Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE11G0477 Ceratophyllum demersum HOM05D007003 ORTHO05D008499 4.9e-134 481.1 236 100.0
PSO675G0160 Papaver somniferum HOM05D007003 ORTHO05D008499 1.8e-59 233.4 238 51.7
PGSC0003DMG400042605 Solanum tuberosum HOM05D007003 ORTHO05D008499 9.1e-56 221.1 249 47.8
Solyc07g064480.1 Solanum lycopersicum HOM05D007003 ORTHO05D008499 1.6e-55 220.3 259 46.3
vmacro11731 Vaccinium macrocarpon HOM05D007003 ORTHO05D008499 2.6e-55 219.5 249 46.2
Sopen07g032680 Solanum pennellii HOM05D007003 ORTHO05D008499 5.9e-55 218.4 249 46.6
Cc05_g13800 Coffea canephora HOM05D007003 ORTHO05D008499 3.2e-53 212.6 236 46.2
Rhsim06G0216400 Rhododendron simsii HOM05D000561 ORTHO05D000514 3.2e-53 212.6 260 44.2
Migut.M01775 Erythranthe guttata HOM05D007003 ORTHO05D008499 7.2e-53 211.5 241 45.6
Nitab4.5_0001913g0010 Nicotiana tabacum HOM05D007003 ORTHO05D008499 9.4e-53 211.1 235 45.5
TAR627G0793 Trochodendron aralioides HOM05D007003 ORTHO05D008499 6.1e-52 208.4 350 34.9
Actinidia36944 Actinidia chinensis HOM05D001273 ORTHO05D000023 8.0e-52 208.0 243 46.5
Manes.03G124400 Manihot esculenta HOM05D007003 ORTHO05D008499 1.8e-51 206.8 268 41.8
Oeu007586.1 Olea europaea HOM05D007003 ORTHO05D008499 4.0e-51 205.7 237 44.3
Nitab4.5_0003812g0060 Nicotiana tabacum HOM05D007003 ORTHO05D008499 5.2e-51 205.3 235 44.7
Dinv40746 Davidia involucrata HOM05D007003 ORTHO05D008499 3.4e-50 202.6 301 38.5
Gohir.D05G367600 Gossypium hirsutum HOM05D007003 ORTHO05D008499 3.4e-50 202.6 293 39.9
Nn1g03566 Nelumbo nucifera HOM05D007003 ORTHO05D008499 3.4e-50 202.6 388 32.0
Gohir.A04G018400 Gossypium hirsutum HOM05D007003 ORTHO05D008499 7.5e-50 201.4 293 39.6
Lj1P870T43 Lonicera japonica HOM05D007003 ORTHO05D008499 7.5e-50 201.4 229 46.7
Gorai.009G435200 Gossypium raimondii HOM05D007003 ORTHO05D008499 1.7e-49 200.3 293 39.6
CSS0047719 Camellia sinensis var. sinensis HOM05D007003 ORTHO05D008499 2.4e-48 196.4 305 37.4
Potri.001G423900 Populus trichocarpa HOM05D007003 ORTHO05D008499 7.0e-48 194.9 267 40.1
HPP92_012320 Vanilla planifolia HOM05D007003 ORTHO05D008499 7.0e-48 194.9 309 37.5
HPP92_012396 Vanilla planifolia HOM05D007003 ORTHO05D008499 7.0e-48 194.9 309 37.5
CiPaw.12G128900 Carya illinoinensis HOM05D007003 ORTHO05D008499 1.0e-46 191.0 316 35.8
Sabra16G0288900 Salix brachista HOM05D007003 ORTHO05D008499 1.0e-46 191.0 267 39.7
DCAR_022556 Daucus carota HOM05D007003 ORTHO05D008499 5.0e-46 188.7 234 45.3
Peaxi162Scf00964g00113 Petunia axillaris HOM05D007003 ORTHO05D008499 8.5e-46 188.0 264 40.5
Eucgr.F00879 Eucalyptus grandis HOM05D007003 ORTHO05D008499 1.9e-45 186.8 246 41.5
Lalb_Chr04g0248491 Lupinus albus HOM05D007003 ORTHO05D008499 1.9e-45 186.8 312 35.3
MELO3C018208.2 Cucumis melo HOM05D007003 ORTHO05D008499 3.2e-45 186.0 266 39.8
ATR0752G213 Amborella trichopoda HOM05D007003 ORTHO05D008499 7.2e-45 184.9 374 32.4
CsaV3_3G044430 Cucumis sativus L. HOM05D007003 ORTHO05D008499 1.2e-44 184.1 266 39.8
Medtr5g092280 Medicago truncatula HOM05D007003 ORTHO05D008499 2.7e-44 183.0 300 38.0
Aqoxy7G03837 Aquilegia oxysepala HOM05D007003 ORTHO05D008499 4.0e-43 179.1 332 34.3
TPR.G22251 Trifolium pratense HOM05D007003 ORTHO05D008499 5.2e-43 178.7 272 39.0
Glyma.14G024800 Glycine max HOM05D007003 ORTHO05D008499 8.8e-43 177.9 326 34.0
Ciclev10008359m.g Citrus clementina HOM05D007003 ORTHO05D008499 1.2e-42 177.6 336 34.2
Eucgr.L01323 Eucalyptus grandis HOM05D007003 ORTHO05D008499 1.2e-42 177.6 279 36.9
Sed0008518 Sechium edule HOM05D007003 ORTHO05D008499 1.2e-42 177.6 255 39.6
Lsat_1_v5_gn_5_6061 Lactuca sativa HOM05D007003 ORTHO05D008499 1.5e-42 177.2 240 41.7
VMungo0647G1301 Vigna mungo HOM05D007003 ORTHO05D008499 1.5e-42 177.2 328 33.8
MD11G1220900 Malus domestica HOM05D001273 ORTHO05D008499 9.8e-42 174.5 371 31.3
Ah.04g165820 Amaranthus hybridus HOM05D007003 ORTHO05D008499 1.3e-41 174.1 317 32.2
Phvul.008G266200 Phaseolus vulgaris HOM05D007003 ORTHO05D008499 1.7e-41 173.7 324 34.6
Eucgr.F00790 Eucalyptus grandis HOM05D007003 ORTHO05D008499 2.8e-41 172.9 267 37.8
ECA246G4814 Erigeron canadensis HOM05D001273 ORTHO05D000023 4.9e-41 172.2 261 36.4
Eucgr.F00779 Eucalyptus grandis HOM05D007003 ORTHO05D008499 8.3e-41 171.4 299 34.1
Atru.chr2.3373 Acer truncatum HOM05D007003 ORTHO05D008499 1.4e-40 170.6 330 33.3
RcHm_v2.0_Chr5g0039141 Rosa chinensis HOM05D007003 ORTHO05D008499 1.8e-40 170.2 377 30.8
TWI39G0907 Tripterygium wilfordii HOM05D007003 ORTHO05D008499 3.1e-40 169.5 232 43.5
Thecc.07G042400 Theobroma cacao HOM05D007003 ORTHO05D008499 4.1e-40 169.1 375 30.9
EL10Ac4g07838 Beta vulgaris HOM05D007003 ORTHO05D008499 5.4e-40 168.7 325 31.1
FvH4_3g22471 Fragaria vesca HOM05D007003 ORTHO05D008499 5.4e-40 168.7 371 31.0
AUR62015746 Chenopodium quinoa HOM05D007003 ORTHO05D008499 9.1e-40 167.9 332 30.1
AUR62020466 Chenopodium quinoa HOM05D007003 ORTHO05D008499 1.6e-39 167.2 332 31.3
PGR119G0071 Punica granatum HOM05D007003 ORTHO05D008499 1.6e-39 167.2 316 34.5
Sc16g0006140 Simmondsia chinensis HOM05D007003 ORTHO05D008499 2.0e-39 166.8 346 31.2
Prupe.4G211300 Prunus persica HOM05D007003 ORTHO05D008499 5.9e-39 165.2 376 30.1
QL03p009927 Quercus lobata HOM05D007003 ORTHO05D008499 5.9e-39 165.2 406 28.8
GSVIVG01037627001 Vitis vinifera HOM05D007003 ORTHO05D008499 5.9e-39 165.2 307 34.2
Cfa020358 Carpinus fangiana HOM05D007003 ORTHO05D008499 1.0e-38 164.5 383 30.3
FAN21G0080 Fragaria x ananassa HOM05D007003 ORTHO05D008499 1.0e-38 164.5 371 29.9
Haze_09661 Corylus avellana HOM05D007003 ORTHO05D008499 1.3e-38 164.1 391 29.4
A02p10000 Brassica napus HOM05D001404 ORTHO05D008499 2.9e-38 162.9 252 39.3
BraA02t06064Z Brassica rapa HOM05D001404 ORTHO05D002309 2.9e-38 162.9 252 39.3
QL08p011145 Quercus lobata HOM05D007003 ORTHO05D008499 2.9e-38 162.9 406 28.8
unitig_578.g16000 Utricularia gibba HOM05D007003 ORTHO05D008499 2.9e-38 162.9 251 37.1
C02p16580 Brassica napus HOM05D001404 ORTHO05D002309 3.8e-38 162.5 252 38.9
Eucgr.F00955 Eucalyptus grandis HOM05D007003 ORTHO05D008499 5.0e-38 162.2 278 35.6
BolC2t07756H Brassica oleracea HOM05D001404 ORTHO05D002309 6.6e-38 161.8 252 39.3
LjContig00272g0003747 Lotus japonicus HOM05D007003 ORTHO05D008499 1.5e-37 160.6 324 33.0
arahy.Tifrunner.gnm1.ann1.422Z41 Arachis hypogaea HOM05D007003 ORTHO05D008499 1.9e-37 160.2 357 32.2
CANSAT21G1622 Cannabis sativa HOM05D007003 ORTHO05D008499 1.9e-37 160.2 383 30.5
Eucgr.F00897 Eucalyptus grandis HOM05D007003 ORTHO05D008499 1.9e-37 160.2 289 33.9
arahy.Tifrunner.gnm1.ann1.6A6QM9 Arachis hypogaea HOM05D007003 ORTHO05D008499 1.2e-36 157.5 366 31.1
SGA_v2.0_scaffold424G51477 Striga asiatica HOM05D007003 ORTHO05D008499 1.6e-36 157.1 281 35.6
BcaB05g22167 Brassica carinata HOM05D007003 ORTHO05D008499 4.7e-36 155.6 264 36.7
Cpa.g.sc97.17 Carica papaya HOM05D007003 ORTHO05D008499 8.0e-36 154.8 386 29.0
Cfa020360 Carpinus fangiana HOM05D007003 ORTHO05D008499 8.0e-36 154.8 369 30.9
Sp6g16850 Schrenkiella parvula HOM05D007003 ORTHO05D008499 1.0e-35 154.5 310 32.6
CARHR268220 Cardamine hirsuta HOM05D007003 ORTHO05D008499 1.4e-35 154.1 306 31.7
Thhalv10013739m.g Eutrema salsugineum HOM05D007003 ORTHO05D008499 6.8e-35 151.8 309 31.7
Eucgr.F00928 Eucalyptus grandis HOM05D007003 ORTHO05D008499 1.2e-34 151.0 299 32.4
Psat2g013360 Pisum sativum HOM05D007003 ORTHO05D008499 1.5e-34 150.6 260 37.3
THA.LOC104817663 Tarenaya hassleriana HOM05D007003 ORTHO05D008499 1.5e-34 150.6 324 30.6
Aa31LG3G10810 Aethionema arabicum HOM05D007003 ORTHO05D008499 4.1e-32 142.5 300 30.7
SEGI_36701 Sequoiadendron giganteum HOM05D007003 ORTHO05D008499 1.2e-31 141.0 218 39.0
Duzib213G0769 Durio zibethinus HOM05D007003 ORTHO05D008499 2.7e-31 139.8 431 26.0
Eucgr.F00922 Eucalyptus grandis HOM05D007003 ORTHO05D008499 4.6e-31 139.0 244 34.4
AT5G54880 Arabidopsis thaliana HOM05D007003 ORTHO05D008499 1.0e-30 137.9 307 30.0
AL8G30340 Arabidopsis lyrata HOM05D007003 ORTHO05D008499 1.7e-30 137.1 310 28.4
MBI02_g22102_MAGBIO Magnolia biondii HOM05D007003 ORTHO05D008499 8.6e-30 134.8 135 47.4
Eucgr.F00913 Eucalyptus grandis HOM05D007003 ORTHO05D008499 5.6e-29 132.1 289 32.5
TPR.G22255 Trifolium pratense HOM05D005190 ORTHO05D006183 9.5e-29 131.3 248 34.3
MBI02_g19288_MAGBIO Magnolia biondii HOM05D007003 ORTHO05D008499 1.0e-27 127.9 135 46.7
Ca_26481_v3 Cicer arietinum L. HOM05D007003 ORTHO05D008499 2.6e-26 123.2 138 43.5
Actinidia05100 Actinidia chinensis HOM05D007003 ORTHO05D008499 5.8e-26 122.1 147 46.9
Os03g0568600 Oryza sativa ssp. japonica HOM05D007003 ORTHO05D008499 8.3e-25 118.2 430 24.2
SalBow8G3099 Salvia bowleyana HOM05D007003 ORTHO05D008499 4.1e-24 115.9 137 44.5
AagrBONN_evm.TU.Sc2ySwM_362.2079 Anthoceros agrestis HOM05D007003 ORTHO05D008499 5.4e-24 115.5 254 31.5
Pp3c4_4830 Physcomitrium patens HOM05D007003 ORTHO05D008499 6.6e-22 108.6 219 34.2
Zm00001eb219850 Zea mays HOM05D007003 ORTHO05D008499 6.6e-22 108.6 100 51.0
Zm00001eb026290 Zea mays HOM05D007003 ORTHO05D008499 8.6e-22 108.2 100 50.0
MBI02_g22101_MAGBIO Magnolia biondii HOM05D007003 ORTHO05D002463 1.5e-21 107.5 114 50.0
MD03G1204100 Malus domestica HOM05D007003 ORTHO05D008499 5.6e-21 105.5 89 56.2
TPR.G17434 Trifolium pratense HOM05D007003 ORTHO05D008499 2.8e-20 103.2 139 41.0
Carub.0008s1518 Capsella rubella HOM05D007003 ORTHO05D008499 5.8e-18 95.5 134 36.6
TPR.G1180 Trifolium pratense HOM05D007003 ORTHO05D008499 5.8e-18 95.5 78 57.7
CAN.G337.121 Capsicum annuum HOM05D007003 ORTHO05D008499 9.8e-18 94.7 72 61.1
Mapoly0032s0131 Marchantia polymorpha HOM05D007003 ORTHO05D008499 9.8e-18 94.7 248 29.0
TPR.G1231 Trifolium pratense HOM05D007003 ORTHO05D008499 4.9e-17 92.4 74 58.1
SMO339G0013 Selaginella moellendorffii HOM05D007003 ORTHO05D008499 4.6e-15 85.9 231 27.7
BcaC03g14277 Brassica carinata HOM05D007003 ORTHO05D008499 7.8e-15 85.1 79 51.9
Zm00001eb352490 Zea mays HOM05D006576 ORTHO05D008499 1.7e-14 84.0 71 49.3
Ca_03331_v3 Cicer arietinum L. HOM05D007003 ORTHO05D008499 1.2e-12 77.8 104 43.3
ClCG05G014280 Citrullus lanatus HOM05D007003 ORTHO05D008499 2.6e-10 70.1 219 24.2


User provided reference genes

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