Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE11G0792 Ceratophyllum demersum HOM05D005022 ORTHO05D002200 1.9e-58 228.8 105 100.0
CDE02G1391 Ceratophyllum demersum HOM05D005022 ORTHO05D002200 1.3e-25 119.8 119 60.5
Lalb_Chr15g0086431 Lupinus albus HOM05D005022 ORTHO05D002200 7.7e-15 84.0 121 46.3
Lalb_Chr01g0010761 Lupinus albus HOM05D005022 ORTHO05D002200 2.2e-14 82.4 121 45.5
Os12g0129000 Oryza sativa ssp. japonica HOM05D005022 ORTHO05D002200 5.0e-14 81.3 118 47.5
AUR62026682 Chenopodium quinoa HOM05D005022 ORTHO05D002200 1.5e-13 79.7 127 44.9
AUR62040591 Chenopodium quinoa HOM05D005022 ORTHO05D002200 1.5e-13 79.7 127 44.9
MD17G1053800 Malus domestica HOM05D005022 ORTHO05D002200 1.9e-13 79.3 115 45.2
Phvul.002G129000 Phaseolus vulgaris HOM05D005022 ORTHO05D002200 1.9e-13 79.3 122 49.2
MD09G1056300 Malus domestica HOM05D005022 ORTHO05D002200 3.2e-13 78.6 116 44.0
Ca_00478_v3 Cicer arietinum L. HOM05D005022 ORTHO05D002200 4.2e-13 78.2 121 47.1
Haze_14492 Corylus avellana HOM05D005022 ORTHO05D002200 4.2e-13 78.2 118 45.8
QL02p084958 Quercus lobata HOM05D005022 ORTHO05D002200 5.5e-13 77.8 118 44.9
Oeu023719.1 Olea europaea HOM05D005022 ORTHO05D002200 9.5e-13 77.0 119 44.5
arahy.Tifrunner.gnm1.ann1.72TST8 Arachis hypogaea HOM05D005022 ORTHO05D002200 1.6e-12 76.3 121 44.6
arahy.Tifrunner.gnm1.ann1.I9NK4S Arachis hypogaea HOM05D005022 ORTHO05D002200 1.6e-12 76.3 121 44.6
Glyma.15G086500 Glycine max HOM05D005022 ORTHO05D002200 1.6e-12 76.3 121 45.5
Lj6g0010384 Lotus japonicus HOM05D005022 ORTHO05D002200 1.6e-12 76.3 121 47.9
CiPaw.03G278100 Carya illinoinensis HOM05D005022 ORTHO05D002200 2.1e-12 75.9 122 45.1
CsaV3_5G038280 Cucumis sativus L. HOM05D005022 ORTHO05D002200 2.1e-12 75.9 118 44.1
Prupe.3G262800 Prunus persica HOM05D005022 ORTHO05D002200 2.1e-12 75.9 116 44.0
THA.LOC104823026 Tarenaya hassleriana HOM05D005022 ORTHO05D002200 2.1e-12 75.9 121 42.1
Sed0010256 Sechium edule HOM05D005022 ORTHO05D002200 2.7e-12 75.5 117 44.4
Duzib147G1375 Durio zibethinus HOM05D005022 ORTHO05D002200 3.6e-12 75.1 118 41.5
Cc07_g03690 Coffea canephora HOM05D005022 ORTHO05D002200 4.7e-12 74.7 118 41.5
COL.COLO4_12232 Corchorus olitorius HOM05D005022 ORTHO05D002200 4.7e-12 74.7 121 43.0
Glyma.13G225600 Glycine max HOM05D005022 ORTHO05D002200 4.7e-12 74.7 117 46.2
Hma1.2p1_0325F.1_g125800 Hydrangea macrophylla HOM05D005022 ORTHO05D002200 4.7e-12 74.7 123 43.9
Sc11g0004910 Simmondsia chinensis HOM05D005022 ORTHO05D002200 4.7e-12 74.7 127 41.7
THA.LOC104823702 Tarenaya hassleriana HOM05D005022 ORTHO05D002200 4.7e-12 74.7 119 42.9
BcaC03g17565 Brassica carinata HOM05D005022 ORTHO05D002200 6.1e-12 74.3 121 42.1
C02p55350 Brassica napus HOM05D005022 ORTHO05D002200 6.1e-12 74.3 121 42.1
BolC2t11592H Brassica oleracea HOM05D005022 ORTHO05D002200 6.1e-12 74.3 121 42.1
Eucgr.I02005 Eucalyptus grandis HOM05D005022 ORTHO05D002200 6.1e-12 74.3 119 42.9
Medtr2g017920 Medicago truncatula HOM05D005022 ORTHO05D002200 6.1e-12 74.3 121 47.1
Sed0016737 Sechium edule HOM05D005022 ORTHO05D002200 6.1e-12 74.3 117 43.6
CANSAT64G2922 Cannabis sativa HOM05D005022 ORTHO05D002200 8.0e-12 73.9 121 44.6
FAN09G0227 Fragaria x ananassa HOM05D005022 ORTHO05D002200 8.0e-12 73.9 116 44.0
Rhsim07G0089800 Rhododendron simsii HOM05D005022 ORTHO05D002200 8.0e-12 73.9 118 44.1
RcHm_v2.0_Chr2g0167041 Rosa chinensis HOM05D005022 ORTHO05D002200 8.0e-12 73.9 116 44.8
TPR.G4494 Trifolium pratense HOM05D005022 ORTHO05D002200 8.0e-12 73.9 121 46.3
TWI60G0052 Tripterygium wilfordii HOM05D005022 ORTHO05D002200 8.0e-12 73.9 121 40.5
VMungo0540G0520 Vigna mungo HOM05D005022 ORTHO05D002200 8.0e-12 73.9 119 46.2
Ciclev10013833m.g Citrus clementina HOM05D005022 ORTHO05D002200 1.0e-11 73.6 122 42.6
Lsat_1_v5_gn_2_89360 Lactuca sativa HOM05D005022 ORTHO05D002200 1.0e-11 73.6 118 41.5
Manes.06G037100 Manihot esculenta HOM05D005022 ORTHO05D002200 1.0e-11 73.6 116 42.2
Manes.08G085000 Manihot esculenta HOM05D005022 ORTHO05D002200 1.0e-11 73.6 116 42.2
BcaB07g30093 Brassica carinata HOM05D005022 ORTHO05D002200 1.4e-11 73.2 121 40.5
A02p36420 Brassica napus HOM05D005022 ORTHO05D002200 1.4e-11 73.2 127 40.2
BraA02t08639Z Brassica rapa HOM05D005022 ORTHO05D002200 1.4e-11 73.2 127 40.2
Dinv41801 Davidia involucrata HOM05D005022 ORTHO05D002200 1.4e-11 73.2 122 45.1
Thhalv10005146m.g Eutrema salsugineum HOM05D005022 ORTHO05D002200 1.4e-11 73.2 121 40.5
FvH4_6g47840 Fragaria vesca HOM05D005022 ORTHO05D002200 1.4e-11 73.2 116 44.0
FAN05G3245 Fragaria x ananassa HOM05D005022 ORTHO05D002200 1.4e-11 73.2 116 44.0
FAN14G5329 Fragaria x ananassa HOM05D005022 ORTHO05D002200 1.4e-11 73.2 116 44.0
PGR056G0006 Punica granatum HOM05D005022 ORTHO05D002200 1.4e-11 73.2 118 44.1
Gohir.A11G070800 Gossypium hirsutum HOM05D005022 ORTHO05D002200 1.8e-11 72.8 122 41.0
CiPaw.03G021600 Carya illinoinensis HOM05D005022 ORTHO05D002200 2.3e-11 72.4 122 44.3
ClCG09G017950 Citrullus lanatus HOM05D005022 ORTHO05D002200 2.3e-11 72.4 118 44.1
Gohir.D11G074700 Gossypium hirsutum HOM05D005022 ORTHO05D002200 2.3e-11 72.4 117 41.9
Lj3g0009973 Lotus japonicus HOM05D005022 ORTHO05D002200 2.3e-11 72.4 121 46.3
BcaC06g30883 Brassica carinata HOM05D005022 ORTHO05D002200 3.0e-11 72.0 118 40.7
Cc05_g15190 Coffea canephora HOM05D005022 ORTHO05D002200 3.0e-11 72.0 122 43.4
Sp2g17780 Schrenkiella parvula HOM05D005022 ORTHO05D002200 3.0e-11 72.0 125 40.8
Thecc.04G088000 Theobroma cacao HOM05D005022 ORTHO05D002200 3.0e-11 72.0 118 39.8
Ah.02g113030 Amaranthus hybridus HOM05D005022 ORTHO05D002200 4.0e-11 71.6 125 40.0
MELO3C022011.2 Cucumis melo HOM05D005022 ORTHO05D002200 4.0e-11 71.6 117 41.9
EL10Ac5g10898 Beta vulgaris HOM05D005022 ORTHO05D002200 5.2e-11 71.2 128 40.6
Cpa.g.sc14.131 Carica papaya HOM05D005022 ORTHO05D002200 5.2e-11 71.2 120 40.0
AUR62008331 Chenopodium quinoa HOM05D005022 ORTHO05D002200 5.2e-11 71.2 124 41.1
PSO063G1170 Papaver somniferum HOM05D005022 ORTHO05D002200 5.2e-11 71.2 115 41.7
PSO063G2328 Papaver somniferum HOM05D005022 ORTHO05D002200 5.2e-11 71.2 115 41.7
Potri.006G053300 Populus trichocarpa HOM05D005022 ORTHO05D002200 5.2e-11 71.2 122 41.0
MSTRG.15466 Avicennia marina HOM05D005022 ORTHO05D002200 6.8e-11 70.9 119 39.5
CSS0002409 Camellia sinensis var. sinensis HOM05D005022 ORTHO05D002200 6.8e-11 70.9 118 44.1
AUR62021768 Chenopodium quinoa HOM05D005022 ORTHO05D002200 8.8e-11 70.5 124 40.3
Manes.14G112300 Manihot esculenta HOM05D005022 ORTHO05D002200 8.8e-11 70.5 121 43.0
Rhsim10G0035600 Rhododendron simsii HOM05D005022 ORTHO05D002200 8.8e-11 70.5 115 44.3
Actinidia26238 Actinidia chinensis HOM05D005022 ORTHO05D002200 1.2e-10 70.1 113 44.2
Carub.0005s0790 Capsella rubella HOM05D005022 ORTHO05D002200 1.2e-10 70.1 122 40.2
PGR004G0139 Punica granatum HOM05D005022 ORTHO05D002200 1.2e-10 70.1 125 41.6
Phvul.006G171600 Phaseolus vulgaris HOM05D005022 ORTHO05D002200 1.5e-10 69.7 119 45.4
TAR629G0139 Trochodendron aralioides HOM05D005022 ORTHO05D002200 1.5e-10 69.7 120 43.3
CARHR152330 Cardamine hirsuta HOM05D005022 ORTHO05D002200 2.0e-10 69.3 123 39.0
Hund02686 Selenicereus undatus HOM05D005022 ORTHO05D002200 2.0e-10 69.3 123 39.8
ECA238G3567 Erigeron canadensis HOM05D005022 ORTHO05D002200 2.6e-10 68.9 117 42.7
MSTRG.3339 Avicennia marina HOM05D005022 ORTHO05D002200 3.4e-10 68.6 119 38.7
unitig_748.g7266 Utricularia gibba HOM05D005022 ORTHO05D002200 3.4e-10 68.6 115 40.9
Aa31LG2G4070 Aethionema arabicum HOM05D005022 ORTHO05D002200 4.4e-10 68.2 122 39.3
BcaC06g33675 Brassica carinata HOM05D005022 ORTHO05D002200 4.4e-10 68.2 120 40.0
BolC7t44329H Brassica oleracea HOM05D005022 ORTHO05D002200 4.4e-10 68.2 120 40.0
DCAR_026919 Daucus carota HOM05D005022 ORTHO05D002200 4.4e-10 68.2 117 39.3
Gorai.007G080300 Gossypium raimondii HOM05D005022 ORTHO05D002200 4.4e-10 68.2 62 54.8
Solyc07g065740.3 Solanum lycopersicum HOM05D005022 ORTHO05D002200 4.4e-10 68.2 126 39.7
Sopen07g033950 Solanum pennellii HOM05D005022 ORTHO05D002200 4.4e-10 68.2 126 39.7
AL5G19080 Arabidopsis lyrata HOM05D005022 ORTHO05D002200 5.7e-10 67.8 122 39.3
CAN.G623.29 Capsicum annuum HOM05D005022 ORTHO05D002200 5.7e-10 67.8 122 41.0
DCAR_011073 Daucus carota HOM05D005022 ORTHO05D002200 5.7e-10 67.8 121 41.3
PGSC0003DMG400022162 Solanum tuberosum HOM05D005022 ORTHO05D002200 5.7e-10 67.8 122 40.2
Sabra06G0037700 Salix brachista HOM05D005022 ORTHO05D002200 7.5e-10 67.4 119 41.2
TWI34G0511 Tripterygium wilfordii HOM05D005022 ORTHO05D002200 7.5e-10 67.4 118 39.8
TWI34G1044 Tripterygium wilfordii HOM05D005022 ORTHO05D002200 7.5e-10 67.4 118 39.8
AT3G29170 Arabidopsis thaliana HOM05D005022 ORTHO05D002200 9.8e-10 67.0 122 39.3
BraA06t26924Z Brassica rapa HOM05D005022 ORTHO05D002200 9.8e-10 67.0 121 39.7
HanXRQChr17g0546151 Helianthus annuus HOM05D005022 ORTHO05D002200 1.3e-09 66.6 116 40.5
HPP92_007847 Vanilla planifolia HOM05D005022 ORTHO05D002200 1.7e-09 66.2 119 41.2
CSS0006095 Camellia sinensis var. sinensis HOM05D005022 ORTHO05D002200 2.2e-09 65.9 113 41.6
Migut.K01301 Erythranthe guttata HOM05D005022 ORTHO05D002200 2.2e-09 65.9 121 38.8
Nitab4.5_0004583g0030 Nicotiana tabacum HOM05D005022 ORTHO05D002200 2.8e-09 65.5 122 40.2
Nitab4.5_0013922g0020 Nicotiana tabacum HOM05D005022 ORTHO05D002200 2.8e-09 65.5 122 40.2
Hund09378 Selenicereus undatus HOM05D005022 ORTHO05D002200 3.7e-09 65.1 128 39.1
vmacro16388 Vaccinium macrocarpon HOM05D005022 ORTHO05D002200 6.3e-09 64.3 115 40.9
CANSAT78G1165 Cannabis sativa HOM05D005022 ORTHO05D002200 1.8e-08 62.8 121 40.5
Lsat_1_v5_gn_3_99860 Lactuca sativa HOM05D005022 ORTHO05D002200 1.8e-08 62.8 121 38.0
Lj2g0004380 Lotus japonicus HOM05D005022 ORTHO05D002200 1.8e-08 62.8 112 45.5
Lj3g0011454 Lotus japonicus HOM05D005022 ORTHO05D002200 1.8e-08 62.8 112 45.5
SGA_v2.0_scaffold236G43759 Striga asiatica HOM05D005022 ORTHO05D002200 2.4e-08 62.4 122 36.9
Aqoxy5G02989 Aquilegia oxysepala HOM05D005022 ORTHO05D002200 5.4e-08 61.2 116 37.9
Nn4g23286 Nelumbo nucifera HOM05D005022 ORTHO05D002200 7.0e-08 60.8 60 56.7
SGA_v2.0_scaffold1515G53975 Striga asiatica HOM05D005022 ORTHO05D002200 7.0e-08 60.8 122 36.1
GSVIVG01011468001 Vitis vinifera HOM05D005022 ORTHO05D002200 1.2e-07 60.1 112 42.0
Dinv33790 Davidia involucrata HOM05D005022 ORTHO05D002200 1.6e-07 59.7 33 75.8
CSS0007983 Camellia sinensis var. sinensis HOM05D005022 ORTHO05D002200 2.7e-07 58.9 60 51.7
Mapoly0059s0090 Marchantia polymorpha HOM05D005022 ORTHO05D002200 2.7e-07 58.9 123 36.6
Os11g0132400 Oryza sativa ssp. japonica HOM05D005022 ORTHO05D002200 4.5e-07 58.2 54 55.6
Pp3c18_10200 Physcomitrium patens HOM05D005022 ORTHO05D002200 1.3e-06 56.6 67 49.3
ECA246G0186 Erigeron canadensis HOM05D005022 ORTHO05D002200 2.3e-06 55.8 31 74.2
HanXRQChr15g0473111 Helianthus annuus HOM05D005022 ORTHO05D002200 2.9e-06 55.5 113 35.4
CBR_g61519 Chara braunii HOM05D005022 ORTHO05D002200 6.6e-06 54.3 56 48.2


User provided reference genes

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