Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE11G0434 Ceratophyllum demersum HOM05D002205 ORTHO05D004847 1.3e-63 246.1 116 100.0
CDE05G1148 Ceratophyllum demersum HOM05D002205 ORTHO05D004847 2.4e-25 119.0 68 82.4
Gohir.D06G203600 Gossypium hirsutum HOM05D002205 ORTHO05D004847 1.1e-14 83.6 70 55.7
Gorai.010G237500 Gossypium raimondii HOM05D002205 ORTHO05D004847 1.1e-14 83.6 70 55.7
Aqoxy1G01658 Aquilegia oxysepala HOM05D002205 ORTHO05D004847 5.5e-14 81.3 61 59.0
Gohir.A06G196100 Gossypium hirsutum HOM05D002205 ORTHO05D004847 5.5e-14 81.3 70 54.3
Cpa.g.sc17.50 Carica papaya HOM05D002205 ORTHO05D004847 9.4e-14 80.5 68 58.8
TAR627G0288 Trochodendron aralioides HOM05D002205 ORTHO05D004847 1.2e-13 80.1 68 57.4
ECA234G0538 Erigeron canadensis HOM05D002205 ORTHO05D004847 1.6e-13 79.7 61 59.0
Dinv32214 Davidia involucrata HOM05D002205 ORTHO05D004847 2.7e-13 79.0 55 63.6
PSO541G1418 Papaver somniferum HOM05D002205 ORTHO05D004847 3.6e-13 78.6 61 59.0
HanXRQChr17g0564031 Helianthus annuus HOM05D002205 ORTHO05D004847 4.7e-13 78.2 61 62.3
ClCG03G006500 Citrullus lanatus HOM05D002205 ORTHO05D004847 8.0e-13 77.4 49 63.3
CANSAT35G0337 Cannabis sativa HOM05D002205 ORTHO05D004847 1.0e-12 77.0 60 58.3
Lsat_1_v5_gn_4_29840 Lactuca sativa HOM05D002205 ORTHO05D004847 1.0e-12 77.0 61 59.0
Nn3g20332 Nelumbo nucifera HOM05D002205 ORTHO05D004847 1.0e-12 77.0 63 60.3
QL05p055095 Quercus lobata HOM05D002205 ORTHO05D004847 1.4e-12 76.6 47 68.1
Sed0018770 Sechium edule HOM05D002205 ORTHO05D004847 1.4e-12 76.6 49 63.3
MSTRG.7513 Avicennia marina HOM05D002205 ORTHO05D004847 1.8e-12 76.3 75 49.3
CiPaw.09G119700 Carya illinoinensis HOM05D002205 ORTHO05D004847 2.3e-12 75.9 67 55.2
Dinv21519 Davidia involucrata HOM05D002205 ORTHO05D004847 2.3e-12 75.9 45 66.7
Ca_00510_v3 Cicer arietinum L. HOM05D002205 ORTHO05D004847 3.0e-12 75.5 55 58.2
Sc05g0005980 Simmondsia chinensis HOM05D002205 ORTHO05D004847 3.0e-12 75.5 77 49.4
Thecc.06G144400 Theobroma cacao HOM05D002205 ORTHO05D004847 3.0e-12 75.5 76 48.7
MELO3C002770.2 Cucumis melo HOM05D002205 ORTHO05D004847 4.0e-12 75.1 49 63.3
Manes.17G074200 Manihot esculenta HOM05D002205 ORTHO05D004847 4.0e-12 75.1 45 71.1
vmacro03432 Vaccinium macrocarpon HOM05D002205 ORTHO05D004847 4.0e-12 75.1 45 68.9
GSVIVG01021548001 Vitis vinifera HOM05D002205 ORTHO05D004847 4.0e-12 75.1 68 52.9
Actinidia13441 Actinidia chinensis HOM05D002205 ORTHO05D004847 5.2e-12 74.7 45 68.9
EL10Ac8g19627 Beta vulgaris HOM05D002205 ORTHO05D004847 5.2e-12 74.7 51 60.8
Duzib192G0694 Durio zibethinus HOM05D002205 ORTHO05D004847 5.2e-12 74.7 45 68.9
Gohir.D06G144600 Gossypium hirsutum HOM05D002205 ORTHO05D004847 5.2e-12 74.7 45 66.7
Gorai.010G168300 Gossypium raimondii HOM05D002205 ORTHO05D004847 5.2e-12 74.7 45 66.7
MBI18_g11219_MAGBIO Magnolia biondii HOM05D002205 ORTHO05D004847 5.2e-12 74.7 47 61.7
Medtr2g018660 Medicago truncatula HOM05D002205 ORTHO05D004847 5.2e-12 74.7 59 55.9
Nitab4.5_0000315g0040 Nicotiana tabacum HOM05D002205 ORTHO05D004847 5.2e-12 74.7 45 68.9
Oeu015213.1 Olea europaea HOM05D002205 ORTHO05D004847 5.2e-12 74.7 45 68.9
Os12g0615500 Oryza sativa ssp. japonica HOM05D002205 ORTHO05D004847 5.2e-12 74.7 45 71.1
Psat1g192120 Pisum sativum HOM05D002205 ORTHO05D004847 5.2e-12 74.7 55 60.0
Zm00001eb031800 Zea mays HOM05D002205 ORTHO05D004847 6.8e-12 74.3 45 71.1
CsaV3_1G036870 Cucumis sativus L. HOM05D002205 ORTHO05D004847 8.8e-12 73.9 49 61.2
Lj1C1169G11 Lonicera japonica HOM05D002205 ORTHO05D004847 8.8e-12 73.9 59 54.2
Manes.01G173000 Manihot esculenta HOM05D002205 ORTHO05D004847 8.8e-12 73.9 65 52.3
Atru.chr10.1083 Acer truncatum HOM05D002205 ORTHO05D004847 1.2e-11 73.6 45 66.7
arahy.Tifrunner.gnm1.ann1.4B2CWV Arachis hypogaea HOM05D002205 ORTHO05D004847 1.2e-11 73.6 45 62.2
arahy.Tifrunner.gnm1.ann1.WT34VK Arachis hypogaea HOM05D002205 ORTHO05D004847 1.2e-11 73.6 45 62.2
Cc00_g02010 Coffea canephora HOM05D002205 ORTHO05D004847 1.2e-11 73.6 61 57.4
Migut.M00880 Erythranthe guttata HOM05D002205 ORTHO05D004847 1.5e-11 73.2 61 55.7
Glyma.13G221800 Glycine max HOM05D002205 ORTHO05D004847 1.5e-11 73.2 45 62.2
Manes.01G173100 Manihot esculenta HOM05D002205 ORTHO05D004847 1.5e-11 73.2 61 52.5
Rhsim13G0117600 Rhododendron simsii HOM05D002205 ORTHO05D004847 1.5e-11 73.2 45 62.2
HPP92_018659 Vanilla planifolia HOM05D002205 ORTHO05D004847 1.5e-11 73.2 45 71.1
Actinidia09937 Actinidia chinensis HOM05D002205 ORTHO05D004847 2.0e-11 72.8 45 66.7
BcaB07g32640 Brassica carinata HOM05D002205 ORTHO05D004847 2.0e-11 72.8 45 68.9
BcaC05g27062 Brassica carinata HOM05D002205 ORTHO05D004847 2.0e-11 72.8 45 68.9
A09p36150 Brassica napus HOM05D002205 ORTHO05D004847 2.0e-11 72.8 45 68.9
C05p29210 Brassica napus HOM05D002205 ORTHO05D004847 2.0e-11 72.8 45 68.9
BolC5t31653H Brassica oleracea HOM05D002205 ORTHO05D004847 2.0e-11 72.8 45 68.9
BraA09t39142Z Brassica rapa HOM05D002205 ORTHO05D004847 2.0e-11 72.8 45 68.9
Cfa000899 Carpinus fangiana HOM05D002205 ORTHO05D004847 2.0e-11 72.8 47 63.8
Haze_05676 Corylus avellana HOM05D002205 ORTHO05D004847 2.0e-11 72.8 61 55.7
Glyma.15G090400 Glycine max HOM05D002205 ORTHO05D004847 2.6e-11 72.4 45 62.2
Rhsim13G0117500 Rhododendron simsii HOM05D002205 ORTHO05D004847 2.6e-11 72.4 45 62.2
SGA_v2.0_scaffold120G32940 Striga asiatica HOM05D002205 ORTHO05D004847 2.6e-11 72.4 45 64.4
Ah.14g086280 Amaranthus hybridus HOM05D002205 ORTHO05D004847 4.4e-11 71.6 58 55.2
CSS0050225 Camellia sinensis var. sinensis HOM05D002205 ORTHO05D004847 4.4e-11 71.6 44 65.9
Hma1.2p1_0318F.1_g123750 Hydrangea macrophylla HOM05D002205 ORTHO05D004847 5.7e-11 71.2 58 55.2
Nitab4.5_0002071g0030 Nicotiana tabacum HOM05D002205 ORTHO05D004847 5.7e-11 71.2 45 66.7
TWI73G0911 Tripterygium wilfordii HOM05D002205 ORTHO05D004847 5.7e-11 71.2 73 47.9
AT1G30300 Arabidopsis thaliana HOM05D002205 ORTHO05D004847 7.5e-11 70.9 68 54.4
Duzib235G1243 Durio zibethinus HOM05D002205 ORTHO05D004847 7.5e-11 70.9 45 64.4
AUR62030135 Chenopodium quinoa HOM05D002205 ORTHO05D004847 9.8e-11 70.5 47 59.6
Solyc08g023500.4 Solanum lycopersicum HOM05D002205 ORTHO05D004847 9.8e-11 70.5 45 64.4
PGSC0003DMG400002293 Solanum tuberosum HOM05D002205 ORTHO05D004847 9.8e-11 70.5 47 61.7
Potri.011G081600 Populus trichocarpa HOM05D002205 ORTHO05D004847 1.3e-10 70.1 45 62.2
Rhsim09G0051000 Rhododendron simsii HOM05D002205 ORTHO05D004847 1.3e-10 70.1 51 54.9
Aa31LG6G5440 Aethionema arabicum HOM05D002205 ORTHO05D004847 1.7e-10 69.7 45 66.7
A08p24530 Brassica napus HOM05D002205 ORTHO05D004847 1.7e-10 69.7 61 52.5
DCAR_027888 Daucus carota HOM05D002205 ORTHO05D004847 1.7e-10 69.7 45 62.2
Thhalv10028809m.g Eutrema salsugineum HOM05D002205 ORTHO05D004847 1.7e-10 69.7 58 55.2
Lalb_Chr15g0086621 Lupinus albus HOM05D002205 ORTHO05D004847 1.7e-10 69.7 65 47.7
Sed0018506 Sechium edule HOM05D002205 ORTHO05D004847 1.7e-10 69.7 45 62.2
Carub.0006s3345 Capsella rubella HOM05D002205 ORTHO05D004847 2.2e-10 69.3 54 57.4
CAN.G103.15 Capsicum annuum HOM05D002205 ORTHO05D004847 2.2e-10 69.3 71 49.3
CARHR029690 Cardamine hirsuta HOM05D002205 ORTHO05D004847 2.2e-10 69.3 45 66.7
Lj6g0014068 Lotus japonicus HOM05D002205 ORTHO05D004847 2.2e-10 69.3 68 45.6
PGR083G2813 Punica granatum HOM05D002205 ORTHO05D004847 2.2e-10 69.3 47 59.6
Sabra11G0065700 Salix brachista HOM05D002205 ORTHO05D004847 2.2e-10 69.3 75 45.3
Sopen08g008680 Solanum pennellii HOM05D002205 ORTHO05D004847 2.2e-10 69.3 45 64.4
TPR.G26265 Trifolium pratense HOM05D002205 ORTHO05D004847 2.2e-10 69.3 60 51.7
AL1G44250 Arabidopsis lyrata HOM05D002205 ORTHO05D004847 2.8e-10 68.9 68 54.4
BcaB03g12208 Brassica carinata HOM05D002205 ORTHO05D004847 2.8e-10 68.9 45 64.4
BcaC01g00182 Brassica carinata HOM05D002205 ORTHO05D004847 2.8e-10 68.9 45 64.4
C03p76660 Brassica napus HOM05D002205 ORTHO05D004847 2.8e-10 68.9 45 64.4
BolC3t19922H Brassica oleracea HOM05D002205 ORTHO05D004847 2.8e-10 68.9 45 64.4
BraA08t34409Z Brassica rapa HOM05D002205 ORTHO05D004847 2.8e-10 68.9 45 64.4
Carub.0001s2853 Capsella rubella HOM05D002205 ORTHO05D004847 2.8e-10 68.9 45 64.4
Ciclev10015916m.g Citrus clementina HOM05D002205 ORTHO05D004847 2.8e-10 68.9 91 40.7
FAN21G0057 Fragaria x ananassa HOM05D002205 ORTHO05D004847 2.8e-10 68.9 45 62.2
FAN25G1086 Fragaria x ananassa HOM05D002205 ORTHO05D004847 2.8e-10 68.9 58 53.4
SHI10512 Sapria himalayana HOM05D002205 ORTHO05D004847 2.8e-10 68.9 72 48.6
FvH4_3g05040 Fragaria vesca HOM05D002205 ORTHO05D004847 3.7e-10 68.6 45 62.2
Peaxi162Scf00045g02427 Petunia axillaris HOM05D002205 ORTHO05D004847 3.7e-10 68.6 45 62.2
VMungo0540G1690 Vigna mungo HOM05D002205 ORTHO05D004847 3.7e-10 68.6 45 60.0
Aa31LG9G8880 Aethionema arabicum HOM05D002205 ORTHO05D004847 4.8e-10 68.2 55 56.4
Thhalv10008197m.g Eutrema salsugineum HOM05D002205 ORTHO05D004847 4.8e-10 68.2 45 64.4
Sp1g26160 Schrenkiella parvula HOM05D002205 ORTHO05D004847 4.8e-10 68.2 45 64.4
THA.LOC104812309 Tarenaya hassleriana HOM05D002205 ORTHO05D004847 4.8e-10 68.2 56 53.6
Zm00001eb050530 Zea mays HOM05D002205 ORTHO05D004847 4.8e-10 68.2 47 59.6
Os03g0643250 Oryza sativa ssp. japonica HOM05D002205 ORTHO05D004847 6.3e-10 67.8 47 61.7
Zm00001eb083760 Zea mays HOM05D002205 ORTHO05D004847 6.3e-10 67.8 48 58.3
C09p02950 Brassica napus HOM05D002205 ORTHO05D004847 8.3e-10 67.4 68 47.1
RcHm_v2.0_Chr5g0014931 Rosa chinensis HOM05D002205 ORTHO05D004847 8.3e-10 67.4 45 57.8
AL6G49170 Arabidopsis lyrata HOM05D002205 ORTHO05D004847 1.1e-09 67.0 45 62.2
AT4G03610 Arabidopsis thaliana HOM05D002205 ORTHO05D004847 1.1e-09 67.0 45 62.2
BcaB01g01908 Brassica carinata HOM05D002205 ORTHO05D004847 1.1e-09 67.0 45 62.2
A09p02870 Brassica napus HOM05D002205 ORTHO05D004847 1.1e-09 67.0 45 62.2
BraA09t35932Z Brassica rapa HOM05D002205 ORTHO05D004847 1.1e-09 67.0 45 62.2
CARHR252020 Cardamine hirsuta HOM05D002205 ORTHO05D004847 1.1e-09 67.0 45 62.2
FAN16G1117 Fragaria x ananassa HOM05D002205 ORTHO05D004847 1.1e-09 67.0 68 48.5
Phvul.006G168145 Phaseolus vulgaris HOM05D002205 ORTHO05D004847 1.4e-09 66.6 45 57.8
VMungo0251G0380 Vigna mungo HOM05D002205 ORTHO05D004847 1.4e-09 66.6 56 51.8
arahy.Tifrunner.gnm1.ann1.GW4I6G Arachis hypogaea HOM05D002205 ORTHO05D004847 1.8e-09 66.2 45 57.8
FAN11G0257 Fragaria x ananassa HOM05D002205 ORTHO05D004847 1.8e-09 66.2 45 60.0
MD05G1279500 Malus domestica HOM05D002205 ORTHO05D004847 2.4e-09 65.9 45 62.2
Phvul.002G178000 Phaseolus vulgaris HOM05D002205 ORTHO05D004847 3.1e-09 65.5 56 50.0
Sp6g03600 Schrenkiella parvula HOM05D002205 ORTHO05D004847 3.1e-09 65.5 58 51.7
EL10As2g23264 Beta vulgaris HOM05D002205 ORTHO05D004847 4.1e-09 65.1 79 44.3
BcaB01g02544 Brassica carinata HOM05D002205 ORTHO05D004847 5.4e-09 64.7 68 50.0
BcaC01g06666 Brassica carinata HOM05D002205 ORTHO05D004847 5.4e-09 64.7 45 60.0
A03p30340 Brassica napus HOM05D002205 ORTHO05D004847 5.4e-09 64.7 45 60.0
C03p36630 Brassica napus HOM05D002205 ORTHO05D004847 5.4e-09 64.7 45 60.0
BolC3t15977H Brassica oleracea HOM05D002205 ORTHO05D004847 5.4e-09 64.7 45 60.0
BraA03t12216Z Brassica rapa HOM05D002205 ORTHO05D004847 5.4e-09 64.7 45 60.0
Glyma.05G143300 Glycine max HOM05D002205 ORTHO05D004847 5.4e-09 64.7 59 49.2
Lj4g0000856 Lotus japonicus HOM05D002205 ORTHO05D004847 5.4e-09 64.7 45 55.6
BcaC04g23959 Brassica carinata HOM05D002205 ORTHO05D004847 7.0e-09 64.3 45 60.0
BolC9t53222H Brassica oleracea HOM05D002205 ORTHO05D004847 7.0e-09 64.3 45 60.0
Prupe.4G085600 Prunus persica HOM05D002205 ORTHO05D004847 3.5e-08 62.0 45 60.0
Os03g0642900 Oryza sativa ssp. japonica HOM05D002205 ORTHO05D004847 4.5e-08 61.6 44 54.5
MD10G1258200 Malus domestica HOM05D002205 ORTHO05D004847 5.9e-08 61.2 45 57.8
Glyma.08G099700 Glycine max HOM05D002205 ORTHO05D004847 7.7e-08 60.8 55 50.9
ATR1098G096 Amborella trichopoda HOM05D002205 ORTHO05D004847 1.3e-07 60.1 45 51.1
Mapoly0054s0026 Marchantia polymorpha HOM05D002205 ORTHO05D004847 1.7e-07 59.7 60 43.3
SEGI_24320 Sequoiadendron giganteum HOM05D002205 ORTHO05D004847 2.9e-07 58.9 45 53.3
Duzib251G0615 Durio zibethinus HOM05D003369 ORTHO05D004089 6.6e-07 57.8 45 57.8
unitig_37.g12087 Utricularia gibba HOM05D002205 ORTHO05D004847 1.1e-06 57.0 44 50.0
SMO118G0510 Selaginella moellendorffii HOM05D002205 ORTHO05D004847 1.5e-06 56.6 59 45.8


User provided reference genes

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