Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE11G0498 Ceratophyllum demersum HOM05D003592 ORTHO05D004208 3.2e-71 271.6 129 100.0
CDE02G0247 Ceratophyllum demersum HOM05D003592 ORTHO05D004208 1.4e-37 159.8 100 74.0
Aqoxy161s001 Aquilegia oxysepala HOM05D003592 ORTHO05D004208 6.8e-21 104.4 127 48.8
Aqoxy161s002 Aquilegia oxysepala HOM05D003592 ORTHO05D004208 6.8e-21 104.4 127 48.8
Aqoxy3G02065 Aquilegia oxysepala HOM05D003592 ORTHO05D004208 6.8e-21 104.4 127 48.8
Aqoxy3G02066 Aquilegia oxysepala HOM05D003592 ORTHO05D004208 6.8e-21 104.4 127 48.8
TAR629G1675 Trochodendron aralioides HOM05D003592 ORTHO05D004208 4.4e-20 101.7 130 48.5
Nn3g19269 Nelumbo nucifera HOM05D003592 ORTHO05D004208 6.4e-19 97.8 136 47.1
MBI04_g29825_MAGBIO Magnolia biondii HOM05D000463 ORTHO05D013433 1.1e-18 97.1 97 51.5
MBI04_g21153_MAGBIO Magnolia biondii HOM05D003592 ORTHO05D004208 1.4e-18 96.7 131 44.3
Potri.013G081700 Populus trichocarpa HOM05D003592 ORTHO05D004208 3.2e-18 95.5 137 43.1
Manes.08G164900 Manihot esculenta HOM05D003592 ORTHO05D004208 1.6e-17 93.2 97 51.5
TPR.G37953 Trifolium pratense HOM05D003592 ORTHO05D004208 1.6e-17 93.2 97 47.4
DCAR_010550 Daucus carota HOM05D003592 ORTHO05D004208 3.9e-16 88.6 94 45.7
Sc19g0000280 Simmondsia chinensis HOM05D003592 ORTHO05D004208 5.0e-16 88.2 85 52.9
Dinv29178 Davidia involucrata HOM05D003592 ORTHO05D004208 6.6e-16 87.8 112 43.8
Solyc03g096840.4 Solanum lycopersicum HOM05D003592 ORTHO05D004208 6.6e-16 87.8 86 50.0
Atru.chr12.2033 Acer truncatum HOM05D003592 ORTHO05D004208 1.1e-15 87.0 104 45.2
COL.COLO4_08909 Corchorus olitorius HOM05D003592 ORTHO05D004208 1.1e-15 87.0 99 48.5
CDE01G0008 Ceratophyllum demersum HOM05D003592 ORTHO05D004208 1.5e-15 86.7 89 51.7
Manes.09G123900 Manihot esculenta HOM05D003592 ORTHO05D004208 1.5e-15 86.7 92 51.1
TWI32G0722 Tripterygium wilfordii HOM05D003592 ORTHO05D004208 1.5e-15 86.7 94 50.0
MD07G1305300 Malus domestica HOM05D003592 ORTHO05D004208 1.9e-15 86.3 105 43.8
Thecc.05G207700 Theobroma cacao HOM05D003592 ORTHO05D004208 1.9e-15 86.3 88 51.1
AUR62005925 Chenopodium quinoa HOM05D003592 ORTHO05D004208 2.5e-15 85.9 88 51.1
Peaxi162Scf01650g00057 Petunia axillaris HOM05D003592 ORTHO05D004208 2.5e-15 85.9 114 43.0
SGA_v2.0_scaffold165G38224 Striga asiatica HOM05D003592 ORTHO05D004208 2.5e-15 85.9 87 51.7
Ca_24466_v3 Cicer arietinum L. HOM05D003592 ORTHO05D004208 3.3e-15 85.5 90 46.7
ClCG07G017260 Citrullus lanatus HOM05D003592 ORTHO05D004208 3.3e-15 85.5 97 46.4
Duzib128G1398 Durio zibethinus HOM05D003592 ORTHO05D004208 3.3e-15 85.5 101 46.5
Sed0022386 Sechium edule HOM05D003592 ORTHO05D004208 3.3e-15 85.5 102 47.1
Sc13g0010720 Simmondsia chinensis HOM05D003592 ORTHO05D004208 3.3e-15 85.5 102 44.1
EL10Ac3g05109 Beta vulgaris HOM05D003592 ORTHO05D004208 5.6e-15 84.7 87 50.6
FAN03G1827 Fragaria x ananassa HOM05D003592 ORTHO05D004208 5.6e-15 84.7 98 45.9
CDE12G0763 Ceratophyllum demersum HOM05D003592 ORTHO05D004208 7.3e-15 84.3 87 50.6
MELO3C017620.2 Cucumis melo HOM05D003592 ORTHO05D004208 7.3e-15 84.3 101 44.6
Actinidia28268 Actinidia chinensis HOM05D003592 ORTHO05D004208 9.5e-15 84.0 119 42.9
ATR0829G020 Amborella trichopoda HOM05D003592 ORTHO05D004208 9.5e-15 84.0 89 47.2
CSS0018534 Camellia sinensis var. sinensis HOM05D003592 ORTHO05D004208 9.5e-15 84.0 129 39.5
AUR62018884 Chenopodium quinoa HOM05D003592 ORTHO05D004208 9.5e-15 84.0 88 48.9
LjContig00222g0008170 Lotus japonicus HOM05D003592 ORTHO05D004208 9.5e-15 84.0 82 50.0
Psat2g187520 Pisum sativum HOM05D003592 ORTHO05D004208 9.5e-15 84.0 103 43.7
PGR042G3489 Punica granatum HOM05D003592 ORTHO05D004208 9.5e-15 84.0 102 44.1
Rhsim09G0211800 Rhododendron simsii HOM05D003592 ORTHO05D004208 9.5e-15 84.0 85 49.4
PGSC0003DMG400000541 Solanum tuberosum HOM05D003592 ORTHO05D004208 9.5e-15 84.0 99 44.4
MELO3C005442.2 Cucumis melo HOM05D003592 ORTHO05D004208 1.2e-14 83.6 91 47.3
PGSC0003DMG400026933 Solanum tuberosum HOM05D003592 ORTHO05D004208 1.2e-14 83.6 99 42.4
vmacro10180 Vaccinium macrocarpon HOM05D003592 ORTHO05D004208 1.2e-14 83.6 87 48.3
Dinv17270 Davidia involucrata HOM05D003592 ORTHO05D004208 1.6e-14 83.2 95 45.3
Lsat_1_v5_gn_0_9420 Lactuca sativa HOM05D003592 ORTHO05D004208 1.6e-14 83.2 112 40.2
Medtr5g008210 Medicago truncatula HOM05D003592 ORTHO05D004208 1.6e-14 83.2 101 43.6
Actinidia34296 Actinidia chinensis HOM05D003592 ORTHO05D004208 2.1e-14 82.8 88 47.7
arahy.Tifrunner.gnm1.ann1.I6057L Arachis hypogaea HOM05D003592 ORTHO05D004208 2.1e-14 82.8 94 45.7
CiPaw.05G236400 Carya illinoinensis HOM05D003592 ORTHO05D004208 2.1e-14 82.8 106 46.2
Duzib177G0010 Durio zibethinus HOM05D003592 ORTHO05D004208 2.1e-14 82.8 100 47.0
FAN01G2998 Fragaria x ananassa HOM05D003592 ORTHO05D004208 2.1e-14 82.8 109 44.0
Glyma.01G230200 Glycine max HOM05D003592 ORTHO05D004208 2.1e-14 82.8 96 45.8
Actinidia18695 Actinidia chinensis HOM05D003592 ORTHO05D004208 2.8e-14 82.4 120 40.8
FvH4_7g33540 Fragaria vesca HOM05D003592 ORTHO05D004208 3.6e-14 82.0 109 44.0
Rhsim03G0219900 Rhododendron simsii HOM05D003592 ORTHO05D004208 3.6e-14 82.0 90 48.9
Sopen03g027580 Solanum pennellii HOM05D003592 ORTHO05D004208 3.6e-14 82.0 87 50.6
arahy.Tifrunner.gnm1.ann1.F45BIC Arachis hypogaea HOM05D003592 ORTHO05D004208 4.7e-14 81.6 94 44.7
Duzib106G0206 Durio zibethinus HOM05D003592 ORTHO05D004208 4.7e-14 81.6 98 46.9
Ciclev10013115m.g Citrus clementina HOM05D003592 ORTHO05D004208 6.2e-14 81.3 93 49.5
FAN10G0119 Fragaria x ananassa HOM05D003592 ORTHO05D004208 6.2e-14 81.3 109 43.1
FAN10G2200 Fragaria x ananassa HOM05D003592 ORTHO05D004208 6.2e-14 81.3 109 43.1
TWI34G2026 Tripterygium wilfordii HOM05D003592 ORTHO05D004208 6.2e-14 81.3 97 41.2
Oeu038117.1 Olea europaea HOM05D003592 ORTHO05D004208 8.0e-14 80.9 86 45.3
Phvul.002G036900 Phaseolus vulgaris HOM05D003592 ORTHO05D004208 8.0e-14 80.9 110 43.6
Prupe.2G323400 Prunus persica HOM05D003592 ORTHO05D004208 8.0e-14 80.9 102 42.2
vmacro06490 Vaccinium macrocarpon HOM05D003592 ORTHO05D004208 1.1e-13 80.5 89 47.2
HPP92_014744 Vanilla planifolia HOM05D003592 ORTHO05D004208 1.1e-13 80.5 94 46.8
Actinidia08730 Actinidia chinensis HOM05D003592 ORTHO05D004208 1.4e-13 80.1 86 47.7
Nitab4.5_0000021g0300 Nicotiana tabacum HOM05D003592 ORTHO05D004208 1.4e-13 80.1 99 45.5
Sabra13G0071400 Salix brachista HOM05D003592 ORTHO05D004208 1.4e-13 80.1 91 45.1
VMungo1215G0435 Vigna mungo HOM05D003592 ORTHO05D004208 1.4e-13 80.1 92 45.7
CSS0031198 Camellia sinensis var. sinensis HOM05D003592 ORTHO05D004208 1.8e-13 79.7 112 40.2
CsaV3_4G004470 Cucumis sativus L. HOM05D003592 ORTHO05D004208 1.8e-13 79.7 103 45.6
HanXRQChr09g0257211 Helianthus annuus HOM05D003592 ORTHO05D004208 1.8e-13 79.7 87 46.0
Nitab4.5_0002302g0040 Nicotiana tabacum HOM05D003592 ORTHO05D004208 1.8e-13 79.7 90 50.0
GSVIVG01024455001 Vitis vinifera HOM05D003592 ORTHO05D004208 1.8e-13 79.7 100 44.0
Migut.F00955 Erythranthe guttata HOM05D003592 ORTHO05D004208 2.3e-13 79.3 88 44.3
MSTRG.8553 Avicennia marina HOM05D003592 ORTHO05D004208 3.1e-13 79.0 86 45.3
Cpa.g.sc39.41 Carica papaya HOM05D003592 ORTHO05D004208 3.1e-13 79.0 93 49.5
Gorai.003G051000 Gossypium raimondii HOM05D003592 ORTHO05D004208 3.1e-13 79.0 130 40.0
CsaV3_5G005170 Cucumis sativus L. HOM05D003592 ORTHO05D004208 4.0e-13 78.6 91 42.9
Gohir.D03G049600 Gossypium hirsutum HOM05D003592 ORTHO05D004208 5.2e-13 78.2 130 40.0
HanXRQChr02g0041191 Helianthus annuus HOM05D003592 ORTHO05D004208 5.2e-13 78.2 86 45.3
Cc02_g00450 Coffea canephora HOM05D003592 ORTHO05D004208 6.8e-13 77.8 89 46.1
Cc05_g00720 Coffea canephora HOM05D003592 ORTHO05D004208 6.8e-13 77.8 89 46.1
RcHm_v2.0_Chr1g0383761 Rosa chinensis HOM05D003592 ORTHO05D004208 6.8e-13 77.8 113 41.6
Sed0007086 Sechium edule HOM05D003592 ORTHO05D004208 6.8e-13 77.8 107 44.9
Cfa015910 Carpinus fangiana HOM05D003592 ORTHO05D004208 8.9e-13 77.4 107 44.9
Gohir.A02G139000 Gossypium hirsutum HOM05D003592 ORTHO05D004208 8.9e-13 77.4 130 40.0
Oeu061060.1 Olea europaea HOM05D003592 ORTHO05D004208 8.9e-13 77.4 92 46.7
ClCG01G004940 Citrullus lanatus HOM05D003592 ORTHO05D004208 1.2e-12 77.0 100 41.0
Hma1.2p1_1235F.1_g269160 Hydrangea macrophylla HOM05D003592 ORTHO05D004208 1.2e-12 77.0 89 49.4
Oeu063742.2 Olea europaea HOM05D003592 ORTHO05D004208 1.2e-12 77.0 88 46.6
Os04g0598000 Oryza sativa ssp. japonica HOM05D003592 ORTHO05D004208 1.2e-12 77.0 88 46.6
SEGI_20020 Sequoiadendron giganteum HOM05D003592 ORTHO05D004208 1.2e-12 77.0 88 46.6
TAR375G0874 Trochodendron aralioides HOM05D003592 ORTHO05D004208 1.2e-12 77.0 82 47.6
AUR62028136 Chenopodium quinoa HOM05D003592 ORTHO05D004208 1.5e-12 76.6 79 48.1
CAN.G303.68 Capsicum annuum HOM05D003592 ORTHO05D004208 2.0e-12 76.3 87 44.8
MD01G1233000 Malus domestica HOM05D003592 ORTHO05D004208 2.0e-12 76.3 90 44.4
Peaxi162Scf00133g00111 Petunia axillaris HOM05D003592 ORTHO05D004208 2.0e-12 76.3 102 44.1
Ah.13g071180 Amaranthus hybridus HOM05D003592 ORTHO05D004208 2.6e-12 75.9 86 47.7
Haze_00584 Corylus avellana HOM05D003592 ORTHO05D004208 2.6e-12 75.9 94 47.9
ECA232G0247 Erigeron canadensis HOM05D003592 ORTHO05D004208 2.6e-12 75.9 86 44.2
Ah.04g157330 Amaranthus hybridus HOM05D003592 ORTHO05D004208 3.4e-12 75.5 90 46.7
AT3G03150 Arabidopsis thaliana HOM05D003592 ORTHO05D004208 3.4e-12 75.5 97 42.3
MSTRG.14 Avicennia marina HOM05D003592 ORTHO05D004208 4.4e-12 75.1 86 41.9
THA.LOC104827220 Tarenaya hassleriana HOM05D003592 ORTHO05D004208 4.4e-12 75.1 92 43.5
C09p60040 Brassica napus HOM05D003592 ORTHO05D004208 5.8e-12 74.7 92 42.4
AL3G12760 Arabidopsis lyrata HOM05D003592 ORTHO05D004208 7.5e-12 74.3 97 44.3
Glyma.11G013200 Glycine max HOM05D003592 ORTHO05D004208 7.5e-12 74.3 95 44.2
PSO063G2386 Papaver somniferum HOM05D003592 ORTHO05D004208 7.5e-12 74.3 98 44.9
Aa31LG5G13630 Aethionema arabicum HOM05D003592 ORTHO05D004208 9.8e-12 73.9 103 38.8
Carub.0003s0230 Capsella rubella HOM05D003592 ORTHO05D004208 1.3e-11 73.6 94 44.7
Nn1g02028 Nelumbo nucifera HOM05D003592 ORTHO05D004208 1.3e-11 73.6 88 50.0
Hund21085 Selenicereus undatus HOM05D003592 ORTHO05D004208 1.3e-11 73.6 92 45.7
CiPaw.06G020500 Carya illinoinensis HOM05D003592 ORTHO05D004208 1.7e-11 73.2 108 39.8
Nitab4.5_0006270g0010 Nicotiana tabacum HOM05D003592 ORTHO05D004208 1.7e-11 73.2 128 35.9
Zm00001eb430170 Zea mays HOM05D003592 ORTHO05D004208 1.7e-11 73.2 91 44.0
Thhalv10021768m.g Eutrema salsugineum HOM05D003592 ORTHO05D004208 2.9e-11 72.4 100 41.0
AT5G17165 Arabidopsis thaliana HOM05D003592 ORTHO05D004208 3.7e-11 72.0 91 39.6
CARHR196060 Cardamine hirsuta HOM05D003592 ORTHO05D004208 3.7e-11 72.0 91 40.7
Oeu055446.1 Olea europaea HOM05D003592 ORTHO05D004208 3.7e-11 72.0 81 49.4
Eucgr.A02956 Eucalyptus grandis HOM05D003592 ORTHO05D004208 4.9e-11 71.6 88 45.5
SalBow2G2852 Salvia bowleyana HOM05D003592 ORTHO05D004208 4.9e-11 71.6 86 43.0
BcaC05g30524 Brassica carinata HOM05D003592 ORTHO05D004208 8.3e-11 70.9 103 37.9
BolC9t58839H Brassica oleracea HOM05D003592 ORTHO05D004208 8.3e-11 70.9 92 40.2
Migut.F00107 Erythranthe guttata HOM05D003592 ORTHO05D004208 8.3e-11 70.9 92 40.2
Peaxi162Scf00815g00235 Petunia axillaris HOM05D003592 ORTHO05D004208 8.3e-11 70.9 127 37.0
unitig_62.g23842 Utricularia gibba HOM05D003592 ORTHO05D004208 8.3e-11 70.9 85 42.4
BolC5t35035H Brassica oleracea HOM05D003592 ORTHO05D004208 1.1e-10 70.5 94 40.4
Hma1.2p1_0758F.1_g213540 Hydrangea macrophylla HOM05D003592 ORTHO05D004208 1.1e-10 70.5 126 36.5
MSTRG.26939 Avicennia marina HOM05D003592 ORTHO05D004208 1.4e-10 70.1 82 45.1
A10p22230 Brassica napus HOM05D003592 ORTHO05D004208 1.4e-10 70.1 92 40.2
BraA10t44282Z Brassica rapa HOM05D003592 ORTHO05D004208 1.4e-10 70.1 92 40.2
Eucgr.A02954 Eucalyptus grandis HOM05D003592 ORTHO05D004208 1.4e-10 70.1 96 43.8
Solyc06g072840.3 Solanum lycopersicum HOM05D003592 ORTHO05D004208 1.4e-10 70.1 127 39.4
C05p63660 Brassica napus HOM05D003592 ORTHO05D004208 1.9e-10 69.7 97 39.2
Eucgr.K00100 Eucalyptus grandis HOM05D003592 ORTHO05D004208 1.9e-10 69.7 84 47.6
Nitab4.5_0000115g0310 Nicotiana tabacum HOM05D003592 ORTHO05D004208 1.9e-10 69.7 97 38.1
Peaxi162Scf00815g00250 Petunia axillaris HOM05D003592 ORTHO05D004208 1.9e-10 69.7 102 36.3
Sp3g02190 Schrenkiella parvula HOM05D003592 ORTHO05D004208 1.9e-10 69.7 94 40.4
PSO170G2965 Papaver somniferum HOM05D003592 ORTHO05D004208 2.4e-10 69.3 101 39.6
SGA_v2.0_scaffold18G08501 Striga asiatica HOM05D003592 ORTHO05D004208 2.4e-10 69.3 126 36.5
A05p44040 Brassica napus HOM05D003592 ORTHO05D004208 3.2e-10 68.9 91 42.9
BraSC90t46707Z Brassica rapa HOM05D003592 ORTHO05D004208 3.2e-10 68.9 91 42.9
Eucgr.L03660 Eucalyptus grandis HOM05D003592 ORTHO05D004208 4.1e-10 68.6 90 45.6
A03p33220 Brassica napus HOM05D003592 ORTHO05D004208 5.4e-10 68.2 94 41.5
C03p40480 Brassica napus HOM05D003592 ORTHO05D004208 5.4e-10 68.2 94 39.4
BolC3t16311H Brassica oleracea HOM05D003592 ORTHO05D004208 5.4e-10 68.2 94 39.4
BraA03t12494Z Brassica rapa HOM05D003592 ORTHO05D004208 5.4e-10 68.2 94 41.5
Carub.0006s1535 Capsella rubella HOM05D003592 ORTHO05D004208 5.4e-10 68.2 95 36.8
Sopen06g029220 Solanum pennellii HOM05D003592 ORTHO05D004208 5.4e-10 68.2 85 45.9
AL6G28210 Arabidopsis lyrata HOM05D003592 ORTHO05D004208 7.0e-10 67.8 95 38.9
BcaC01g04411 Brassica carinata HOM05D003592 ORTHO05D004208 7.0e-10 67.8 84 42.9
Sed0014997 Sechium edule HOM05D003592 ORTHO05D004208 7.0e-10 67.8 109 37.6
SEGI_37277 Sequoiadendron giganteum HOM05D003592 ORTHO05D004208 7.0e-10 67.8 86 46.5
CANSAT21G0974 Cannabis sativa HOM05D003592 ORTHO05D004208 9.2e-10 67.4 116 37.9
Thhalv10017419m.g Eutrema salsugineum HOM05D003592 ORTHO05D004208 9.2e-10 67.4 129 31.8
BcaB04g19374 Brassica carinata HOM05D003592 ORTHO05D004208 1.2e-09 67.0 84 42.9
BcaC04g18828 Brassica carinata HOM05D003592 ORTHO05D004208 1.2e-09 67.0 88 37.5
CARHR077170 Cardamine hirsuta HOM05D003592 ORTHO05D004208 1.2e-09 67.0 87 42.5
Nitab4.5_0003012g0010 Nicotiana tabacum HOM05D003592 ORTHO05D004208 1.2e-09 67.0 94 38.3
unitig_0.g1634 Utricularia gibba HOM05D003592 ORTHO05D004208 1.6e-09 66.6 111 31.5
HPP92_014706 Vanilla planifolia HOM05D003592 ORTHO05D004208 2.7e-09 65.9 56 57.1
Nitab4.5_0000115g0330 Nicotiana tabacum HOM05D003592 ORTHO05D004208 4.6e-09 65.1 88 42.0
Hund09766 Selenicereus undatus HOM05D003592 ORTHO05D004208 4.6e-09 65.1 95 37.9
HPP92_020881 Vanilla planifolia HOM05D003592 ORTHO05D004208 7.8e-09 64.3 87 44.8
HPP92_020885 Vanilla planifolia HOM05D003592 ORTHO05D004208 7.8e-09 64.3 87 44.8
BcaB08g36801 Brassica carinata HOM05D003592 ORTHO05D004208 1.0e-08 63.9 88 36.4
QL09p026459 Quercus lobata HOM05D003592 ORTHO05D004208 2.3e-08 62.8 91 37.4
SEGI_00089 Sequoiadendron giganteum HOM05D003592 ORTHO05D004208 2.3e-08 62.8 92 39.1
Solyc06g072845.1 Solanum lycopersicum HOM05D003592 ORTHO05D004208 2.3e-08 62.8 128 36.7
Sopen06g029230 Solanum pennellii HOM05D003592 ORTHO05D004208 2.3e-08 62.8 129 37.2
PGSC0003DMG400027031 Solanum tuberosum HOM05D003592 ORTHO05D004208 2.3e-08 62.8 129 37.2
Sp6g27060 Schrenkiella parvula HOM05D003592 ORTHO05D004208 5.0e-08 61.6 91 35.2
SEGI_16015 Sequoiadendron giganteum HOM05D003592 ORTHO05D004208 1.1e-07 60.5 89 38.2
Actinidia08732 Actinidia chinensis HOM05D003592 ORTHO05D004208 1.2e-06 57.0 46 54.3
Sed0022343 Sechium edule HOM05D003592 ORTHO05D004208 6.2e-06 54.7 122 36.1


User provided reference genes

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