Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE11G0466 Ceratophyllum demersum HOM05D006195 ORTHO05D007710 1.5e-219 765.8 365 100.0
MBI14_g15641_MAGBIO Magnolia biondii HOM05D006195 ORTHO05D007710 4.4e-150 535.0 336 73.5
Aqoxy1G02740 Aquilegia oxysepala HOM05D006195 ORTHO05D007710 1.7e-146 523.1 336 73.2
TAR629G3096 Trochodendron aralioides HOM05D006195 ORTHO05D007710 1.6e-144 516.5 320 75.0
CsaV3_1G011800 Cucumis sativus L. HOM05D006195 ORTHO05D007710 8.9e-143 510.8 336 70.8
Actinidia24060 Actinidia chinensis HOM05D006195 ORTHO05D007710 2.6e-142 509.2 337 69.4
ATR0693G097 Amborella trichopoda HOM05D006195 ORTHO05D007710 4.4e-142 508.4 362 66.3
Rhsim02G0120000 Rhododendron simsii HOM05D006195 ORTHO05D007710 5.8e-142 508.1 336 69.6
Cfa000355 Carpinus fangiana HOM05D006195 ORTHO05D007710 8.3e-141 504.2 368 65.5
ClCG03G005530 Citrullus lanatus HOM05D006195 ORTHO05D007710 8.3e-141 504.2 339 69.6
PSO675G1294 Papaver somniferum HOM05D006195 ORTHO05D007710 1.9e-140 503.1 336 69.3
Eucgr.E03701 Eucalyptus grandis HOM05D006195 ORTHO05D007710 4.1e-140 501.9 365 64.9
Lj2A280G38 Lonicera japonica HOM05D006195 ORTHO05D007710 7.1e-140 501.1 337 70.0
HanXRQChr14g0437281 Helianthus annuus HOM05D006195 ORTHO05D007710 1.6e-139 500.0 367 66.2
Sc17g0006620 Simmondsia chinensis HOM05D006195 ORTHO05D007710 2.1e-139 499.6 355 65.9
QL04p018330 Quercus lobata HOM05D006195 ORTHO05D007710 3.5e-139 498.8 336 68.8
Sed0022279 Sechium edule HOM05D006195 ORTHO05D007710 3.5e-139 498.8 336 69.0
Os03g0738000 Oryza sativa ssp. japonica HOM05D006195 ORTHO05D007710 6.0e-139 498.0 335 67.8
TWI38G0511 Tripterygium wilfordii HOM05D006195 ORTHO05D007710 7.8e-139 497.7 365 65.8
CiPaw.09G158100 Carya illinoinensis HOM05D006195 ORTHO05D007710 3.0e-138 495.7 336 68.5
Thecc.06G199000 Theobroma cacao HOM05D006195 ORTHO05D007710 3.0e-138 495.7 341 68.0
Lsat_1_v5_gn_7_19641 Lactuca sativa HOM05D006195 ORTHO05D007710 1.1e-137 493.8 349 67.0
PGR042G1193 Punica granatum HOM05D006195 ORTHO05D007710 1.5e-137 493.4 336 66.4
GSVIVG01003194001 Vitis vinifera HOM05D006195 ORTHO05D007710 3.3e-137 492.3 339 67.0
Lalb_Chr09g0327371 Lupinus albus HOM05D006195 ORTHO05D007710 7.3e-137 491.1 359 66.6
EL10Ac8g20527 Beta vulgaris HOM05D006195 ORTHO05D007710 9.5e-137 490.7 339 68.1
Gorai.009G173800 Gossypium raimondii HOM05D006195 ORTHO05D007710 1.6e-136 490.0 338 67.8
Medtr4g091080 Medicago truncatula HOM05D006195 ORTHO05D007710 1.6e-136 490.0 357 64.7
Gohir.A05G165600 Gossypium hirsutum HOM05D006195 ORTHO05D007710 4.7e-136 488.4 338 67.5
SGA_v2.0_scaffold7G03951 Striga asiatica HOM05D006195 ORTHO05D007710 4.7e-136 488.4 338 68.6
AT4G21520 Arabidopsis thaliana HOM05D006195 ORTHO05D007710 6.2e-136 488.0 365 64.7
Carub.0007s1990 Capsella rubella HOM05D006195 ORTHO05D007710 8.1e-136 487.6 360 65.3
COL.COLO4_31584 Corchorus olitorius HOM05D006195 ORTHO05D007710 8.1e-136 487.6 337 68.2
ECA236G2696 Erigeron canadensis HOM05D006195 ORTHO05D007710 1.1e-135 487.3 351 66.7
Gohir.D05G168600 Gossypium hirsutum HOM05D006195 ORTHO05D007710 1.1e-135 487.3 338 67.5
vmacro15867 Vaccinium macrocarpon HOM05D006195 ORTHO05D007710 1.1e-135 487.3 336 67.6
BcaNung02791 Brassica carinata HOM05D006195 ORTHO05D007710 1.4e-135 486.9 368 63.9
PGSC0003DMG400022408 Solanum tuberosum HOM05D006195 ORTHO05D007710 1.8e-135 486.5 367 63.8
MD10G1303200 Malus domestica HOM05D006195 ORTHO05D007710 2.3e-135 486.1 336 67.6
Oeu038214.1 Olea europaea HOM05D006195 ORTHO05D007710 2.3e-135 486.1 339 68.4
Potri.011G043000 Populus trichocarpa HOM05D006195 ORTHO05D007710 4.0e-135 485.3 336 66.7
Ciclev10015313m.g Citrus clementina HOM05D006195 ORTHO05D007710 6.8e-135 484.6 336 67.0
Cpa.g.sc27.120 Carica papaya HOM05D006195 ORTHO05D007710 8.9e-135 484.2 336 66.1
AL7G32530 Arabidopsis lyrata HOM05D006195 ORTHO05D007710 1.5e-134 483.4 364 64.3
Atru.chr10.2006 Acer truncatum HOM05D006195 ORTHO05D007710 2.0e-134 483.0 358 63.4
MD05G1325300 Malus domestica HOM05D006195 ORTHO05D007710 2.0e-134 483.0 366 64.2
Solyc02g079110.3 Solanum lycopersicum HOM05D006195 ORTHO05D007710 2.6e-134 482.6 365 63.3
Sopen02g023920 Solanum pennellii HOM05D006195 ORTHO05D007710 2.6e-134 482.6 365 63.3
Sabra11G0029600 Salix brachista HOM05D006195 ORTHO05D001726 4.4e-134 481.9 337 65.6
A01p12830 Brassica napus HOM05D006195 ORTHO05D007710 5.8e-134 481.5 362 63.3
Thhalv10025271m.g Eutrema salsugineum HOM05D006195 ORTHO05D007710 7.6e-134 481.1 340 67.4
RcHm_v2.0_Chr5g0006371 Rosa chinensis HOM05D006195 ORTHO05D007710 9.9e-134 480.7 337 67.1
Sp7g19630 Schrenkiella parvula HOM05D006195 ORTHO05D007710 9.9e-134 480.7 339 67.0
BraA01t01227Z Brassica rapa HOM05D006195 ORTHO05D007710 1.3e-133 480.3 363 62.5
C01p15450 Brassica napus HOM05D006195 ORTHO05D007710 1.7e-133 479.9 369 62.9
BolC1t01499H Brassica oleracea HOM05D006195 ORTHO05D007710 1.7e-133 479.9 369 62.9
CARHR228180 Cardamine hirsuta HOM05D006195 ORTHO05D007710 1.7e-133 479.9 340 66.5
Cc02_g12450 Coffea canephora HOM05D006195 ORTHO05D007710 1.7e-133 479.9 364 65.1
Aa31LG6G3540 Aethionema arabicum HOM05D006195 ORTHO05D007710 2.2e-133 479.6 340 66.2
SalBow8G2471 Salvia bowleyana HOM05D006195 ORTHO05D007710 2.2e-133 479.6 336 67.9
Migut.M01211 Erythranthe guttata HOM05D006195 ORTHO05D007710 2.9e-133 479.2 349 66.2
MSTRG.8639 Avicennia marina HOM05D006195 ORTHO05D007710 3.7e-133 478.8 352 63.9
CANSAT56G3748 Cannabis sativa HOM05D006195 ORTHO05D007710 6.4e-133 478.0 338 67.2
Ca_18483_v3 Cicer arietinum L. HOM05D006195 ORTHO05D007710 6.4e-133 478.0 374 62.8
Prupe.4G036600 Prunus persica HOM05D006195 ORTHO05D007710 8.3e-133 477.6 336 66.7
CSS0049192 Camellia sinensis var. sinensis HOM05D006195 ORTHO05D007710 1.4e-132 476.9 338 65.7
Migut.I00196 Erythranthe guttata HOM05D006195 ORTHO05D007710 1.4e-132 476.9 349 65.9
TPR.G32422 Trifolium pratense HOM05D006195 ORTHO05D007710 2.4e-132 476.1 358 64.5
FAN11G1039 Fragaria x ananassa HOM05D006195 ORTHO05D007710 4.1e-132 475.3 368 63.6
VMungo0251G2515 Vigna mungo HOM05D006195 ORTHO05D007710 4.1e-132 475.3 362 62.2
Peaxi162Scf00355g00914 Petunia axillaris HOM05D006195 ORTHO05D007710 1.2e-131 473.8 375 62.1
FvH4_3g04030 Fragaria vesca HOM05D006195 ORTHO05D007710 2.7e-131 472.6 354 63.8
Haze_06571 Corylus avellana HOM05D006195 ORTHO05D007710 7.8e-131 471.1 327 68.2
THA.LOC104806275 Tarenaya hassleriana HOM05D006195 ORTHO05D007710 1.3e-130 470.3 352 63.9
Phvul.002G222200 Phaseolus vulgaris HOM05D006195 ORTHO05D007710 2.3e-130 469.5 358 62.8
arahy.Tifrunner.gnm1.ann1.HDHM3Z Arachis hypogaea HOM05D006195 ORTHO05D007710 3.9e-130 468.8 336 64.9
Glyma.07G190200 Glycine max HOM05D006195 ORTHO05D007710 1.5e-129 466.8 366 62.3
arahy.Tifrunner.gnm1.ann1.IWY5CJ Arachis hypogaea HOM05D006195 ORTHO05D007710 1.9e-129 466.5 336 64.6
Zm00001eb056530 Zea mays HOM05D006195 ORTHO05D007710 6.2e-128 461.5 335 65.4
Pp3c6_22670 Physcomitrium patens HOM05D006195 ORTHO05D007710 1.1e-127 460.7 359 62.7
Manes.17G039200 Manihot esculenta HOM05D006195 ORTHO05D007710 2.4e-127 459.5 324 67.3
Nitab4.5_0009994g0040 Nicotiana tabacum HOM05D006195 ORTHO05D007710 2.4e-127 459.5 392 58.9
AUR62014719 Chenopodium quinoa HOM05D006195 ORTHO05D007710 2.6e-126 456.1 347 65.1
Duzib235G1322 Durio zibethinus HOM05D006195 ORTHO05D007710 7.6e-126 454.5 341 63.0
MELO3C002557.2 Cucumis melo HOM05D006195 ORTHO05D007710 1.4e-124 450.3 339 64.3
Lj4g0017156 Lotus japonicus HOM05D006195 ORTHO05D007710 1.6e-123 446.8 336 62.2
FAN25G3765 Fragaria x ananassa HOM05D006195 ORTHO05D007710 1.6e-120 436.8 375 59.5
DCAR_008069 Daucus carota HOM05D006195 ORTHO05D007710 8.1e-120 434.5 347 61.1
Mapoly0082s0056 Marchantia polymorpha HOM05D006195 ORTHO05D007710 1.4e-119 433.7 370 55.1
AagrBONN_evm.TU.Sc2ySwM_344.4192 Anthoceros agrestis HOM05D006195 ORTHO05D007710 5.3e-119 431.8 344 59.3
Ah.14g088920 Amaranthus hybridus HOM05D006195 ORTHO05D007710 2.2e-117 426.4 292 68.8
FAN21G3429 Fragaria x ananassa HOM05D006195 ORTHO05D007710 1.1e-113 414.1 367 58.0
Nitab4.5_0000190g0110 Nicotiana tabacum HOM05D006195 ORTHO05D007710 2.0e-110 403.3 331 60.1
Hund23609 Selenicereus undatus HOM05D006195 ORTHO05D007710 1.7e-109 400.2 322 62.1
CBR_g41455 Chara braunii HOM05D006195 ORTHO05D007710 4.8e-104 382.1 361 50.4
SMO137G0351 Selaginella moellendorffii HOM05D006195 ORTHO05D007710 4.8e-104 382.1 323 57.3
MBI14_g13652_MAGBIO Magnolia biondii HOM05D006195 ORTHO05D007710 1.1e-103 380.9 336 58.0
CBR_g20417 Chara braunii HOM05D006195 ORTHO05D007710 2.0e-102 376.7 360 50.6
AUR62016899 Chenopodium quinoa HOM05D006195 ORTHO05D007710 2.2e-101 373.2 329 58.4
unitig_37.g12337 Utricularia gibba HOM05D006195 ORTHO05D007710 2.6e-94 349.7 373 50.9
Psat7g108560 Pisum sativum HOM05D006195 ORTHO05D007710 5.5e-92 342.0 241 67.2
Dinv40483 Davidia involucrata HOM05D006195 ORTHO05D007710 4.3e-89 332.4 224 69.6
SMO116G0485 Selaginella moellendorffii HOM05D006195 ORTHO05D007710 2.4e-79 300.1 277 54.2
Cre07.g326350 Chlamydomonas reinhardtii HOM05D006195 ORTHO05D007710 6.5e-77 292.0 337 45.4
TPR.G37128 Trifolium pratense HOM05D006195 ORTHO05D007710 1.0e-69 268.1 180 69.4
SalBow6G2099 Salvia bowleyana HOM05D006195 ORTHO05D007710 2.9e-69 266.5 167 73.7
SalBow6G4337 Salvia bowleyana HOM05D006195 ORTHO05D007710 2.9e-69 266.5 167 73.7
MCO07G204 Micromonas commoda HOM05D006195 ORTHO05D007710 4.2e-68 262.7 333 44.1
Potri.004G034600 Populus trichocarpa HOM05D006195 ORTHO05D007710 2.1e-67 260.4 238 55.5
HPP92_018057 Vanilla planifolia HOM05D006195 ORTHO05D007710 1.4e-63 247.7 215 57.7
Eucgr.L01396 Eucalyptus grandis HOM05D006195 ORTHO05D007710 4.5e-62 242.7 189 61.4
Nn1g03899 Nelumbo nucifera HOM05D006195 ORTHO05D007710 5.0e-61 239.2 374 42.2
SalBow1G5137 Salvia bowleyana HOM05D006195 ORTHO05D007710 6.8e-58 228.8 146 72.6
GSVIVG01003189001 Vitis vinifera HOM05D006195 ORTHO05D007710 6.6e-45 185.7 128 62.5
SalBow4G2205 Salvia bowleyana HOM05D006195 ORTHO05D007710 2.8e-43 180.3 99 79.8
Manes.10G084901 Manihot esculenta HOM05D006195 ORTHO05D007710 1.2e-38 164.9 127 64.6
SalBow1G7985 Salvia bowleyana HOM05D006195 ORTHO05D007710 1.5e-36 157.9 117 65.8
PRCOL_00004057 Prasinoderma coloniale HOM05D006195 ORTHO05D007710 2.1e-35 154.1 284 33.5
Nitab4.5_0003834g0010 Nicotiana tabacum HOM05D006195 ORTHO05D007710 8.9e-34 148.7 81 79.0
CSS0050458 Camellia sinensis var. sinensis HOM05D000911 ORTHO05D007710 9.8e-33 145.2 89 68.5
Thecc.06G199100 Theobroma cacao HOM05D006195 ORTHO05D007710 1.7e-32 144.4 103 63.1
SHI02125 Sapria himalayana HOM05D006195 ORTHO05D007710 1.1e-31 141.7 123 55.3
Dinv18994 Davidia involucrata HOM05D006195 ORTHO05D007710 1.4e-31 141.4 131 56.5
SHI48938 Sapria himalayana HOM05D006195 ORTHO05D007710 1.0e-29 135.2 138 50.7
SEGI_17138 Sequoiadendron giganteum HOM05D006195 ORTHO05D007710 3.9e-29 133.3 80 70.0
SHI02124 Sapria himalayana HOM05D006195 ORTHO05D007710 1.1e-12 78.6 164 37.2
QL05p027149 Quercus lobata HOM05D003006 ORTHO05D003438 4.4e-09 66.6 226 25.2
SEGI_22791 Sequoiadendron giganteum HOM05D003006 ORTHO05D003438 4.4e-09 66.6 248 25.0
Lsat_1_v5_gn_4_104701 Lactuca sativa HOM05D003006 ORTHO05D003438 5.8e-09 66.2 226 25.7
Solyc03g120010.4 Solanum lycopersicum HOM05D003006 ORTHO05D003438 5.8e-09 66.2 227 24.7
Sopen03g038890 Solanum pennellii HOM05D003006 ORTHO05D003438 5.8e-09 66.2 227 24.7
PGSC0003DMG400005609 Solanum tuberosum HOM05D003006 ORTHO05D003438 5.8e-09 66.2 227 24.7
DCAR_021326 Daucus carota HOM05D003006 ORTHO05D003438 7.6e-09 65.9 226 24.3
ECA232G1270 Erigeron canadensis HOM05D003006 ORTHO05D003438 1.7e-08 64.7 226 25.7
A06p11540 Brassica napus HOM05D003006 ORTHO05D002838 2.9e-08 63.9 273 23.1
BraA06t24328Z Brassica rapa HOM05D003006 ORTHO05D003438 4.9e-08 63.2 273 22.7
HPP92_018063 Vanilla planifolia HOM05D006195 ORTHO05D007710 4.9e-08 63.2 97 40.2
PSO675G6008 Papaver somniferum HOM05D003825 ORTHO05D004491 8.4e-08 62.4 301 23.3
AL1G27590 Arabidopsis lyrata HOM05D003006 ORTHO05D003438 1.4e-07 61.6 217 25.3
AT1G15470 Arabidopsis thaliana HOM05D003006 ORTHO05D003438 1.4e-07 61.6 217 25.3
BcaB03g14537 Brassica carinata HOM05D003006 ORTHO05D003438 1.4e-07 61.6 217 24.9
AUR62043984 Chenopodium quinoa HOM05D002999 ORTHO05D003137 1.9e-07 61.2 212 24.5
Nitab4.5_0004238g0040 Nicotiana tabacum HOM05D002999 ORTHO05D003137 1.9e-07 61.2 201 24.4
BcaC07g41499 Brassica carinata HOM05D003006 ORTHO05D003438 3.2e-07 60.5 246 24.4
BolC8t52040H Brassica oleracea HOM05D003006 ORTHO05D003438 3.2e-07 60.5 246 24.4
EL10Ac9g21730 Beta vulgaris HOM05D003825 ORTHO05D004491 4.2e-07 60.1 227 25.1
C08p44930 Brassica napus HOM05D003006 ORTHO05D003438 4.2e-07 60.1 246 24.4
Os11g0660300 Oryza sativa ssp. japonica HOM05D005151 ORTHO05D006322 4.2e-07 60.1 240 24.2
BcaC07g41498 Brassica carinata HOM05D003006 ORTHO05D003438 5.4e-07 59.7 217 24.4
CARHR016020 Cardamine hirsuta HOM05D003006 ORTHO05D003438 5.4e-07 59.7 217 24.9
Hma1.2p1_1375F.1_g279040 Hydrangea macrophylla HOM05D003825 ORTHO05D004491 7.1e-07 59.3 226 23.5
TWI75G0614 Tripterygium wilfordii HOM05D003825 ORTHO05D004491 1.6e-06 58.2 225 23.1
Zm00001eb052290 Zea mays HOM05D003825 ORTHO05D004491 1.6e-06 58.2 231 21.2
Nitab4.5_0004172g0080 Nicotiana tabacum HOM05D003825 ORTHO05D004491 3.5e-06 57.0 225 24.4
Psat5g006200 Pisum sativum HOM05D003825 ORTHO05D004491 3.5e-06 57.0 213 23.9
Sc19g0004770 Simmondsia chinensis HOM05D002999 ORTHO05D003137 3.5e-06 57.0 240 22.9
Aqoxy6G01089 Aquilegia oxysepala HOM05D003825 ORTHO05D004491 6.0e-06 56.2 276 23.6
BolC1t00419H Brassica oleracea HOM05D003825 ORTHO05D004491 7.8e-06 55.8 253 23.7
Potri.009G115300 Populus trichocarpa HOM05D003825 ORTHO05D004491 7.8e-06 55.8 226 23.9
Hund06228 Selenicereus undatus HOM05D003825 ORTHO05D004491 7.8e-06 55.8 226 23.9
Sc18g0004560 Simmondsia chinensis HOM05D003825 ORTHO05D004491 7.8e-06 55.8 216 23.6
TAR381G1531 Trochodendron aralioides HOM05D003825 ORTHO05D004491 7.8e-06 55.8 225 24.4


User provided reference genes

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