Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE11G0492 Ceratophyllum demersum HOM05D006954 ORTHO05D008729 1.3e-277 959.5 645 100.0
CDE09G0910 Ceratophyllum demersum HOM05D006954 ORTHO05D008729 6.3e-200 701.4 611 80.0
TAR375G1092 Trochodendron aralioides HOM05D006954 ORTHO05D008729 4.4e-44 183.7 422 37.0
Dinv21639 Davidia involucrata HOM05D006954 ORTHO05D008729 1.3e-43 182.2 438 34.7
TAR375G0455 Trochodendron aralioides HOM05D006954 ORTHO05D008729 7.0e-42 176.4 444 35.4
Dinv43668 Davidia involucrata HOM05D006954 ORTHO05D008729 4.7e-38 163.7 354 37.3
MBI04_g09501_MAGBIO Magnolia biondii HOM05D006954 ORTHO05D008729 4.9e-35 153.7 355 34.4
Actinidia27466 Actinidia chinensis HOM05D001088 ORTHO05D002099 2.1e-33 148.3 351 35.6
Manes.01G080700 Manihot esculenta HOM05D006954 ORTHO05D008729 2.7e-33 147.9 410 34.9
PSO017G4363 Papaver somniferum HOM05D006954 ORTHO05D008729 9.5e-31 139.4 414 34.1
QL12p012133 Quercus lobata HOM05D006954 ORTHO05D008729 2.8e-30 137.9 223 39.9
Rhsim07G0108500 Rhododendron simsii HOM05D001088 ORTHO05D002099 4.0e-29 134.0 433 30.9
Hma1.2p1_0316F.1_g123150 Hydrangea macrophylla HOM05D006954 ORTHO05D008729 3.4e-28 131.0 393 31.6
Nn6g33957 Nelumbo nucifera HOM05D006954 ORTHO05D008729 5.8e-28 130.2 245 42.4
DCAR_006832 Daucus carota HOM05D001088 ORTHO05D002099 2.2e-27 128.3 393 30.8
TWI59G0609 Tripterygium wilfordii HOM05D006954 ORTHO05D008729 3.7e-27 127.5 371 32.3
Cfa011147 Carpinus fangiana HOM05D001088 ORTHO05D002099 3.2e-26 124.4 383 32.1
Prupe.2G137000 Prunus persica HOM05D006954 ORTHO05D008729 9.2e-26 122.9 402 31.3
Aqoxy7G00762 Aquilegia oxysepala HOM05D006954 ORTHO05D008729 1.2e-25 122.5 444 31.1
PSO170G0413 Papaver somniferum HOM05D006954 ORTHO05D008729 2.1e-25 121.7 446 29.4
MD07G1114400 Malus domestica HOM05D006954 ORTHO05D008729 3.5e-25 120.9 399 30.6
vmacro14083 Vaccinium macrocarpon HOM05D006954 ORTHO05D008729 4.6e-25 120.6 188 42.0
Thecc.01G384400 Theobroma cacao HOM05D006954 ORTHO05D008729 1.0e-24 119.4 296 33.8
CiPaw.14G025200 Carya illinoinensis HOM05D006954 ORTHO05D008729 1.3e-24 119.0 348 31.3
Haze_02712 Corylus avellana HOM05D006954 ORTHO05D008729 3.9e-24 117.5 313 33.2
Atru.chr5.233 Acer truncatum HOM05D006954 ORTHO05D008729 8.6e-24 116.3 234 34.6
Ciclev10023836m.g Citrus clementina HOM05D006638 ORTHO05D008246 1.5e-23 115.5 272 34.6
Duzib205G0178 Durio zibethinus HOM05D006954 ORTHO05D008729 5.6e-23 113.6 198 40.9
Hund17048 Selenicereus undatus HOM05D006954 ORTHO05D008729 9.5e-23 112.8 241 34.4
Hma1.2p1_0041F.1_g025380 Hydrangea macrophylla HOM05D006954 ORTHO05D008729 2.1e-22 111.7 228 34.2
Gohir.A07G147000 Gossypium hirsutum HOM05D006954 ORTHO05D008729 2.8e-22 111.3 205 38.0
MD02G1210900 Malus domestica HOM05D006954 ORTHO05D008729 4.7e-22 110.5 369 30.4
Ciclev10019520m.g Citrus clementina HOM05D006954 ORTHO05D008729 1.1e-21 109.4 206 34.0
Gohir.D07G153000 Gossypium hirsutum HOM05D006954 ORTHO05D008729 1.4e-21 109.0 292 32.9
AUR62013686 Chenopodium quinoa HOM05D006954 ORTHO05D008729 1.8e-21 108.6 251 33.1
Duzib136G0004 Durio zibethinus HOM05D006954 ORTHO05D008729 3.1e-21 107.8 194 39.7
QL04p036098 Quercus lobata HOM05D006954 ORTHO05D008729 3.1e-21 107.8 291 33.0
Oeu026406.1 Olea europaea HOM05D006954 ORTHO05D008729 4.0e-21 107.5 201 33.8
EL10Ac1g00835 Beta vulgaris HOM05D006954 ORTHO05D008729 5.2e-21 107.1 204 37.7
Gorai.001G175100 Gossypium raimondii HOM05D006954 ORTHO05D008729 5.2e-21 107.1 292 32.5
QL04p036448 Quercus lobata HOM05D006954 ORTHO05D008729 5.2e-21 107.1 214 36.9
QL04p036667 Quercus lobata HOM05D006954 ORTHO05D008729 5.2e-21 107.1 198 37.4
Ah.05g173790 Amaranthus hybridus HOM05D006954 ORTHO05D008729 6.8e-21 106.7 205 37.6
ECA233G0962 Erigeron canadensis HOM05D006954 ORTHO05D008729 1.5e-20 105.5 258 36.8
COL.COLO4_12483 Corchorus olitorius HOM05D006954 ORTHO05D008729 2.0e-20 105.1 220 36.8
FAN01G1544 Fragaria x ananassa HOM05D006954 ORTHO05D008729 2.0e-20 105.1 372 31.5
Lj8P262T33 Lonicera japonica HOM05D006954 ORTHO05D008729 2.0e-20 105.1 254 36.6
AUR62004161 Chenopodium quinoa HOM05D006954 ORTHO05D008729 2.6e-20 104.8 250 33.2
FAN03G1627 Fragaria x ananassa HOM05D006954 ORTHO05D008729 2.6e-20 104.8 377 31.6
FAN06G0609 Fragaria x ananassa HOM05D006954 ORTHO05D008729 3.4e-20 104.4 382 31.7
RcHm_v2.0_Chr1g0349021 Rosa chinensis HOM05D006954 ORTHO05D008729 3.4e-20 104.4 366 29.2
FAN04G0536 Fragaria x ananassa HOM05D006954 ORTHO05D008729 7.6e-20 103.2 283 32.2
Rhsim07G0031700 Rhododendron simsii HOM05D001088 ORTHO05D002099 7.6e-20 103.2 246 32.5
FvH4_5g18930 Fragaria vesca HOM05D006954 ORTHO05D008729 1.3e-19 102.4 283 32.2
FAN06G1022 Fragaria x ananassa HOM05D006954 ORTHO05D008729 1.3e-19 102.4 381 31.0
PGR042G3906 Punica granatum HOM05D006954 ORTHO05D008729 1.3e-19 102.4 290 31.7
HPP92_008568 Vanilla planifolia HOM05D006954 ORTHO05D008729 1.3e-19 102.4 304 32.9
GSVIVG01018156001 Vitis vinifera HOM05D006638 ORTHO05D008246 1.7e-19 102.1 246 33.7
Duzib133G0753 Durio zibethinus HOM05D006954 ORTHO05D008729 2.2e-19 101.7 218 34.4
Lj2A217G32 Lonicera japonica HOM05D006954 ORTHO05D008729 2.9e-19 101.3 195 36.9
Nitab4.5_0000859g0170 Nicotiana tabacum HOM05D006954 ORTHO05D008729 2.9e-19 101.3 301 29.9
FAN13G0002 Fragaria x ananassa HOM05D006954 ORTHO05D008729 6.4e-19 100.1 283 31.4
FAN10G2562 Fragaria x ananassa HOM05D006954 ORTHO05D008729 8.4e-19 99.8 377 31.3
FAN10G3525 Fragaria x ananassa HOM05D006954 ORTHO05D008729 2.4e-18 98.2 377 31.0
FAN18G2950 Fragaria x ananassa HOM05D006954 ORTHO05D008729 2.4e-18 98.2 283 31.4
Oeu009770.1 Olea europaea HOM05D006954 ORTHO05D008729 2.4e-18 98.2 308 29.5
SHI20280 Sapria himalayana HOM05D006954 ORTHO05D008729 2.4e-18 98.2 229 34.1
PGSC0003DMG400026019 Solanum tuberosum HOM05D006954 ORTHO05D008729 2.4e-18 98.2 318 27.4
Eucgr.E00424 Eucalyptus grandis HOM05D006954 ORTHO05D008729 4.2e-18 97.4 331 29.3
HanXRQChr16g0511611 Helianthus annuus HOM05D006954 ORTHO05D008729 7.1e-18 96.7 353 30.0
Oeu031219.1 Olea europaea HOM05D006954 ORTHO05D008729 9.2e-18 96.3 205 32.2
Lj6C70T9 Lonicera japonica HOM05D006954 ORTHO05D008729 1.2e-17 95.9 266 32.3
Sopen01g036590 Solanum pennellii HOM05D006954 ORTHO05D008729 1.2e-17 95.9 325 27.7
SalBow5G1520 Salvia bowleyana HOM05D006954 ORTHO05D008729 2.1e-17 95.1 201 34.3
Solyc01g090850.3 Solanum lycopersicum HOM05D006954 ORTHO05D008729 3.5e-17 94.4 289 28.0
Nitab4.5_0011151g0020 Nicotiana tabacum HOM05D006954 ORTHO05D008729 6.0e-17 93.6 301 29.9
Sc02g0002800 Simmondsia chinensis HOM05D006954 ORTHO05D008729 1.0e-16 92.8 213 33.3
Peaxi162Scf00803g00025 Petunia axillaris HOM05D006954 ORTHO05D008729 1.3e-16 92.4 227 30.8
RcHm_v2.0_Chr7g0203321 Rosa chinensis HOM05D006954 ORTHO05D008729 2.3e-16 91.7 292 28.1
TAR636G1544 Trochodendron aralioides HOM05D006954 ORTHO05D008729 3.9e-16 90.9 149 38.3
arahy.Tifrunner.gnm1.ann1.LN378K Arachis hypogaea HOM05D006954 ORTHO05D008729 5.1e-16 90.5 195 32.8
arahy.Tifrunner.gnm1.ann1.UR8A7Q Arachis hypogaea HOM05D006954 ORTHO05D008729 4.3e-15 87.4 191 33.5
Lj3g0019070 Lotus japonicus HOM05D006954 ORTHO05D008729 1.2e-14 85.9 228 32.9
Zm00001eb023500 Zea mays HOM05D006954 ORTHO05D008729 1.2e-14 85.9 396 25.8
Lalb_Chr01g0021361 Lupinus albus HOM05D006954 ORTHO05D008729 2.1e-14 85.1 403 25.6
CAN.G1872.2 Capsicum annuum HOM05D006954 ORTHO05D008729 4.7e-14 84.0 261 28.7
SGA_v2.0_scaffold11G05525 Striga asiatica HOM05D006954 ORTHO05D008729 1.1e-13 82.8 247 29.6
Ca_19859_v3 Cicer arietinum L. HOM05D006954 ORTHO05D008729 1.4e-13 82.4 181 33.1
Glyma.11G167382 Glycine max HOM05D006954 ORTHO05D008729 1.8e-13 82.0 211 30.8
Lalb_Chr07g0190311 Lupinus albus HOM05D006954 ORTHO05D008729 1.8e-13 82.0 216 30.6
ATR0317G083 Amborella trichopoda HOM05D006954 ORTHO05D008729 3.1e-13 81.3 351 28.2
ECA236G3196 Erigeron canadensis HOM05D006954 ORTHO05D008729 5.3e-13 80.5 215 28.4
Phvul.008G143700 Phaseolus vulgaris HOM05D006954 ORTHO05D008729 5.3e-13 80.5 219 32.9
Zm00001eb391500 Zea mays HOM05D006954 ORTHO05D008729 5.3e-13 80.5 248 27.8
VMungo1383G2724 Vigna mungo HOM05D006954 ORTHO05D008729 1.2e-12 79.3 217 30.0
Phvul.010G071500 Phaseolus vulgaris HOM05D006954 ORTHO05D008729 3.4e-12 77.8 207 30.9
TAR629G0541 Trochodendron aralioides HOM05D005220 ORTHO05D006082 7.6e-12 76.6 183 31.1
Sabra17G0080700 Salix brachista HOM05D005220 ORTHO05D006082 9.9e-12 76.3 199 28.6
COL.COLO4_37173 Corchorus olitorius HOM05D006954 ORTHO05D008729 1.3e-11 75.9 362 27.9
Glyma.01G134400 Glycine max HOM05D006954 ORTHO05D008729 2.9e-11 74.7 249 29.7
Cc07_g04000 Coffea canephora HOM05D005220 ORTHO05D006082 4.9e-11 73.9 184 29.9
Nn3g17397 Nelumbo nucifera HOM05D005220 ORTHO05D006082 4.9e-11 73.9 184 27.7
Glyma.03G033300 Glycine max HOM05D006954 ORTHO05D008729 6.4e-11 73.6 253 30.0
VMungo1383G2795 Vigna mungo HOM05D005220 ORTHO05D006082 6.4e-11 73.6 190 28.9
Potri.017G091700 Populus trichocarpa HOM05D005220 ORTHO05D006082 1.4e-10 72.4 198 27.8
Lsat_1_v5_gn_7_8881 Lactuca sativa HOM05D006954 ORTHO05D008729 3.2e-10 71.2 194 26.3
PSO478G1432 Papaver somniferum HOM05D005220 ORTHO05D006082 5.4e-10 70.5 188 27.7
HanXRQChr06g0168891 Helianthus annuus HOM05D006954 ORTHO05D008729 7.1e-10 70.1 183 29.5
HanXRQChr06g0169051 Helianthus annuus HOM05D006954 ORTHO05D008729 7.1e-10 70.1 183 29.5
CSS0002601 Camellia sinensis var. sinensis HOM05D005220 ORTHO05D006082 9.3e-10 69.7 184 28.8
Hma1.2p1_0481F.1_g161950 Hydrangea macrophylla HOM05D005220 ORTHO05D006082 9.3e-10 69.7 183 29.0
CDE10G0382 Ceratophyllum demersum HOM05D005220 ORTHO05D006082 1.6e-09 68.9 220 27.7
Glyma.08G242800 Glycine max HOM05D005220 ORTHO05D006082 2.1e-09 68.6 190 26.8
TAR622G0939 Trochodendron aralioides HOM05D005220 ORTHO05D006082 2.7e-09 68.2 196 26.0
Actinidia01983 Actinidia chinensis HOM05D005220 ORTHO05D006082 3.5e-09 67.8 183 26.2
Phvul.008G035000 Phaseolus vulgaris HOM05D005220 ORTHO05D006082 7.8e-09 66.6 191 28.3
ATR0064G106 Amborella trichopoda HOM05D005220 ORTHO05D006082 1.0e-08 66.2 178 28.1
Haze_07684 Corylus avellana HOM05D005220 ORTHO05D006082 1.3e-08 65.9 178 29.8
Rhsim10G0044300 Rhododendron simsii HOM05D005220 ORTHO05D006082 1.7e-08 65.5 191 26.2
Lalb_Chr17g0337031 Lupinus albus HOM05D005220 ORTHO05D006082 2.3e-08 65.1 189 25.4
Nitab4.5_0001076g0060 Nicotiana tabacum HOM05D020458 ORTHO05D022160 2.3e-08 65.1 359 26.5
PSO302G0007 Papaver somniferum HOM05D005220 ORTHO05D006082 2.3e-08 65.1 191 24.6
Cfa019301 Carpinus fangiana HOM05D005220 ORTHO05D006082 3.0e-08 64.7 178 29.8
Psat0s3685g0160 Pisum sativum HOM05D006954 ORTHO05D008729 3.0e-08 64.7 246 25.6
MSTRG.3015 Avicennia marina HOM05D005220 ORTHO05D006082 3.9e-08 64.3 186 26.9
PSO017G3052 Papaver somniferum HOM05D005220 ORTHO05D006082 3.9e-08 64.3 191 25.1
arahy.Tifrunner.gnm1.ann1.ADMQ1S Arachis hypogaea HOM05D006954 ORTHO05D008729 5.1e-08 63.9 209 23.9
Lj9P565T15 Lonicera japonica HOM05D006954 ORTHO05D008729 5.1e-08 63.9 74 40.5
Manes.01G098100 Manihot esculenta HOM05D005220 ORTHO05D006082 5.1e-08 63.9 178 27.0
Prupe.5G069800 Prunus persica HOM05D006954 ORTHO05D008729 5.1e-08 63.9 352 26.7
DCAR_011050 Daucus carota HOM05D005220 ORTHO05D006082 6.6e-08 63.5 241 27.8
Aqoxy3G03583 Aquilegia oxysepala HOM05D005220 ORTHO05D006082 8.7e-08 63.2 181 30.9
CiPaw.11G050100 Carya illinoinensis HOM05D005220 ORTHO05D006082 8.7e-08 63.2 186 25.8
Glyma.18G265000 Glycine max HOM05D005220 ORTHO05D006082 8.7e-08 63.2 182 28.0
Oeu062150.1 Olea europaea HOM05D005220 ORTHO05D006082 8.7e-08 63.2 191 27.7
TWI34G1812 Tripterygium wilfordii HOM05D005220 ORTHO05D006082 8.7e-08 63.2 185 25.4
CiPaw.04G057500 Carya illinoinensis HOM05D005220 ORTHO05D006082 1.1e-07 62.8 190 25.3
Hund02604 Selenicereus undatus HOM05D005220 ORTHO05D006082 1.1e-07 62.8 215 26.0
Ah.11g047990 Amaranthus hybridus HOM05D005220 ORTHO05D006082 1.5e-07 62.4 191 27.2
Oeu010241.1 Olea europaea HOM05D005220 ORTHO05D006082 1.5e-07 62.4 190 24.7
Sc04g0003090 Simmondsia chinensis HOM05D005220 ORTHO05D006082 1.5e-07 62.4 183 25.1
TAR636G1204 Trochodendron aralioides HOM05D005220 ORTHO05D006082 1.5e-07 62.4 171 26.9
MELO3C017209.2 Cucumis melo HOM05D005220 ORTHO05D006082 1.9e-07 62.0 213 24.4
Dinv33817 Davidia involucrata HOM05D005220 ORTHO05D006082 1.9e-07 62.0 178 27.5
Actinidia07816 Actinidia chinensis HOM05D005220 ORTHO05D006082 2.5e-07 61.6 183 23.5
MBI16_g09907_MAGBIO Magnolia biondii HOM05D005220 ORTHO05D006082 2.5e-07 61.6 201 25.4
Dinv34960 Davidia involucrata HOM05D005220 ORTHO05D006082 3.3e-07 61.2 183 26.8
Thecc.03G251300 Theobroma cacao HOM05D006954 ORTHO05D008729 3.3e-07 61.2 66 50.0
Nitab4.5_0000618g0050 Nicotiana tabacum HOM05D020458 ORTHO05D022160 4.3e-07 60.8 201 29.4
TPR.G12226 Trifolium pratense HOM05D005220 ORTHO05D006082 4.3e-07 60.8 211 23.7
TPR.G4994 Trifolium pratense HOM05D006954 ORTHO05D008246 4.3e-07 60.8 177 24.9
Lj6C70T8 Lonicera japonica HOM05D006954 ORTHO05D008729 5.6e-07 60.5 75 53.3
Hund02603 Selenicereus undatus HOM05D005220 ORTHO05D006082 5.6e-07 60.5 183 27.3
vmacro05657 Vaccinium macrocarpon HOM05D005220 ORTHO05D006082 5.6e-07 60.5 179 27.4
GSVIVG01011505001 Vitis vinifera HOM05D005220 ORTHO05D006082 7.3e-07 60.1 178 28.1
Ciclev10020317m.g Citrus clementina HOM05D005220 ORTHO05D006082 9.6e-07 59.7 179 26.3
Gorai.008G196900 Gossypium raimondii HOM05D005220 ORTHO05D006082 1.3e-06 59.3 193 25.4
ATR0681G067 Amborella trichopoda HOM05D005220 ORTHO05D006082 1.6e-06 58.9 230 22.6
Lju41C5T5 Lonicera japonica HOM05D005220 ORTHO05D006082 2.1e-06 58.5 182 26.4
Lj1g0008070 Lotus japonicus HOM05D005220 ORTHO05D006082 2.1e-06 58.5 178 28.7
arahy.Tifrunner.gnm1.ann1.7WP6A4 Arachis hypogaea HOM05D006954 ORTHO05D008729 2.8e-06 58.2 205 22.9
Gohir.D12G183566 Gossypium hirsutum HOM05D005220 ORTHO05D006082 2.8e-06 58.2 189 25.4
TWI60G0661 Tripterygium wilfordii HOM05D005220 ORTHO05D006082 2.8e-06 58.2 186 25.3
arahy.Tifrunner.gnm1.ann1.8S7SHD Arachis hypogaea HOM05D005220 ORTHO05D006082 3.6e-06 57.8 182 27.5
Sed0003803 Sechium edule HOM05D005220 ORTHO05D006082 3.6e-06 57.8 183 24.6
FAN28G0527 Fragaria x ananassa HOM05D003426 ORTHO05D003816 6.2e-06 57.0 202 27.7
Peaxi162Scf00629g00420 Petunia axillaris HOM05D005220 ORTHO05D006082 6.2e-06 57.0 188 27.7
TAR374G0076 Trochodendron aralioides HOM05D005220 ORTHO05D006082 6.2e-06 57.0 173 26.0


User provided reference genes

Program Settings