 246.1 272 47.8
Duzib133G0805 Durio zibethinus HOM05D004053 ORTHO05D005065 4.3e-63 245.7 272 48.2
Lj2A1179G44 Lonicera japonica HOM05D004053 ORTHO05D005065 7.4e-63 245.0 305 45.6
RcHm_v2.0_Chr6g0291821 Rosa chinensis HOM05D004053 ORTHO05D005065 7.4e-63 245.0 272 49.3
Gorai.007G133800 Gossypium raimondii HOM05D004053 ORTHO05D005065 9.6e-63 244.6 273 49.1
CANSAT25G0924 Cannabis sativa HOM05D004053 ORTHO05D005065 1.3e-62 244.2 270 50.4
Gohir.D11G124800 Gossypium hirsutum HOM05D004053 ORTHO05D005065 2.1e-62 243.4 273 49.1
PGR044G2575 Punica granatum HOM05D004053 ORTHO05D005065 2.1e-62 243.4 270 48.1
Thecc.01G284500 Theobroma cacao HOM05D004053 ORTHO05D005065 2.1e-62 243.4 272 48.9
Atru.chr5.1352 Acer truncatum HOM05D004053 ORTHO05D005065 2.4e-61 240.0 300 44.7
Actinidia00729 Actinidia chinensis HOM05D004053 ORTHO05D005065 2.4e-61 240.0 279 47.3
FvH4_2g24050 Fragaria vesca HOM05D004053 ORTHO05D005065 3.1e-61 239.6 272 48.2
FAN24G1933 Fragaria x ananassa HOM05D004053 ORTHO05D005065 3.1e-61 239.6 272 48.2
FAN20G0349 Fragaria x ananassa HOM05D004053 ORTHO05D005065 9.0e-61 238.0 273 48.7
Gohir.A11G120100 Gossypium hirsutum HOM05D004053 ORTHO05D005065 4.5e-60 235.7 273 47.3
FAN15G3549 Fragaria x ananassa HOM05D004053 ORTHO05D005065 3.8e-59 232.6 273 47.3
Lj1C43T4 Lonicera japonica HOM05D004053 ORTHO05D005065 3.8e-59 232.6 275 47.3
CiPaw.07G095100 Carya illinoinensis HOM05D004053 ORTHO05D005065 6.5e-59 231.9 272 51.1
MD03G1269800 Malus domestica HOM05D004053 ORTHO05D005065 8.5e-59 231.5 287 46.7
Rhsim13G0022200 Rhododendron simsii HOM05D004053 ORTHO05D005065 1.4e-58 230.7 272 45.2
HanXRQChr02g0046661 Helianthus annuus HOM05D004053 ORTHO05D005065 2.5e-58 229.9 281 47.7
Duzib211G0472 Durio zibethinus HOM05D004053 ORTHO05D005065 3.2e-58 229.6 272 47.1
ECA248G2902 Erigeron canadensis HOM05D004053 ORTHO05D005065 3.2e-58 229.6 266 49.6
Lj5g0001920 Lotus japonicus HOM05D004053 ORTHO05D005065 1.2e-57 227.6 279 45.5
FAN27G0975 Fragaria x ananassa HOM05D004053 ORTHO05D005065 2.1e-57 226.9 273 46.9
TWI14G1274 Tripterygium wilfordii HOM05D004053 ORTHO05D005065 2.7e-57 226.5 276 46.7
Actinidia24316 Actinidia chinensis HOM05D004053 ORTHO05D005065 4.6e-57 225.7 279 46.6
CSS0023044 Camellia sinensis var. sinensis HOM05D004053 ORTHO05D005065 4.6e-57 225.7 274 47.1
Cpa.g.sc9.119 Carica papaya HOM05D004053 ORTHO05D005065 1.8e-56 223.8 283 44.5
Nn1g02136 Nelumbo nucifera HOM05D004053 ORTHO05D005065 2.3e-56 223.4 249 51.0
Glyma.10G024200 Glycine max HOM05D004053 ORTHO05D005065 6.7e-56 221.9 268 47.4
HanXRQChr01g0002441 Helianthus annuus HOM05D004053 ORTHO05D005065 1.5e-55 220.7 268 48.5
vmacro02546 Vaccinium macrocarpon HOM05D004053 ORTHO05D005065 1.5e-55 220.7 272 45.2
Oeu011173.1 Olea europaea HOM05D004053 ORTHO05D005065 1.9e-55 220.3 269 44.6
Potri.014G138200 Populus trichocarpa HOM05D004053 ORTHO05D005065 1.9e-55 220.3 275 44.4
CiPaw.08G102900 Carya illinoinensis HOM05D004053 ORTHO05D005065 2.5e-55 219.9 264 48.9
Glyma.02G149700 Glycine max HOM05D004053 ORTHO05D005065 4.3e-55 219.2 268 47.4
Phvul.001G148300 Phaseolus vulgaris HOM05D004053 ORTHO05D005065 5.7e-55 218.8 271 48.3
Sed0017907 Sechium edule HOM05D004053 ORTHO05D005065 5.7e-55 218.8 327 41.9
Aqoxy5G00541 Aquilegia oxysepala HOM05D004053 ORTHO05D005065 2.8e-54 216.5 290 42.8
Lalb_Chr21g0306591 Lupinus albus HOM05D004053 ORTHO05D005065 2.8e-54 216.5 272 45.6
Potri.002G215800 Populus trichocarpa HOM05D004053 ORTHO05D005065 2.8e-54 216.5 274 44.5
Aqoxy2G03230 Aquilegia oxysepala HOM05D004053 ORTHO05D005065 4.8e-54 215.7 308 39.9
Ca_10403_v3 Cicer arietinum L. HOM05D004053 ORTHO05D005065 6.3e-54 215.3 275 44.7
arahy.Tifrunner.gnm1.ann1.K8THJN Arachis hypogaea HOM05D004053 ORTHO05D005065 8.2e-54 214.9 260 46.9
PSO541G4889 Papaver somniferum HOM05D004053 ORTHO05D005065 1.4e-53 214.2 291 44.3
Migut.D00258 Erythranthe guttata HOM05D004053 ORTHO05D005065 1.8e-53 213.8 272 43.4
Lalb_Chr06g0163121 Lupinus albus HOM05D004053 ORTHO05D005065 1.8e-53 213.8 272 45.6
arahy.Tifrunner.gnm1.ann1.V8R19R Arachis hypogaea HOM05D004053 ORTHO05D005065 2.4e-53 213.4 260 46.5
Cc01_g19820 Coffea canephora HOM05D004053 ORTHO05D005065 6.9e-53 211.8 269 46.5
PSO675G9209 Papaver somniferum HOM05D004053 ORTHO05D005065 6.9e-53 211.8 312 42.0
Medtr1g089980 Medicago truncatula HOM05D004053 ORTHO05D005065 1.2e-52 211.1 270 44.1
Nitab4.5_0008204g0020 Nicotiana tabacum HOM05D004053 ORTHO05D005065 1.5e-52 210.7 273 44.3
Glyma.19G153300 Glycine max HOM05D004053 ORTHO05D005065 4.5e-52 209.1 271 46.5
Glyma.03G150700 Glycine max HOM05D004053 ORTHO05D005065 5.9e-52 208.8 271 47.2
MSTRG.21579 Avicennia marina HOM05D004053 ORTHO05D005065 7.7e-52 208.4 283 43.8
Phvul.007G169200 Phaseolus vulgaris HOM05D004053 ORTHO05D005065 1.3e-51 207.6 270 44.4
VMungo0720G1290 Vigna mungo HOM05D004053 ORTHO05D005065 2.9e-51 206.5 270 44.1
Lsat_1_v5_gn_5_187500 Lactuca sativa HOM05D004053 ORTHO05D005065 3.8e-51 206.1 272 46.3
Psat6g168840 Pisum sativum HOM05D004053 ORTHO05D005065 1.2e-49 201.1 270 43.0
Solyc09g072990.3 Solanum lycopersicum HOM05D004053 ORTHO05D005065 1.6e-49 200.7 273 44.0
THA.LOC104801216 Tarenaya hassleriana HOM05D004053 ORTHO05D005065 2.7e-49 199.9 261 42.5
PGSC0003DMG400003799 Solanum tuberosum HOM05D004053 ORTHO05D005065 7.9e-49 198.4 276 42.8
Peaxi162Scf00777g00211 Petunia axillaris HOM05D004053 ORTHO05D005065 1.0e-48 198.0 273 42.9
Sopen09g028800 Solanum pennellii HOM05D004053 ORTHO05D005065 1.0e-48 198.0 276 42.8
DCAR_005821 Daucus carota HOM05D004053 ORTHO05D005065 3.9e-48 196.1 270 43.3
Medtr7g094470 Medicago truncatula HOM05D004053 ORTHO05D005065 3.9e-48 196.1 268 45.1
Nitab4.5_0001323g0010 Nicotiana tabacum HOM05D004053 ORTHO05D005065 3.9e-48 196.1 285 41.8
arahy.Tifrunner.gnm1.ann1.U9BU7H Arachis hypogaea HOM05D004053 ORTHO05D005065 6.7e-48 195.3 264 43.9
TPR.G32826 Trifolium pratense HOM05D004053 ORTHO05D005065 8.8e-48 194.9 266 44.7
Psat3g065760 Pisum sativum HOM05D004053 ORTHO05D005065 4.4e-47 192.6 268 42.9
Ca_08561_v3 Cicer arietinum L. HOM05D004053 ORTHO05D005065 7.4e-47 191.8 268 42.9
Ca_08595_v3 Cicer arietinum L. HOM05D004053 ORTHO05D005065 7.4e-47 191.8 268 42.9
Hma1.2p1_0257F.1_g103830 Hydrangea macrophylla HOM05D004053 ORTHO05D005065 2.8e-46 189.9 231 45.0
Sabra14G0104300 Salix brachista HOM05D004053 ORTHO05D005065 8.2e-46 188.3 328 36.3
EL10Ac7g17207 Beta vulgaris HOM05D004053 ORTHO05D005065 2.4e-45 186.8 274 42.7
Lj1g0006875 Lotus japonicus HOM05D004053 ORTHO05D005065 6.9e-45 185.3 281 42.0
Sc05g0005080 Simmondsia chinensis HOM05D004053 ORTHO05D005065 7.7e-44 181.8 244 43.9
VMungo1383G0556 Vigna mungo HOM05D004053 ORTHO05D005065 1.0e-43 181.4 269 41.3
DCAR_012450 Daucus carota HOM05D004053 ORTHO05D005065 1.7e-43 180.6 287 38.3
Zm00001eb417790 Zea mays HOM05D004053 ORTHO05D005065 2.9e-43 179.9 274 39.8
Oeu041712.1 Olea europaea HOM05D004053 ORTHO05D005065 3.8e-43 179.5 193 50.8
Dinv11260 Davidia involucrata HOM05D004053 ORTHO05D005065 8.5e-43 178.3 196 49.0
AUR62033710 Chenopodium quinoa HOM05D004053 ORTHO05D005065 1.1e-42 177.9 253 45.5
Carub.0006s3417 Capsella rubella HOM05D004053 ORTHO05D005065 2.5e-42 176.8 269 41.6
AUR62036816 Chenopodium quinoa HOM05D004053 ORTHO05D005065 2.5e-42 176.8 253 45.1
Sp6g02950 Schrenkiella parvula HOM05D004053 ORTHO05D005065 7.2e-42 175.3 267 40.8
SGA_v2.0_scaffold1G00444 Striga asiatica HOM05D004053 ORTHO05D005065 7.2e-42 175.3 231 42.0
THA.LOC104815946 Tarenaya hassleriana HOM05D004053 ORTHO05D005065 1.6e-41 174.1 272 38.2
Thhalv10028686m.g Eutrema salsugineum HOM05D004053 ORTHO05D005065 6.1e-41 172.2 269 40.9
BraA03t12252Z Brassica rapa HOM05D004053 ORTHO05D005065 3.9e-40 169.5 266 39.1
BcaB01g02487 Brassica carinata HOM05D004053 ORTHO05D005065 8.8e-40 168.3 267 39.0
A03p30730 Brassica napus HOM05D004053 ORTHO05D005065 1.5e-39 167.5 266 38.7
CARHR251290 Cardamine hirsuta HOM05D004053 ORTHO05D005065 1.5e-39 167.5 270 40.0
Os05g0143300 Oryza sativa ssp. japonica HOM05D004053 ORTHO05D005065 1.5e-39 167.5 275 37.5
AT4G02920 Arabidopsis thaliana HOM05D004053 ORTHO05D005065 5.7e-39 165.6 270 40.7
C03p37430 Brassica napus HOM05D004053 ORTHO05D005065 9.7e-39 164.9 255 38.8
BolC3t16035H Brassica oleracea HOM05D004053 ORTHO05D005065 1.7e-38 164.1 255 38.8
SalBow6G4695 Salvia bowleyana HOM05D004053 ORTHO05D005065 2.8e-38 163.3 269 38.7
AL6G50010 Arabidopsis lyrata HOM05D004053 ORTHO05D005065 5.9e-36 155.6 268 38.4
Aa31LG5G2500 Aethionema arabicum HOM05D004053 ORTHO05D005065 1.9e-34 150.6 271 34.3
Sp1g02330 Schrenkiella parvula HOM05D004053 ORTHO05D005065 2.1e-33 147.1 257 34.2
Carub.0001s0245 Capsella rubella HOM05D004053 ORTHO05D005065 3.6e-33 146.4 237 40.9
ATR0665G655 Amborella trichopoda HOM05D004053 ORTHO05D005065 4.7e-33 146.0 230 40.4
AT1G03340 Arabidopsis thaliana HOM05D004053 ORTHO05D005065 8.0e-33 145.2 237 39.2
AL1G12850 Arabidopsis lyrata HOM05D004053 ORTHO05D005065 1.4e-32 144.4 270 36.7
Thhalv10007898m.g Eutrema salsugineum HOM05D004053 ORTHO05D005065 1.7e-30 137.5 261 33.7
BraA10t42462Z Brassica rapa HOM05D004053 ORTHO05D005065 3.1e-29 133.3 257 34.2
TPR.G13395 Trifolium pratense HOM05D004053 ORTHO05D005065 4.1e-29 132.9 189 42.3
BcaC01g06723 Brassica carinata HOM05D004053 ORTHO05D005065 1.6e-28 131.0 170 44.7
arahy.Tifrunner.gnm1.ann1.F0KDF8 Arachis hypogaea HOM05D004053 ORTHO05D005065 1.0e-27 128.3 215 39.1
BolC2t09985H Brassica oleracea HOM05D004053 ORTHO05D005065 1.0e-24 118.2 151 45.7
BcaC05g24539 Brassica carinata HOM05D004053 ORTHO05D005065 1.4e-24 117.9 170 41.8
C02p39720 Brassica napus HOM05D004053 ORTHO05D005065 5.2e-24 115.9 151 44.4
A02p25050 Brassica napus HOM05D004053 ORTHO05D005065 1.5e-23 114.4 151 43.7
BraA02t07493Z Brassica rapa HOM05D004053 ORTHO05D005065 1.5e-23 114.4 151 43.7
unitig_8.g3318 Utricularia gibba HOM05D004053 ORTHO05D005065 2.0e-23 114.0 238 35.3
BcaC03g16190 Brassica carinata HOM05D004053 ORTHO05D005065 7.5e-23 112.1 143 45.5
A10p01890 Brassica napus HOM05D004053 ORTHO05D005065 1.3e-22 111.3 226 36.3
MBI17_g34956_MAGBIO Magnolia biondii HOM05D004053 ORTHO05D005065 1.4e-21 107.8 138 44.9
Hma1.2p1_4080F.1_g338240 Hydrangea macrophylla HOM05D004053 ORTHO05D005065 1.3e-14 84.7 126 42.9
SEGI_15237 Sequoiadendron giganteum HOM05D004053 ORTHO05D005065 3.7e-14 83.2 187 29.9
RcHm_v2.0_Chr6g0291831 Rosa chinensis HOM05D004053 ORTHO05D005065 9.2e-13 78.6 76 53.9
unitig_22.g6690 Utricularia gibba HOM05D004053 ORTHO05D005065 1.8e-08 64.3 169 29.6
BcaB06g27908 Brassica carinata HOM05D000021 ORTHO05D000010 2.3e-08 63.9 82 45.1
BcaB04g19084 Brassica carinata HOM05D004053 ORTHO05D005065 3.0e-08 63.5 62 51.6
CARHR002650 Cardamine hirsuta HOM05D004053 ORTHO05D005065 2.0e-07 60.8 80 41.2
arahy.Tifrunner.gnm1.ann1.LMB138 Arachis hypogaea HOM05D004053 ORTHO05D005065 9.8e-07 58.5 52 61.5
C08p10690 Brassica napus HOM05D004053 ORTHO05D031745 1.7e-06 57.8 69 43.5
BolC8t48741H Brassica oleracea HOM05D004053 ORTHO05D031745 1.7e-06 57.8 69 43.5
BcaC02g12834 Brassica carinata HOM05D004053 ORTHO05D005065 4.9e-06 56.2 65 46.2
C04p39350 Brassica napus HOM05D004053 ORTHO05D005065 4.9e-06 56.2 65 46.2
BolC4t25502H Brassica oleracea HOM05D004053 ORTHO05D005065 4.9e-06 56.2 65 46.2


User provided reference genes

Program Settings