Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE11G0332 Ceratophyllum demersum HOM05D001794 ORTHO05D130156 1.8e-87 325.9 163 100.0
CDE05G0064 Ceratophyllum demersum HOM05D001794 ORTHO05D007659 8.2e-56 220.7 303 47.9
Actinidia06021 Actinidia chinensis HOM05D001794 ORTHO05D007659 1.7e-53 213.0 293 47.1
MBI10_g09175_MAGBIO Magnolia biondii HOM05D001794 ORTHO05D007659 6.5e-53 211.1 284 46.8
CiPaw.04G025100 Carya illinoinensis HOM05D001794 ORTHO05D007659 1.5e-52 209.9 303 45.9
Actinidia36088 Actinidia chinensis HOM05D001794 ORTHO05D007659 2.5e-52 209.1 303 45.5
EL10Ac9g22931 Beta vulgaris HOM05D001794 ORTHO05D007659 2.5e-52 209.1 294 46.9
COL.COLO4_28976 Corchorus olitorius HOM05D001794 ORTHO05D007659 4.2e-52 208.4 303 45.5
Haze_14676 Corylus avellana HOM05D001794 ORTHO05D007659 4.2e-52 208.4 303 45.5
Duzib264G1210 Durio zibethinus HOM05D001794 ORTHO05D007659 4.2e-52 208.4 303 45.5
FAN05G4092 Fragaria x ananassa HOM05D001794 ORTHO05D007659 5.5e-52 208.0 303 45.9
Rhsim10G0021600 Rhododendron simsii HOM05D001794 ORTHO05D007659 5.5e-52 208.0 303 45.2
GSVIVG01032470001 Vitis vinifera HOM05D001794 ORTHO05D007659 5.5e-52 208.0 303 45.5
CANSAT64G1634 Cannabis sativa HOM05D001794 ORTHO05D007659 7.2e-52 207.6 303 45.5
Duzib147G1267 Durio zibethinus HOM05D001794 ORTHO05D007659 9.4e-52 207.2 303 45.2
Eucgr.I01794 Eucalyptus grandis HOM05D001794 ORTHO05D007659 9.4e-52 207.2 303 45.2
FAN02G0205 Fragaria x ananassa HOM05D001794 ORTHO05D007659 1.2e-51 206.8 302 45.7
QL02p076387 Quercus lobata HOM05D001794 ORTHO05D007659 1.2e-51 206.8 303 45.5
Lj7C592T2 Lonicera japonica HOM05D001794 ORTHO05D007659 1.6e-51 206.5 303 44.9
vmacro05829 Vaccinium macrocarpon HOM05D001794 ORTHO05D007659 1.6e-51 206.5 303 45.2
FvH4_6g50750 Fragaria vesca HOM05D001794 ORTHO05D007659 2.1e-51 206.1 303 45.5
FAN14G0059 Fragaria x ananassa HOM05D001794 ORTHO05D007659 2.1e-51 206.1 303 45.5
Gorai.001G262200 Gossypium raimondii HOM05D001794 ORTHO05D007659 2.1e-51 206.1 303 45.2
PGR142G3307 Punica granatum HOM05D001794 ORTHO05D007659 2.7e-51 205.7 303 45.2
unitig_62.g23152 Utricularia gibba HOM05D001794 ORTHO05D007659 2.7e-51 205.7 283 47.0
Cfa008568 Carpinus fangiana HOM05D001794 ORTHO05D007659 4.7e-51 204.9 303 45.2
Cpa.g.sc39.79 Carica papaya HOM05D001794 ORTHO05D007659 6.1e-51 204.5 303 44.6
Prupe.3G285300 Prunus persica HOM05D001794 ORTHO05D007659 6.1e-51 204.5 303 44.9
Thecc.04G009900 Theobroma cacao HOM05D001794 ORTHO05D007659 6.1e-51 204.5 303 44.6
MD09G1032700 Malus domestica HOM05D001794 ORTHO05D007659 8.0e-51 204.1 303 44.9
Potri.001G348600 Populus trichocarpa HOM05D001794 ORTHO05D007659 8.0e-51 204.1 303 44.9
Aqoxy7G01736 Aquilegia oxysepala HOM05D001794 ORTHO05D007659 1.0e-50 203.8 303 44.9
CSS0045670 Camellia sinensis var. sinensis HOM05D001794 ORTHO05D007659 1.4e-50 203.4 303 44.6
Gohir.A07G220600 Gossypium hirsutum HOM05D001794 ORTHO05D007659 1.4e-50 203.4 303 44.9
Hma1.2p1_3249F.1_g334420 Hydrangea macrophylla HOM05D001794 ORTHO05D007659 1.4e-50 203.4 303 44.9
Gohir.D07G227300 Gossypium hirsutum HOM05D001794 ORTHO05D007659 2.3e-50 202.6 303 44.6
Peaxi162Scf00504g00091 Petunia axillaris HOM05D001794 ORTHO05D007659 2.3e-50 202.6 303 44.6
Hund02266 Selenicereus undatus HOM05D001794 ORTHO05D007659 3.0e-50 202.2 303 44.2
ECA246G1151 Erigeron canadensis HOM05D001794 ORTHO05D007659 3.9e-50 201.8 303 43.9
Ciclev10014558m.g Citrus clementina HOM05D001794 ORTHO05D007659 5.2e-50 201.4 303 44.6
Cc07_g02190 Coffea canephora HOM05D001794 ORTHO05D007659 5.2e-50 201.4 303 43.9
DCAR_021686 Daucus carota HOM05D001794 ORTHO05D007659 5.2e-50 201.4 303 44.6
Sc16g0003680 Simmondsia chinensis HOM05D001794 ORTHO05D007659 5.2e-50 201.4 303 44.9
TAR629G2894 Trochodendron aralioides HOM05D001794 ORTHO05D007659 5.2e-50 201.4 303 44.6
BcaB08g36949 Brassica carinata HOM05D001794 ORTHO05D007659 6.7e-50 201.1 303 44.2
HPP92_003798 Vanilla planifolia HOM05D001794 ORTHO05D007659 6.7e-50 201.1 303 44.2
Ah.12g062210 Amaranthus hybridus HOM05D001794 ORTHO05D007659 8.8e-50 200.7 303 43.9
CSS0049162 Camellia sinensis var. sinensis HOM05D001794 ORTHO05D007659 8.8e-50 200.7 303 44.2
MD17G1034300 Malus domestica HOM05D001794 ORTHO05D007659 8.8e-50 200.7 303 44.2
Zm00001eb231540 Zea mays HOM05D001794 ORTHO05D007659 8.8e-50 200.7 303 43.9
Atru.chr6.2304 Acer truncatum HOM05D001794 ORTHO05D007659 1.1e-49 200.3 303 44.6
BcaC04g19011 Brassica carinata HOM05D001794 ORTHO05D007659 1.1e-49 200.3 304 44.1
BolC9t59077H Brassica oleracea HOM05D001794 ORTHO05D007659 1.1e-49 200.3 304 44.1
Lj2g0026373 Lotus japonicus HOM05D001794 ORTHO05D007659 1.1e-49 200.3 303 44.2
CSS0005138 Camellia sinensis var. sinensis HOM05D001794 ORTHO05D007659 1.5e-49 199.9 303 44.2
HanXRQChr15g0465291 Helianthus annuus HOM05D001794 ORTHO05D007659 1.5e-49 199.9 303 43.9
Lsat_1_v5_gn_3_70920 Lactuca sativa HOM05D001794 ORTHO05D007659 1.5e-49 199.9 303 43.9
MSTRG.3299 Avicennia marina HOM05D001794 ORTHO05D007659 2.0e-49 199.5 303 43.9
CAN.G1806.2 Capsicum annuum HOM05D001794 ORTHO05D007659 2.0e-49 199.5 303 44.2
AUR62036486 Chenopodium quinoa HOM05D001794 ORTHO05D007659 2.0e-49 199.5 303 44.2
AUR62037090 Chenopodium quinoa HOM05D001794 ORTHO05D007659 2.0e-49 199.5 303 44.6
Thhalv10015655m.g Eutrema salsugineum HOM05D001794 ORTHO05D007659 2.0e-49 199.5 303 43.9
Glyma.05G007600 Glycine max HOM05D001794 ORTHO05D007659 2.0e-49 199.5 303 43.9
SalBow1G4162 Salvia bowleyana HOM05D001794 ORTHO05D007659 2.0e-49 199.5 303 44.2
Ca_04193_v3 Cicer arietinum L. HOM05D001794 ORTHO05D007659 3.3e-49 198.7 276 45.7
Dinv35068 Davidia involucrata HOM05D001794 ORTHO05D007659 3.3e-49 198.7 317 42.9
Manes.17G120500 Manihot esculenta HOM05D001794 ORTHO05D007659 3.3e-49 198.7 303 43.9
Oeu062921.1 Olea europaea HOM05D001794 ORTHO05D007659 3.3e-49 198.7 303 43.9
Sed0001215 Sechium edule HOM05D001794 ORTHO05D007659 3.3e-49 198.7 303 44.2
TAR371G0305 Trochodendron aralioides HOM05D001794 ORTHO05D007659 3.3e-49 198.7 303 43.9
Migut.H00116 Erythranthe guttata HOM05D001794 ORTHO05D007659 4.4e-49 198.4 303 43.9
Lalb_Chr06g0176021 Lupinus albus HOM05D001794 ORTHO05D007659 4.4e-49 198.4 303 43.6
Nn4g22777 Nelumbo nucifera HOM05D001794 ORTHO05D007659 4.4e-49 198.4 303 43.9
Sabra16G0228200 Salix brachista HOM05D001794 ORTHO05D007659 5.7e-49 198.0 303 44.2
AL6G25560 Arabidopsis lyrata HOM05D001794 ORTHO05D007659 7.4e-49 197.6 303 43.9
arahy.Tifrunner.gnm1.ann1.L6XTUR Arachis hypogaea HOM05D001794 ORTHO05D007659 7.4e-49 197.6 303 43.2
C09p62390 Brassica napus HOM05D001794 ORTHO05D007659 7.4e-49 197.6 303 43.9
ClCG09G018960 Citrullus lanatus HOM05D001794 ORTHO05D007659 7.4e-49 197.6 303 44.2
Os02g0134400 Oryza sativa ssp. japonica HOM05D001794 ORTHO05D007659 7.4e-49 197.6 303 43.9
RcHm_v2.0_Chr2g0171691 Rosa chinensis HOM05D001794 ORTHO05D007659 7.4e-49 197.6 303 44.2
A10p23920 Brassica napus HOM05D001794 ORTHO05D007659 9.7e-49 197.2 303 43.9
BraA10t44456Z Brassica rapa HOM05D001794 ORTHO05D007659 9.7e-49 197.2 303 43.9
Carub.0006s1293 Capsella rubella HOM05D001794 ORTHO05D007659 9.7e-49 197.2 303 43.9
MELO3C021545.2 Cucumis melo HOM05D001794 ORTHO05D007659 9.7e-49 197.2 303 44.2
CsaV3_5G027390 Cucumis sativus L. HOM05D001794 ORTHO05D007659 9.7e-49 197.2 303 44.2
Sp6g29280 Schrenkiella parvula HOM05D001794 ORTHO05D007659 1.3e-48 196.8 303 43.2
CARHR198550 Cardamine hirsuta HOM05D001794 ORTHO05D007659 1.7e-48 196.4 303 43.9
arahy.Tifrunner.gnm1.ann1.V2BCF1 Arachis hypogaea HOM05D001794 ORTHO05D007659 2.2e-48 196.1 303 43.2
PGSC0003DMG400012848 Solanum tuberosum HOM05D001794 ORTHO05D007659 2.2e-48 196.1 303 43.6
TWI56G0328 Tripterygium wilfordii HOM05D001794 ORTHO05D007659 2.2e-48 196.1 303 44.2
VMungo0464G0038 Vigna mungo HOM05D001794 ORTHO05D007659 2.2e-48 196.1 303 43.2
Cfa007423 Carpinus fangiana HOM05D001794 ORTHO05D007659 2.8e-48 195.7 303 42.9
Dinv33489 Davidia involucrata HOM05D001794 ORTHO05D007659 2.8e-48 195.7 303 43.6
PSO063G6846 Papaver somniferum HOM05D001794 ORTHO05D007659 4.8e-48 194.9 303 43.6
Phvul.004G013800 Phaseolus vulgaris HOM05D001794 ORTHO05D007659 4.8e-48 194.9 303 43.2
TWI12G0896 Tripterygium wilfordii HOM05D001794 ORTHO05D007659 4.8e-48 194.9 303 43.9
PSO832G0053 Papaver somniferum HOM05D001794 ORTHO05D007659 6.3e-48 194.5 303 43.2
Solyc12g014530.3 Solanum lycopersicum HOM05D001794 ORTHO05D007659 6.3e-48 194.5 303 43.2
TPR.G2266 Trifolium pratense HOM05D001794 ORTHO05D007659 8.2e-48 194.1 303 42.9
Medtr6g007070 Medicago truncatula HOM05D001794 ORTHO05D007659 1.1e-47 193.7 303 42.9
Nitab4.5_0003989g0020 Nicotiana tabacum HOM05D001794 ORTHO05D007659 1.4e-47 193.4 303 43.9
Sopen12g007400 Solanum pennellii HOM05D001794 ORTHO05D007659 1.4e-47 193.4 303 43.2
Aa31LG11G14700 Aethionema arabicum HOM05D001794 ORTHO05D007659 2.4e-47 192.6 303 43.6
AT5G14760 Arabidopsis thaliana HOM05D001794 ORTHO05D007659 2.4e-47 192.6 303 43.6
Psat1g057200 Pisum sativum HOM05D001794 ORTHO05D007659 7.0e-47 191.0 303 42.6
THA.LOC104821074 Tarenaya hassleriana HOM05D001794 ORTHO05D007659 7.0e-47 191.0 303 42.9
Nitab4.5_0002338g0020 Nicotiana tabacum HOM05D001794 ORTHO05D007659 2.0e-46 189.5 303 43.9
ATR0730G204 Amborella trichopoda HOM05D001794 ORTHO05D007659 5.9e-46 188.0 303 42.2
Nitab4.5_0005830g0010 Nicotiana tabacum HOM05D001794 ORTHO05D007659 5.9e-46 188.0 303 43.6
Hma1.2p1_0993F.1_g245500 Hydrangea macrophylla HOM05D001794 ORTHO05D007659 1.3e-45 186.8 275 46.2
AUR62038367 Chenopodium quinoa HOM05D001794 ORTHO05D007659 2.2e-45 186.0 271 46.1
Mapoly0074s0055 Marchantia polymorpha HOM05D001794 ORTHO05D007659 1.2e-43 180.3 302 41.4
SEGI_30695 Sequoiadendron giganteum HOM05D001794 ORTHO05D007659 1.2e-43 180.3 318 40.9
Pp3c9_15130 Physcomitrium patens HOM05D001794 ORTHO05D007659 3.6e-43 178.7 301 41.2
SHI03735 Sapria himalayana HOM05D001794 ORTHO05D007659 8.0e-43 177.6 303 40.9
SMO347G0446 Selaginella moellendorffii HOM05D001794 ORTHO05D007659 2.6e-41 172.6 305 39.7
AagrBONN_evm.TU.Sc2ySwM_228.1868 Anthoceros agrestis HOM05D001794 ORTHO05D007659 1.7e-40 169.9 302 39.7
FAN09G1732 Fragaria x ananassa HOM05D001794 ORTHO05D007659 1.8e-39 166.4 268 44.4
CBR_g41133 Chara braunii HOM05D001794 ORTHO05D007659 2.4e-39 166.0 302 39.4
Oeu043059.1 Olea europaea HOM05D001794 ORTHO05D007659 1.6e-38 163.3 140 65.0
Nitab4.5_0002338g0040 Nicotiana tabacum HOM05D001794 ORTHO05D007659 3.5e-38 162.2 167 56.3
Solyc01g056580.4 Solanum lycopersicum HOM05D001794 ORTHO05D007659 1.1e-36 157.1 166 55.4
SGA_v2.0_scaffold135G34872 Striga asiatica HOM05D001794 ORTHO05D007659 3.6e-35 152.1 283 38.9
Haze_14674 Corylus avellana HOM05D001794 ORTHO05D007659 5.7e-33 144.8 270 39.6
CSS0040037 Camellia sinensis var. sinensis HOM05D001794 ORTHO05D007659 3.1e-31 139.0 155 54.2
PRCOL_00002767 Prasinoderma coloniale HOM05D001794 ORTHO05D007659 9.8e-25 117.5 314 32.2
Cre12.g528450 Chlamydomonas reinhardtii HOM05D001794 ORTHO05D007659 8.3e-24 114.4 302 32.1
MCO06G058 Micromonas commoda HOM05D001794 ORTHO05D007659 3.5e-22 109.0 311 30.9
Sc16g0003630 Simmondsia chinensis HOM05D001794 ORTHO05D007659 9.2e-15 84.3 127 46.5
Oeu043056.1 Olea europaea HOM05D007843 ORTHO05D003639 6.0e-14 81.6 44 86.4
Sc16g0003620 Simmondsia chinensis HOM05D001794 ORTHO05D023821 2.5e-12 76.3 44 81.8
arahy.Tifrunner.gnm1.ann1.SAS0DZ Arachis hypogaea HOM05D000150 ORTHO05D000108 9.5e-12 74.3 44 77.3
arahy.Tifrunner.gnm1.ann1.YVWU75 Arachis hypogaea HOM05D001794 ORTHO05D086187 1.6e-11 73.6 44 77.3
EL10As13g24053 Beta vulgaris HOM05D001794 ORTHO05D023821 3.7e-08 62.4 32 87.5
EL10Ac1g01826 Beta vulgaris HOM05D001794 ORTHO05D023821 8.3e-08 61.2 32 84.4
Solyc06g008420.2 Solanum lycopersicum HOM05D001794 ORTHO05D000492 1.2e-06 57.4 70 45.7


User provided reference genes

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