Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE11G0336 Ceratophyllum demersum HOM05D002428 ORTHO05D005085 3.5e-228 794.7 412 100.0
CDE09G0695 Ceratophyllum demersum HOM05D002428 ORTHO05D005085 1.8e-184 649.4 378 91.5
Nn3g19943 Nelumbo nucifera HOM05D002428 ORTHO05D005085 7.8e-95 351.7 374 53.2
MBI10_g05704_MAGBIO Magnolia biondii HOM05D002428 ORTHO05D005085 2.3e-94 350.1 380 51.3
Nn1g07810 Nelumbo nucifera HOM05D002428 ORTHO05D005085 3.6e-92 342.8 374 52.4
TAR362G0527 Trochodendron aralioides HOM05D002428 ORTHO05D005085 6.6e-86 322.0 385 49.1
CSS0050051 Camellia sinensis var. sinensis HOM05D002428 ORTHO05D005085 4.0e-83 312.8 386 45.6
Actinidia35873 Actinidia chinensis HOM05D002428 ORTHO05D005085 3.4e-82 309.7 374 46.8
CSS0020338 Camellia sinensis var. sinensis HOM05D002428 ORTHO05D005085 4.2e-80 302.8 386 44.8
Aqoxy5G00065 Aquilegia oxysepala HOM05D002428 ORTHO05D005085 9.3e-80 301.6 378 47.9
GSVIVG01021082001 Vitis vinifera HOM05D002428 ORTHO05D005085 4.6e-79 299.3 383 44.4
Haze_11595 Corylus avellana HOM05D002428 ORTHO05D005085 3.9e-78 296.2 383 45.2
Sabra01G0034700 Salix brachista HOM05D002428 ORTHO05D005085 6.6e-78 295.4 404 44.1
Dinv38249 Davidia involucrata HOM05D002428 ORTHO05D005085 2.1e-76 290.4 325 50.2
Atru.chr4.1736 Acer truncatum HOM05D002428 ORTHO05D005085 2.8e-76 290.0 385 44.2
PSO170G6100 Papaver somniferum HOM05D002428 ORTHO05D005085 1.8e-75 287.3 371 43.9
EL10Ac3g07490 Beta vulgaris HOM05D002428 ORTHO05D005085 5.3e-75 285.8 370 46.8
Dinv29583 Davidia involucrata HOM05D002428 ORTHO05D005085 5.3e-75 285.8 366 45.9
Sc13g0000100 Simmondsia chinensis HOM05D002428 ORTHO05D005085 6.9e-75 285.4 373 45.8
Potri.001G049800 Populus trichocarpa HOM05D002428 ORTHO05D005085 9.0e-75 285.0 380 44.2
Ciclev10005183m.g Citrus clementina HOM05D002428 ORTHO05D005085 5.8e-74 282.3 387 43.7
PSO674G0088 Papaver somniferum HOM05D002428 ORTHO05D005085 9.9e-74 281.6 390 42.1
Eucgr.H02858 Eucalyptus grandis HOM05D002428 ORTHO05D005085 1.7e-73 280.8 383 44.1
Manes.03G149000 Manihot esculenta HOM05D002428 ORTHO05D005085 1.7e-73 280.8 385 44.9
Thecc.04G206400 Theobroma cacao HOM05D002428 ORTHO05D005085 6.4e-73 278.9 359 45.4
Potri.003G178400 Populus trichocarpa HOM05D002428 ORTHO05D005085 1.1e-72 278.1 382 44.0
Duzib151G0814 Durio zibethinus HOM05D002428 ORTHO05D005085 2.4e-72 276.9 358 45.3
Gohir.D09G197800 Gossypium hirsutum HOM05D002428 ORTHO05D005085 3.2e-72 276.6 358 45.5
RcHm_v2.0_Chr4g0385911 Rosa chinensis HOM05D002428 ORTHO05D005085 4.2e-72 276.2 356 43.5
MSTRG.9822 Avicennia marina HOM05D002428 ORTHO05D005085 9.3e-72 275.0 373 45.3
Gorai.006G221300 Gossypium raimondii HOM05D002428 ORTHO05D005085 1.2e-71 274.6 358 45.0
PGR031G3462 Punica granatum HOM05D002428 ORTHO05D005085 1.2e-71 274.6 381 43.6
Gohir.A09G204000 Gossypium hirsutum HOM05D002428 ORTHO05D005085 2.1e-71 273.9 358 45.0
ATR0736G031 Amborella trichopoda HOM05D002428 ORTHO05D005085 7.9e-71 271.9 333 46.2
Lalb_Chr20g0120151 Lupinus albus HOM05D002428 ORTHO05D005085 1.0e-70 271.6 369 41.7
Rhsim09G0054900 Rhododendron simsii HOM05D002428 ORTHO05D005085 1.3e-70 271.2 339 44.5
FAN12G1312 Fragaria x ananassa HOM05D002428 ORTHO05D005085 1.7e-70 270.8 373 42.4
Cc03_g07640 Coffea canephora HOM05D002428 ORTHO05D005085 3.0e-70 270.0 384 41.4
CiPaw.01G122700 Carya illinoinensis HOM05D002428 ORTHO05D005085 3.9e-70 269.6 379 42.0
Gohir.A02G023600 Gossypium hirsutum HOM05D002428 ORTHO05D005085 6.6e-70 268.9 358 45.0
FvH4_4g00480 Fragaria vesca HOM05D002428 ORTHO05D005085 2.5e-69 266.9 373 41.8
QL06p024041 Quercus lobata HOM05D002428 ORTHO05D005085 2.5e-69 266.9 358 42.7
Lsat_1_v5_gn_6_59860 Lactuca sativa HOM05D002428 ORTHO05D005085 3.3e-69 266.5 373 40.8
Prupe.1G005000 Prunus persica HOM05D002428 ORTHO05D005085 9.6e-69 265.0 358 44.4
HanXRQChr15g0484251 Helianthus annuus HOM05D002428 ORTHO05D005085 3.6e-68 263.1 378 40.5
RcHm_v2.0_Chr4g0385791 Rosa chinensis HOM05D002428 ORTHO05D005085 3.6e-68 263.1 339 44.5
MD04G1005200 Malus domestica HOM05D002428 ORTHO05D005085 6.2e-68 262.3 371 42.6
MD07G1287300 Malus domestica HOM05D002428 ORTHO05D005085 6.2e-68 262.3 371 42.6
CANSAT78G0072 Cannabis sativa HOM05D002428 ORTHO05D005085 8.1e-68 261.9 375 43.7
Migut.G00669 Erythranthe guttata HOM05D002428 ORTHO05D005085 2.4e-67 260.4 386 42.2
COL.COLO4_20262 Corchorus olitorius HOM05D002428 ORTHO05D005085 6.9e-67 258.8 326 46.0
Lalb_Chr18g0058061 Lupinus albus HOM05D002428 ORTHO05D005085 9.0e-67 258.5 372 39.8
MD04G1005300 Malus domestica HOM05D002428 ORTHO05D005085 1.5e-66 257.7 371 42.3
vmacro00484 Vaccinium macrocarpon HOM05D002428 ORTHO05D005085 3.4e-66 256.5 310 44.8
Ca_00857_v3 Cicer arietinum L. HOM05D002428 ORTHO05D005085 4.5e-66 256.1 356 41.6
Manes.15G052100 Manihot esculenta HOM05D002428 ORTHO05D005085 4.5e-66 256.1 330 47.9
Glyma.15G131900 Glycine max HOM05D002428 ORTHO05D005085 5.8e-66 255.8 377 40.6
Gohir.D10G143200 Gossypium hirsutum HOM05D002428 ORTHO05D005085 5.8e-66 255.8 358 42.5
Medtr2g030560 Medicago truncatula HOM05D002428 ORTHO05D005085 5.8e-66 255.8 370 40.5
Gohir.A10G122900 Gossypium hirsutum HOM05D002428 ORTHO05D005085 1.3e-65 254.6 358 42.2
Lj6g0025937 Lotus japonicus HOM05D002428 ORTHO05D005085 1.3e-65 254.6 382 39.5
Gorai.011G160000 Gossypium raimondii HOM05D002428 ORTHO05D005085 1.7e-65 254.2 358 42.2
TPR.G26368 Trifolium pratense HOM05D002428 ORTHO05D005085 1.7e-65 254.2 370 41.1
Gohir.D02G031000 Gossypium hirsutum HOM05D002428 ORTHO05D005085 4.9e-65 252.7 358 42.7
Gorai.005G034400 Gossypium raimondii HOM05D002428 ORTHO05D005085 4.9e-65 252.7 358 43.3
SalBow8G0494 Salvia bowleyana HOM05D002428 ORTHO05D005085 4.9e-65 252.7 382 40.8
FAN22G0466 Fragaria x ananassa HOM05D002428 ORTHO05D005085 1.1e-64 251.5 369 40.4
Glyma.09G025700 Glycine max HOM05D002428 ORTHO05D005085 1.6e-63 247.7 377 39.8
Oeu018226.1 Olea europaea HOM05D002428 ORTHO05D005085 2.1e-63 247.3 351 42.5
Lsat_1_v5_gn_2_45560 Lactuca sativa HOM05D002428 ORTHO05D005085 3.5e-63 246.5 382 40.6
ECA238G3133 Erigeron canadensis HOM05D002428 ORTHO05D005085 1.0e-62 245.0 339 44.5
Phvul.006G126700 Phaseolus vulgaris HOM05D002428 ORTHO05D005085 1.3e-62 244.6 376 39.1
Eucgr.G01177 Eucalyptus grandis HOM05D002428 ORTHO05D005085 5.1e-62 242.7 370 40.8
Sabra03G0130800 Salix brachista HOM05D002428 ORTHO05D005085 1.1e-61 241.5 367 40.1
Sed0008750 Sechium edule HOM05D002428 ORTHO05D005085 1.1e-61 241.5 370 41.6
Sopen09g034710 Solanum pennellii HOM05D002428 ORTHO05D005085 1.1e-61 241.5 382 40.6
Sed0022855 Sechium edule HOM05D002428 ORTHO05D005085 1.5e-61 241.1 368 40.5
ClCG05G003400 Citrullus lanatus HOM05D002428 ORTHO05D005085 1.9e-61 240.7 382 40.3
FAN17G2111 Fragaria x ananassa HOM05D002428 ORTHO05D005085 1.9e-61 240.7 413 37.8
PGSC0003DMG400029636 Solanum tuberosum HOM05D002428 ORTHO05D005085 1.9e-61 240.7 382 40.8
SGA_v2.0_scaffold72G24051 Striga asiatica HOM05D002428 ORTHO05D005085 4.3e-61 239.6 382 39.3
CAN.G500.14 Capsicum annuum HOM05D002428 ORTHO05D005085 1.6e-60 237.7 380 40.0
arahy.Tifrunner.gnm1.ann1.CV7WQS Arachis hypogaea HOM05D002428 ORTHO05D005085 8.1e-60 235.3 379 40.6
arahy.Tifrunner.gnm1.ann1.2WG9BE Arachis hypogaea HOM05D002428 ORTHO05D005085 1.1e-59 235.0 379 40.6
Nitab4.5_0003750g0010 Nicotiana tabacum HOM05D002428 ORTHO05D005085 1.4e-59 234.6 370 41.4
Thhalv10002585m.g Eutrema salsugineum HOM05D002428 ORTHO05D005085 2.4e-59 233.8 367 40.9
Peaxi162Scf00047g00728 Petunia axillaris HOM05D002428 ORTHO05D005085 2.4e-59 233.8 373 39.4
VMungo0540G1973 Vigna mungo HOM05D002428 ORTHO05D005085 5.3e-59 232.6 376 37.5
AL3G39100 Arabidopsis lyrata HOM05D002428 ORTHO05D005085 9.0e-59 231.9 374 39.8
HPP92_020844 Vanilla planifolia HOM05D002428 ORTHO05D005085 2.0e-58 230.7 382 38.2
TAR633G2286 Trochodendron aralioides HOM05D002428 ORTHO05D005085 2.6e-58 230.3 364 40.7
CsaV3_3G011070 Cucumis sativus L. HOM05D002428 ORTHO05D005085 1.0e-57 228.4 367 40.1
Psat7g008880 Pisum sativum HOM05D002428 ORTHO05D005085 1.0e-57 228.4 332 40.1
Sp3g21770 Schrenkiella parvula HOM05D002428 ORTHO05D005085 1.3e-57 228.0 367 39.8
Zm00001eb038510 Zea mays HOM05D002428 ORTHO05D005085 2.2e-57 227.3 373 40.5
DCAR_026601 Daucus carota HOM05D002428 ORTHO05D005085 3.8e-57 226.5 305 43.0
AUR62020812 Chenopodium quinoa HOM05D002428 ORTHO05D005085 4.9e-57 226.1 348 41.7
THA.LOC104808717 Tarenaya hassleriana HOM05D002428 ORTHO05D005085 6.5e-57 225.7 373 38.1
BcaB03g14602 Brassica carinata HOM05D002428 ORTHO05D005085 8.4e-57 225.3 356 39.9
Duzib212G0991 Durio zibethinus HOM05D002428 ORTHO05D005085 8.4e-57 225.3 374 39.8
Nitab4.5_0004974g0030 Nicotiana tabacum HOM05D002428 ORTHO05D005085 3.2e-56 223.4 382 38.7
A03p43460 Brassica napus HOM05D002428 ORTHO05D005085 5.5e-56 222.6 363 41.0
Os08g0567000 Oryza sativa ssp. japonica HOM05D002428 ORTHO05D005085 9.3e-56 221.9 346 40.5
AT3G24160 Arabidopsis thaliana HOM05D002428 ORTHO05D005085 1.2e-55 221.5 373 38.1
Actinidia25627 Actinidia chinensis HOM05D002428 ORTHO05D005085 2.1e-55 220.7 327 43.1
SEGI_17850 Sequoiadendron giganteum HOM05D002428 ORTHO05D005085 2.1e-55 220.7 331 40.8
BcaB04g20405 Brassica carinata HOM05D002428 ORTHO05D005085 2.7e-55 220.3 372 39.2
Carub.0003s2434 Capsella rubella HOM05D002428 ORTHO05D005085 3.5e-55 219.9 372 37.6
BcaB06g26571 Brassica carinata HOM05D002428 ORTHO05D005085 4.6e-55 219.5 354 40.4
BolC7t41792H Brassica oleracea HOM05D002428 ORTHO05D005085 4.6e-55 219.5 371 39.9
unitig_26.g9776 Utricularia gibba HOM05D002428 ORTHO05D005085 4.6e-55 219.5 354 39.8
BcaC06g35609 Brassica carinata HOM05D002428 ORTHO05D005085 7.9e-55 218.8 371 39.9
C07p12990 Brassica napus HOM05D002428 ORTHO05D005085 7.9e-55 218.8 371 39.9
BcaC01g03347 Brassica carinata HOM05D002428 ORTHO05D005085 1.3e-54 218.0 355 40.6
A01p31110 Brassica napus HOM05D002428 ORTHO05D005085 1.8e-54 217.6 373 38.6
BraA01t03235Z Brassica rapa HOM05D002428 ORTHO05D005085 1.8e-54 217.6 373 38.6
BraA03t13484Z Brassica rapa HOM05D002428 ORTHO05D005085 1.8e-54 217.6 363 40.2
THA.LOC104804814 Tarenaya hassleriana HOM05D002428 ORTHO05D005085 2.3e-54 217.2 376 35.1
BolC3t17603H Brassica oleracea HOM05D002428 ORTHO05D005085 5.1e-54 216.1 363 39.7
A07p08320 Brassica napus HOM05D002428 ORTHO05D005085 6.7e-54 215.7 365 39.7
BraA07t28615Z Brassica rapa HOM05D002428 ORTHO05D005085 6.7e-54 215.7 365 39.7
BolC1t03917H Brassica oleracea HOM05D002428 ORTHO05D005085 3.3e-53 213.4 374 39.8
CARHR100040 Cardamine hirsuta HOM05D002428 ORTHO05D005085 3.3e-53 213.4 380 37.6
C03p53420 Brassica napus HOM05D002428 ORTHO05D005085 4.3e-53 213.0 363 39.7
C01p39650 Brassica napus HOM05D002428 ORTHO05D005085 5.7e-53 212.6 374 39.8
Aa31LG8G10690 Aethionema arabicum HOM05D002428 ORTHO05D005085 2.6e-50 203.8 348 38.5
Psat1g166480 Pisum sativum HOM05D002428 ORTHO05D005085 5.1e-46 189.5 287 34.5
AUR62032922 Chenopodium quinoa HOM05D002428 ORTHO05D005085 2.5e-40 170.6 280 37.9
MELO3C006320.2 Cucumis melo HOM05D002428 ORTHO05D005085 4.6e-39 166.4 290 35.2
Ah.13g078150 Amaranthus hybridus HOM05D002428 ORTHO05D000462 1.4e-30 138.3 156 50.0
Cpa.g.sc1744.1 Carica papaya HOM05D002428 ORTHO05D005085 1.4e-30 138.3 203 39.9
Cpa.g.sc59.124 Carica papaya HOM05D002428 ORTHO05D005085 1.8e-30 137.9 130 60.0
Lj3A543T20 Lonicera japonica HOM05D002428 ORTHO05D005085 1.5e-29 134.8 131 61.1
SMO367G0336 Selaginella moellendorffii HOM05D002428 ORTHO05D005085 9.1e-27 125.6 386 28.8
Ah.01g001410 Amaranthus hybridus HOM05D002428 ORTHO05D005085 1.0e-25 122.1 264 32.2
Mapoly0023s0054 Marchantia polymorpha HOM05D002428 ORTHO05D005085 2.7e-23 114.0 367 30.2
CBR_g18980 Chara braunii HOM05D002428 ORTHO05D005085 6.1e-23 112.8 378 27.8
Ah.01g001400 Amaranthus hybridus HOM05D002428 ORTHO05D005085 1.4e-19 101.7 271 28.8
Pp3c14_7560 Physcomitrium patens HOM05D002428 ORTHO05D005085 1.6e-18 98.2 376 25.0
Pp3c10_8060 Physcomitrium patens HOM05D002428 ORTHO05D005085 4.5e-18 96.7 417 23.5
Gohir.D01G133000 Gossypium hirsutum HOM05D002428 ORTHO05D005085 3.2e-16 90.5 136 38.2
Gorai.011G166500 Gossypium raimondii HOM05D002428 ORTHO05D005085 3.0e-14 84.0 125 37.6
PSO017G6711 Papaver somniferum HOM05D002428 ORTHO05D005085 2.0e-13 81.3 115 39.1
Lalb_Chr15g0088821 Lupinus albus HOM05D002428 ORTHO05D005085 1.6e-10 71.6 105 36.2
Cre17.g708350 Chlamydomonas reinhardtii HOM05D002428 ORTHO05D005085 4.2e-08 63.5 384 21.9
Oeu020092.1 Olea europaea HOM05D002428 ORTHO05D005085 5.5e-08 63.2 95 41.1
Oeu044084.1 Olea europaea HOM05D002428 ORTHO05D005085 9.5e-08 62.4 83 42.2
Oeu003801.3 Olea europaea HOM05D000258 ORTHO05D000153 1.2e-07 62.0 84 45.2
Oeu041684.1 Olea europaea HOM05D002428 ORTHO05D005085 1.6e-07 61.6 94 40.4
Nitab4.5_0000081g0050 Nicotiana tabacum HOM05D002428 ORTHO05D005085 2.1e-07 61.2 116 29.3
Rhsim09G0053800 Rhododendron simsii HOM05D002428 ORTHO05D005085 4.7e-07 60.1 98 33.7
Rhsim09G0054400 Rhododendron simsii HOM05D002428 ORTHO05D005085 4.7e-07 60.1 98 33.7
Nitab4.5_0001063g0080 Nicotiana tabacum HOM05D002389 ORTHO05D005085 8.0e-07 59.3 254 24.0


User provided reference genes

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