Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE11G0582 Ceratophyllum demersum HOM05D005100 ORTHO05D005607 5.0e-69 264.2 126 100.0
Nn1g01053 Nelumbo nucifera HOM05D005100 ORTHO05D005607 9.8e-57 223.4 126 82.5
Solyc08g078860.4 Solanum lycopersicum HOM05D005100 ORTHO05D005607 9.8e-57 223.4 126 84.1
Sopen08g027330 Solanum pennellii HOM05D005100 ORTHO05D005607 9.8e-57 223.4 126 84.1
Lalb_Chr05g0225721 Lupinus albus HOM05D005100 ORTHO05D005607 1.7e-56 222.6 126 82.5
MSTRG.12083 Avicennia marina HOM05D005100 ORTHO05D005607 2.2e-56 222.2 126 82.5
Manes.01G079000 Manihot esculenta HOM05D005100 ORTHO05D005607 2.2e-56 222.2 126 82.5
Manes.02G037900 Manihot esculenta HOM05D005100 ORTHO05D005607 2.2e-56 222.2 126 81.7
Nn6g34007 Nelumbo nucifera HOM05D005100 ORTHO05D005607 2.9e-56 221.9 126 82.5
Thecc.03G254700 Theobroma cacao HOM05D005100 ORTHO05D005607 3.7e-56 221.5 126 82.5
Lalb_Chr09g0334171 Lupinus albus HOM05D005100 ORTHO05D005607 4.9e-56 221.1 126 82.5
SGA_v2.0_scaffold146G36159 Striga asiatica HOM05D005100 ORTHO05D005607 4.9e-56 221.1 126 81.7
Cpa.g.sc276.5 Carica papaya HOM05D005100 ORTHO05D005607 8.3e-56 220.3 126 82.5
PGR042G3212 Punica granatum HOM05D005100 ORTHO05D005607 8.3e-56 220.3 126 81.7
QL12p012809 Quercus lobata HOM05D005100 ORTHO05D005607 1.4e-55 219.5 125 82.4
CiPaw.11G152200 Carya illinoinensis HOM05D005100 ORTHO05D005607 1.8e-55 219.2 125 81.6
unitig_736.g22564 Utricularia gibba HOM05D005100 ORTHO05D005607 1.8e-55 219.2 126 81.7
arahy.Tifrunner.gnm1.ann1.1R27RR Arachis hypogaea HOM05D005100 ORTHO05D005607 2.4e-55 218.8 126 81.0
CAN.G1218.6 Capsicum annuum HOM05D005100 ORTHO05D005607 4.1e-55 218.0 126 81.0
MD17G1263200 Malus domestica HOM05D005100 ORTHO05D005607 4.1e-55 218.0 126 81.7
Phvul.003G219300 Phaseolus vulgaris HOM05D005100 ORTHO05D005607 4.1e-55 218.0 126 81.0
TWI60G0435 Tripterygium wilfordii HOM05D005100 ORTHO05D005607 5.4e-55 217.6 127 81.9
TWI15G0944 Tripterygium wilfordii HOM05D005100 ORTHO05D005607 7.0e-55 217.2 127 81.1
CSS0026368 Camellia sinensis var. sinensis HOM05D005100 ORTHO05D005607 9.2e-55 216.9 126 82.5
Glyma.05G058000 Glycine max HOM05D005100 ORTHO05D005607 9.2e-55 216.9 126 81.0
Nitab4.5_0007493g0020 Nicotiana tabacum HOM05D005100 ORTHO05D005607 9.2e-55 216.9 126 81.7
Phvul.001G061600 Phaseolus vulgaris HOM05D005100 ORTHO05D005607 9.2e-55 216.9 126 81.0
SalBow4G2670 Salvia bowleyana HOM05D005100 ORTHO05D005607 9.2e-55 216.9 126 81.0
Ca_21953_v3 Cicer arietinum L. HOM05D005100 ORTHO05D005607 1.2e-54 216.5 126 81.0
Migut.A00959 Erythranthe guttata HOM05D005100 ORTHO05D005607 1.2e-54 216.5 126 81.0
Eucgr.E00445 Eucalyptus grandis HOM05D005100 ORTHO05D005607 1.2e-54 216.5 126 81.7
TAR374G1281 Trochodendron aralioides HOM05D005100 ORTHO05D005607 1.2e-54 216.5 126 81.7
arahy.Tifrunner.gnm1.ann1.CZL3S8 Arachis hypogaea HOM05D005100 ORTHO05D005607 1.6e-54 216.1 124 79.8
MELO3C013951.2 Cucumis melo HOM05D005100 ORTHO05D005607 1.6e-54 216.1 125 79.2
CsaV3_3G002850 Cucumis sativus L. HOM05D005100 ORTHO05D005607 1.6e-54 216.1 125 79.2
Gohir.D12G221900 Gossypium hirsutum HOM05D005100 ORTHO05D005607 1.6e-54 216.1 126 80.2
Prupe.3G111600 Prunus persica HOM05D005100 ORTHO05D005607 1.6e-54 216.1 126 80.2
Sed0015074 Sechium edule HOM05D005100 ORTHO05D005607 2.0e-54 215.7 125 79.2
Duzib084G0333 Durio zibethinus HOM05D005100 ORTHO05D005607 2.7e-54 215.3 126 81.0
THA.LOC104806732 Tarenaya hassleriana HOM05D005100 ORTHO05D005607 2.7e-54 215.3 126 79.4
Gohir.D08G190100 Gossypium hirsutum HOM05D005100 ORTHO05D005607 4.6e-54 214.5 126 80.2
Nitab4.5_0000312g0250 Nicotiana tabacum HOM05D005100 ORTHO05D005607 5.9e-54 214.2 126 81.0
Cc08_g12730 Coffea canephora HOM05D005100 ORTHO05D005607 7.8e-54 213.8 126 78.6
Glyma.17G140500 Glycine max HOM05D005100 ORTHO05D005607 7.8e-54 213.8 126 80.2
Potri.001G122200 Populus trichocarpa HOM05D005100 ORTHO05D005607 7.8e-54 213.8 126 79.4
Hund14589 Selenicereus undatus HOM05D005100 ORTHO05D005607 7.8e-54 213.8 125 76.8
Duzib205G1156 Durio zibethinus HOM05D005100 ORTHO05D005607 1.0e-53 213.4 124 80.6
Gorai.008G237800 Gossypium raimondii HOM05D005100 ORTHO05D005607 1.0e-53 213.4 126 79.4
Medtr4g101140 Medicago truncatula HOM05D005100 ORTHO05D005607 1.0e-53 213.4 126 80.2
Gohir.A12G219800 Gossypium hirsutum HOM05D005100 ORTHO05D005607 1.3e-53 213.0 124 79.8
Rhsim07G0106400 Rhododendron simsii HOM05D005100 ORTHO05D005607 1.3e-53 213.0 126 79.4
Hma1.2p1_1414F.1_g281930 Hydrangea macrophylla HOM05D005100 ORTHO05D005607 1.7e-53 212.6 127 81.9
Peaxi162Scf00002g01216 Petunia axillaris HOM05D005100 ORTHO05D005607 2.3e-53 212.2 126 80.2
Rhsim07G0107000 Rhododendron simsii HOM05D005100 ORTHO05D005607 2.3e-53 212.2 125 78.4
CANSAT21G2488 Cannabis sativa HOM05D005100 ORTHO05D005607 2.9e-53 211.8 126 80.2
Ciclev10022867m.g Citrus clementina HOM05D005100 ORTHO05D005607 3.9e-53 211.5 126 79.4
FvH4_6g27850 Fragaria vesca HOM05D005100 ORTHO05D005607 3.9e-53 211.5 126 79.4
FAN02G0882 Fragaria x ananassa HOM05D005100 ORTHO05D005607 3.9e-53 211.5 126 79.4
CARHR173780 Cardamine hirsuta HOM05D005100 ORTHO05D005607 5.0e-53 211.1 126 80.2
Cfa012751 Carpinus fangiana HOM05D005100 ORTHO05D005607 5.0e-53 211.1 126 80.2
Haze_07879 Corylus avellana HOM05D005100 ORTHO05D005607 5.0e-53 211.1 126 80.2
Gohir.A08G171800 Gossypium hirsutum HOM05D005100 ORTHO05D005607 5.0e-53 211.1 126 79.4
TPR.G37704 Trifolium pratense HOM05D003577 ORTHO05D005607 5.0e-53 211.1 126 79.4
Lsat_1_v5_gn_6_2981 Lactuca sativa HOM05D005100 ORTHO05D005607 6.6e-53 210.7 126 79.4
Thhalv10001074m.g Eutrema salsugineum HOM05D005100 ORTHO05D005607 8.6e-53 210.3 126 81.0
BcaC03g16973 Brassica carinata HOM05D005100 ORTHO05D005607 1.1e-52 209.9 126 80.2
A02p31440 Brassica napus HOM05D000285 ORTHO05D005607 1.1e-52 209.9 126 80.2
C02p48770 Brassica napus HOM05D000285 ORTHO05D005607 1.1e-52 209.9 126 80.2
BolC2t10971H Brassica oleracea HOM05D005100 ORTHO05D005607 1.1e-52 209.9 126 80.2
BraA02t08146Z Brassica rapa HOM05D005100 ORTHO05D005607 1.1e-52 209.9 126 80.2
Psat4g070000 Pisum sativum HOM05D005100 ORTHO05D005607 1.1e-52 209.9 126 78.6
Sp2g12300 Schrenkiella parvula HOM05D005100 ORTHO05D005607 1.1e-52 209.9 126 80.2
BraA06t27367Z Brassica rapa HOM05D005100 ORTHO05D005607 1.5e-52 209.5 126 81.0
FAN05G1737 Fragaria x ananassa HOM05D005100 ORTHO05D005607 1.5e-52 209.5 125 78.4
HanXRQChr13g0396371 Helianthus annuus HOM05D005100 ORTHO05D005607 1.5e-52 209.5 126 77.8
RcHm_v2.0_Chr2g0131201 Rosa chinensis HOM05D005100 ORTHO05D005607 1.5e-52 209.5 126 78.6
A06p44960 Brassica napus HOM05D005100 ORTHO05D005607 1.9e-52 209.1 126 81.0
BolC7t43663H Brassica oleracea HOM05D005100 ORTHO05D005607 1.9e-52 209.1 126 81.0
BcaC04g21614 Brassica carinata HOM05D005100 ORTHO05D005607 2.5e-52 208.8 126 81.0
BcaC06g34239 Brassica carinata HOM05D000285 ORTHO05D005607 2.5e-52 208.8 126 80.2
A09p23130 Brassica napus HOM05D000285 ORTHO05D005607 2.5e-52 208.8 126 81.0
FAN14G3965 Fragaria x ananassa HOM05D005100 ORTHO05D005607 2.5e-52 208.8 125 78.4
Gorai.004G200300 Gossypium raimondii HOM05D005100 ORTHO05D005607 2.5e-52 208.8 127 78.7
BcaC06g31372 Brassica carinata HOM05D005100 ORTHO05D005607 3.3e-52 208.4 126 80.2
Aa31LG9G5470 Aethionema arabicum HOM05D005100 ORTHO05D005607 4.3e-52 208.0 126 79.4
BcaB07g30770 Brassica carinata HOM05D005100 ORTHO05D005607 4.3e-52 208.0 126 80.2
C07p31220 Brassica napus HOM05D000285 ORTHO05D005607 7.3e-52 207.2 126 80.2
AL8G10400 Arabidopsis lyrata HOM05D005100 ORTHO05D005607 1.2e-51 206.5 126 80.2
ClCG10G002830 Citrullus lanatus HOM05D005100 ORTHO05D005607 1.2e-51 206.5 140 71.4
Carub.0008s0021 Capsella rubella HOM05D005100 ORTHO05D005607 2.8e-51 205.3 126 79.4
Lj2C215G2 Lonicera japonica HOM05D005100 ORTHO05D005607 2.8e-51 205.3 126 80.2
AT5G47570 Arabidopsis thaliana HOM05D005100 ORTHO05D005607 3.6e-51 204.9 126 79.4
Atru.chr9.1362 Acer truncatum HOM05D005100 ORTHO05D005607 8.0e-51 203.8 126 77.8
CDE02G1099 Ceratophyllum demersum HOM05D005100 ORTHO05D005607 1.4e-50 203.0 141 74.5
Aqoxy7G00738 Aquilegia oxysepala HOM05D005100 ORTHO05D005607 1.8e-50 202.6 126 74.6
ECA233G3117 Erigeron canadensis HOM05D005100 ORTHO05D005607 1.8e-50 202.6 114 81.6
ATR0105G007 Amborella trichopoda HOM05D005100 ORTHO05D005607 4.0e-50 201.4 126 75.4
PSO478G0216 Papaver somniferum HOM05D005100 ORTHO05D005607 6.8e-50 200.7 126 77.0
BcaC06g31367 Brassica carinata HOM05D005100 ORTHO05D005607 8.9e-50 200.3 127 78.7
MD09G1234000 Malus domestica HOM05D005100 ORTHO05D005607 1.5e-49 199.5 126 73.8
PSO017G3938 Papaver somniferum HOM05D005100 ORTHO05D005607 2.6e-49 198.7 126 75.4
Lj4g0006403 Lotus japonicus HOM05D005100 ORTHO05D005607 3.7e-48 194.9 126 73.0
CiPaw.12G108400 Carya illinoinensis HOM05D005100 ORTHO05D005607 6.4e-48 194.1 126 73.8
Os10g0551600 Oryza sativa ssp. japonica HOM05D005100 ORTHO05D005607 6.4e-48 194.1 126 70.6
Actinidia02116 Actinidia chinensis HOM05D005100 ORTHO05D005607 1.4e-47 193.0 124 73.4
HPP92_012813 Vanilla planifolia HOM05D005100 ORTHO05D005607 2.4e-47 192.2 126 73.0
Zm00001eb391700 Zea mays HOM05D005100 ORTHO05D005607 4.1e-47 191.4 126 71.4
THA.LOC104798464 Tarenaya hassleriana HOM05D005100 ORTHO05D005607 8.6e-45 183.7 112 76.8
COL.COLO4_37195 Corchorus olitorius HOM05D005100 ORTHO05D005607 1.5e-44 183.0 107 79.4
Dinv21616 Davidia involucrata HOM05D005100 ORTHO05D005607 1.9e-44 182.6 107 79.4
MBI11_g37068_MAGBIO Magnolia biondii HOM05D005100 ORTHO05D005607 2.5e-44 182.2 107 78.5
PGSC0003DMG400004750 Solanum tuberosum HOM05D005100 ORTHO05D005607 3.3e-44 181.8 107 80.4
Zm00001eb023020 Zea mays HOM05D005100 ORTHO05D005607 4.3e-44 181.4 126 66.7
Actinidia05198 Actinidia chinensis HOM05D005100 ORTHO05D005607 9.5e-44 180.3 93 86.0
Oeu011653.1 Olea europaea HOM05D005100 ORTHO05D005607 1.6e-43 179.5 107 78.5
Sed0017508 Sechium edule HOM05D005100 ORTHO05D005607 1.6e-43 179.5 107 77.6
MBI02_g00644_MAGBIO Magnolia biondii HOM05D005100 ORTHO05D005607 2.1e-43 179.1 107 76.6
Oeu006279.1 Olea europaea HOM05D005100 ORTHO05D005607 3.6e-43 178.3 107 77.6
Dinv39123 Davidia involucrata HOM05D005100 ORTHO05D005607 8.1e-43 177.2 94 86.2
vmacro14093 Vaccinium macrocarpon HOM05D005100 ORTHO05D005607 8.1e-43 177.2 107 77.6
Sabra01G0094100 Salix brachista HOM05D005100 ORTHO05D005607 1.4e-42 176.4 107 77.6
Haze_07877 Corylus avellana HOM05D005100 ORTHO05D005607 2.3e-42 175.6 107 78.5
Ah.12g056670 Amaranthus hybridus HOM05D005100 ORTHO05D005607 8.9e-42 173.7 94 83.0
AUR62007498 Chenopodium quinoa HOM05D005100 ORTHO05D005607 7.5e-41 170.6 104 76.0
BolC9t55849H Brassica oleracea HOM05D000285 ORTHO05D005607 3.7e-40 168.3 112 75.0
PGSC0003DMG400004799 Solanum tuberosum HOM05D005100 ORTHO05D005607 6.4e-40 167.5 139 62.6
BraA09t37916Z Brassica rapa HOM05D000285 ORTHO05D005607 1.1e-39 166.8 107 77.6
C09p29860 Brassica napus HOM05D000285 ORTHO05D005607 1.9e-39 166.0 112 74.1
SEGI_05699 Sequoiadendron giganteum HOM05D005100 ORTHO05D005607 1.9e-39 166.0 122 65.6
DCAR_027789 Daucus carota HOM05D005100 ORTHO05D005607 7.1e-39 164.1 107 73.8
MBI02_g36452_MAGBIO Magnolia biondii HOM05D005100 ORTHO05D005607 3.9e-37 158.3 124 65.3
COL.COLO4_37193 Corchorus olitorius HOM05D005100 ORTHO05D005607 4.7e-35 151.4 126 61.1
EL10Ac5g13047 Beta vulgaris HOM05D005100 ORTHO05D005607 5.8e-33 144.4 126 59.5
Pp3c20_8820 Physcomitrium patens HOM05D005100 ORTHO05D005607 1.4e-31 139.8 102 61.8
GSVIVG01001301001 Vitis vinifera HOM05D005100 ORTHO05D005607 3.2e-31 138.7 75 81.3
Mapoly0086s0019 Marchantia polymorpha HOM05D005100 ORTHO05D005607 9.2e-31 137.1 104 62.5
SalBow8G2639 Salvia bowleyana HOM05D005100 ORTHO05D005607 1.4e-26 123.2 75 77.3
Sc22g0000770 Simmondsia chinensis HOM05D005100 ORTHO05D005607 2.4e-26 122.5 79 70.9
Hund11615 Selenicereus undatus HOM05D005100 ORTHO05D005607 2.6e-25 119.0 126 50.0
RcHm_v2.0_Chr1g0345201 Rosa chinensis HOM05D005100 ORTHO05D005607 9.9e-25 117.1 79 67.1
FAN05G0157 Fragaria x ananassa HOM05D005100 ORTHO05D005607 6.0e-22 107.8 87 60.9
RcHm_v2.0_Chr2g0112371 Rosa chinensis HOM05D005100 ORTHO05D005607 1.3e-21 106.7 66 74.2
RcHm_v2.0_Chr2g0109601 Rosa chinensis HOM05D005100 ORTHO05D005607 1.7e-21 106.3 67 74.6
AagrBONN_evm.TU.Sc2ySwM_117.677 Anthoceros agrestis HOM05D005100 ORTHO05D005607 3.0e-21 105.5 104 48.1
FAN09G2413 Fragaria x ananassa HOM05D005100 ORTHO05D005607 3.9e-21 105.1 87 58.6
TWI81G0033 Tripterygium wilfordii HOM05D000001 ORTHO05D011365 3.9e-21 105.1 63 74.6
FvH4_6g09560 Fragaria vesca HOM05D005100 ORTHO05D005607 1.3e-19 100.1 89 59.6
RcHm_v2.0_Chr6g0244011 Rosa chinensis HOM05D005100 ORTHO05D005607 1.2e-17 93.6 75 56.0
MCO13G524 Micromonas commoda HOM05D005100 ORTHO05D005607 7.6e-17 90.9 119 44.5
RcHm_v2.0_Chr1g0326801 Rosa chinensis HOM05D005100 ORTHO05D005607 1.1e-15 87.0 95 50.5
CBR_g50946 Chara braunii HOM05D005100 ORTHO05D005607 2.4e-15 85.9 78 53.8
RcHm_v2.0_Chr4g0420451 Rosa chinensis HOM05D005100 ORTHO05D005607 9.3e-15 84.0 63 61.9
Nitab4.5_0003531g0010 Nicotiana tabacum HOM05D005100 ORTHO05D005607 5.1e-13 78.2 43 79.1
RcHm_v2.0_Chr5g0051271 Rosa chinensis HOM05D005100 ORTHO05D005607 8.7e-13 77.4 69 56.5
MSTRG.12084 Avicennia marina HOM05D005349 ORTHO05D006901 1.7e-08 63.2 45 66.7
SMO119G0354 Selaginella moellendorffii HOM05D005100 ORTHO05D005607 1.4e-07 60.1 95 36.8
QL12p012843 Quercus lobata HOM05D005100 ORTHO05D005607 5.5e-07 58.2 42 69.0


User provided reference genes

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