Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE11G0319 Ceratophyllum demersum HOM05D005297 ORTHO05D006545 1.2e-59 233.0 118 100.0
Lsat_1_v5_gn_8_117180 Lactuca sativa HOM05D005297 ORTHO05D006545 2.0e-51 205.7 117 84.6
MBI17_g16878_MAGBIO Magnolia biondii HOM05D005297 ORTHO05D006545 7.5e-51 203.8 116 84.5
ECA236G0310 Erigeron canadensis HOM05D005297 ORTHO05D006545 1.7e-50 202.6 117 82.9
Nn2g14072 Nelumbo nucifera HOM05D005297 ORTHO05D006545 2.2e-50 202.2 117 82.1
PGR119G1280 Punica granatum HOM05D005297 ORTHO05D006545 2.2e-50 202.2 117 83.8
QL02p014091 Quercus lobata HOM05D005297 ORTHO05D006545 2.9e-50 201.8 117 82.1
Hund18738 Selenicereus undatus HOM05D005297 ORTHO05D006545 3.7e-50 201.4 115 83.5
CANSAT64G2769 Cannabis sativa HOM05D005297 ORTHO05D006545 4.9e-50 201.1 117 82.9
Solyc11g067150.2 Solanum lycopersicum HOM05D005297 ORTHO05D006545 4.9e-50 201.1 117 80.3
Sopen11g026830 Solanum pennellii HOM05D005297 ORTHO05D006545 4.9e-50 201.1 117 80.3
TAR623G0730 Trochodendron aralioides HOM05D005297 ORTHO05D006545 4.9e-50 201.1 117 82.9
Gorai.001G120900 Gossypium raimondii HOM05D005297 ORTHO05D006545 6.4e-50 200.7 117 81.2
HanXRQChr13g0408991 Helianthus annuus HOM05D005297 ORTHO05D006545 6.4e-50 200.7 117 83.8
PGSC0003DMG400007409 Solanum tuberosum HOM05D005297 ORTHO05D006545 6.4e-50 200.7 117 80.3
Nitab4.5_0003532g0010 Nicotiana tabacum HOM05D005297 ORTHO05D006545 8.3e-50 200.3 117 81.2
Gohir.D07G112500 Gossypium hirsutum HOM05D005297 ORTHO05D006545 1.4e-49 199.5 117 80.3
Gohir.A07G108700 Gossypium hirsutum HOM05D005297 ORTHO05D006545 1.9e-49 199.1 117 80.3
Gohir.A07G108780 Gossypium hirsutum HOM05D005297 ORTHO05D006545 1.9e-49 199.1 117 80.3
PSO384G0067 Papaver somniferum HOM05D005297 ORTHO05D006545 1.9e-49 199.1 117 81.2
Manes.11G159700 Manihot esculenta HOM05D005297 ORTHO05D006545 3.2e-49 198.4 117 80.3
HPP92_006421 Vanilla planifolia HOM05D005297 ORTHO05D006545 7.0e-49 197.2 117 80.3
Duzib150G0109 Durio zibethinus HOM05D005297 ORTHO05D006545 9.2e-49 196.8 117 80.3
PSO170G0247 Papaver somniferum HOM05D005297 ORTHO05D006545 9.2e-49 196.8 117 79.5
PSO339G0592 Papaver somniferum HOM05D005297 ORTHO05D006545 9.2e-49 196.8 117 80.3
CAN.G644.6 Capsicum annuum HOM05D005297 ORTHO05D006545 1.2e-48 196.4 117 79.5
CiPaw.13G138500 Carya illinoinensis HOM05D005297 ORTHO05D006545 1.2e-48 196.4 116 80.2
AUR62009792 Chenopodium quinoa HOM05D005297 ORTHO05D006545 1.2e-48 196.4 117 80.3
Manes.14G159600 Manihot esculenta HOM05D005297 ORTHO05D006545 1.2e-48 196.4 117 78.6
PSO425G0036 Papaver somniferum HOM05D005297 ORTHO05D006545 1.2e-48 196.4 117 80.3
Rhsim05G0032500 Rhododendron simsii HOM05D005297 ORTHO05D006545 1.2e-48 196.4 117 78.6
Thecc.09G287800 Theobroma cacao HOM05D005297 ORTHO05D006545 1.6e-48 196.1 117 79.5
Prupe.6G124400 Prunus persica HOM05D005297 ORTHO05D006545 2.0e-48 195.7 117 78.6
TAR369G0691 Trochodendron aralioides HOM05D005297 ORTHO05D006545 2.0e-48 195.7 117 80.3
VMungo1080G0855 Vigna mungo HOM05D005392 ORTHO05D006709 2.0e-48 195.7 117 78.6
Phvul.005G125900 Phaseolus vulgaris HOM05D005297 ORTHO05D006545 2.7e-48 195.3 117 76.9
THA.LOC104799541 Tarenaya hassleriana HOM05D005297 ORTHO05D006545 2.7e-48 195.3 117 78.6
Haze_23424 Corylus avellana HOM05D005297 ORTHO05D006545 3.5e-48 194.9 117 77.8
PSO801G0702 Papaver somniferum HOM05D005297 ORTHO05D006545 3.5e-48 194.9 117 80.3
Aa31LG6G1540 Aethionema arabicum HOM05D005297 ORTHO05D006545 4.6e-48 194.5 117 78.6
Ciclev10029400m.g Citrus clementina HOM05D005297 ORTHO05D006545 4.6e-48 194.5 116 79.3
Dinv29444 Davidia involucrata HOM05D005297 ORTHO05D006545 4.6e-48 194.5 117 78.6
Os04g0410300 Oryza sativa ssp. japonica HOM05D005297 ORTHO05D006545 4.6e-48 194.5 117 78.6
vmacro03296 Vaccinium macrocarpon HOM05D005297 ORTHO05D006545 4.6e-48 194.5 117 78.6
RcHm_v2.0_Chr5g0054901 Rosa chinensis HOM05D005297 ORTHO05D006545 6.0e-48 194.1 117 76.9
Carub.0006s3210 Capsella rubella HOM05D005297 ORTHO05D006545 1.0e-47 193.4 117 78.6
MELO3C003122.2 Cucumis melo HOM05D005297 ORTHO05D006545 1.0e-47 193.4 117 78.6
Zm00001eb084080 Zea mays HOM05D005297 ORTHO05D006545 1.0e-47 193.4 117 77.8
CsaV3_4G024870 Cucumis sativus L. HOM05D005297 ORTHO05D006545 1.3e-47 193.0 117 79.5
Glyma.12G183000 Glycine max HOM05D005297 ORTHO05D006545 1.3e-47 193.0 117 76.1
Glyma.13G318100 Glycine max HOM05D005297 ORTHO05D006545 1.3e-47 193.0 117 76.1
Potri.009G146100 Populus trichocarpa HOM05D005297 ORTHO05D006545 1.3e-47 193.0 117 77.8
Sed0022012 Sechium edule HOM05D005297 ORTHO05D006545 1.3e-47 193.0 117 79.5
Atru.chr3.3335 Acer truncatum HOM05D005297 ORTHO05D006545 1.7e-47 192.6 117 76.9
Aqoxy4G02831 Aquilegia oxysepala HOM05D005297 ORTHO05D006545 1.7e-47 192.6 117 79.5
EL10Ac7g15793 Beta vulgaris HOM05D005297 ORTHO05D006545 1.7e-47 192.6 117 78.6
Lsat_1_v5_gn_8_90380 Lactuca sativa HOM05D005297 ORTHO05D006545 1.7e-47 192.6 109 85.3
RcHm_v2.0_Chr5g0054661 Rosa chinensis HOM05D005297 ORTHO05D006545 1.7e-47 192.6 117 76.1
BcaC04g21280 Brassica carinata HOM05D005297 ORTHO05D006545 2.3e-47 192.2 117 77.8
MD11G1160800 Malus domestica HOM05D005297 ORTHO05D006545 2.3e-47 192.2 117 76.9
CSS0010276 Camellia sinensis var. sinensis HOM05D005297 ORTHO05D006545 3.0e-47 191.8 117 77.8
CSS0048581 Camellia sinensis var. sinensis HOM05D005297 ORTHO05D006545 3.0e-47 191.8 117 77.8
Lj2g0006626 Lotus japonicus HOM05D005297 ORTHO05D006545 3.0e-47 191.8 117 75.2
Sabra09G0113000 Salix brachista HOM05D005297 ORTHO05D006545 3.0e-47 191.8 117 76.1
Sabra09G0115400 Salix brachista HOM05D005297 ORTHO05D006545 3.0e-47 191.8 117 76.1
Rhsim13G0108000 Rhododendron simsii HOM05D005297 ORTHO05D006545 3.9e-47 191.4 117 76.9
Ca_09074_v3 Cicer arietinum L. HOM05D005297 ORTHO05D006545 5.0e-47 191.0 117 75.2
Sc21g0007210 Simmondsia chinensis HOM05D005297 ORTHO05D006545 5.0e-47 191.0 117 77.8
unitig_736.g22397 Utricularia gibba HOM05D005297 ORTHO05D006545 5.0e-47 191.0 117 77.8
AL6G47810 Arabidopsis lyrata HOM05D005297 ORTHO05D006545 6.6e-47 190.7 117 77.8
BcaB01g01797 Brassica carinata HOM05D005297 ORTHO05D006545 6.6e-47 190.7 117 76.9
Medtr4g088775 Medicago truncatula HOM05D005297 ORTHO05D006545 6.6e-47 190.7 117 75.2
Sp6g04610 Schrenkiella parvula HOM05D005297 ORTHO05D006545 6.6e-47 190.7 117 76.9
GSVIVG01036187001 Vitis vinifera HOM05D005297 ORTHO05D006545 6.6e-47 190.7 109 82.6
Eucgr.J00466 Eucalyptus grandis HOM05D005297 ORTHO05D006545 8.6e-47 190.3 117 77.8
Lalb_Chr24g0395231 Lupinus albus HOM05D005297 ORTHO05D006545 8.6e-47 190.3 117 73.5
CARHR253330 Cardamine hirsuta HOM05D005297 ORTHO05D006545 1.1e-46 189.9 117 76.1
AT4G04190 Arabidopsis thaliana HOM05D005297 ORTHO05D006545 1.5e-46 189.5 117 76.9
Psat2g130440 Pisum sativum HOM05D005297 ORTHO05D006545 1.5e-46 189.5 117 74.4
Thhalv10029010m.g Eutrema salsugineum HOM05D005297 ORTHO05D006545 2.5e-46 188.7 117 76.1
Medtr0227s0030 Medicago truncatula HOM05D005297 ORTHO05D006545 2.5e-46 188.7 117 74.4
A09p26430 Brassica napus HOM05D005297 ORTHO05D006545 3.3e-46 188.3 115 77.4
C09p33610 Brassica napus HOM05D002056 ORTHO05D002289 3.3e-46 188.3 115 77.4
FAN16G3468 Fragaria x ananassa HOM05D005297 ORTHO05D006545 3.3e-46 188.3 117 75.2
FAN21G1663 Fragaria x ananassa HOM05D005297 ORTHO05D006545 3.3e-46 188.3 117 75.2
Rhsim13G0108200 Rhododendron simsii HOM05D005297 ORTHO05D006545 3.3e-46 188.3 114 77.2
Sc15g0007560 Simmondsia chinensis HOM05D005297 ORTHO05D006545 3.3e-46 188.3 117 76.9
Peaxi162Scf00544g00918 Petunia axillaris HOM05D005297 ORTHO05D006545 4.3e-46 188.0 109 80.7
FvH4_3g29610 Fragaria vesca HOM05D005297 ORTHO05D006545 5.6e-46 187.6 117 75.2
FAN11G1678 Fragaria x ananassa HOM05D005297 ORTHO05D006545 5.6e-46 187.6 117 75.2
Hma1.2p1_0305F.1_g119460 Hydrangea macrophylla HOM05D005297 ORTHO05D006545 7.3e-46 187.2 109 80.7
Nitab4.5_0021448g0010 Nicotiana tabacum HOM05D005297 ORTHO05D006545 9.5e-46 186.8 109 80.7
PSO782G5408 Papaver somniferum HOM05D005297 ORTHO05D006545 9.5e-46 186.8 117 76.9
MSTRG.18743 Avicennia marina HOM05D005297 ORTHO05D006545 1.6e-45 186.0 117 75.2
Migut.N00940 Erythranthe guttata HOM05D005297 ORTHO05D006545 1.6e-45 186.0 117 76.1
COL.COLO4_19936 Corchorus olitorius HOM05D005297 ORTHO05D006545 2.1e-45 185.7 109 80.7
ATR0820G241 Amborella trichopoda HOM05D005297 ORTHO05D006545 2.8e-45 185.3 109 82.6
CAN.G1177.8 Capsicum annuum HOM05D005297 ORTHO05D006545 2.8e-45 185.3 109 78.9
Sp7g17550 Schrenkiella parvula HOM05D005297 ORTHO05D006545 2.8e-45 185.3 117 74.4
TWI79G0927 Tripterygium wilfordii HOM05D005297 ORTHO05D006545 4.7e-45 184.5 117 76.1
TWI79G0105 Tripterygium wilfordii HOM05D005297 ORTHO05D006545 6.2e-45 184.1 117 76.1
BolC9t56195H Brassica oleracea HOM05D002056 ORTHO05D002289 1.1e-44 183.3 109 78.9
BraA09t38217Z Brassica rapa HOM05D005297 ORTHO05D006545 1.1e-44 183.3 109 78.9
Cpa.g.sc32.130 Carica papaya HOM05D005297 ORTHO05D006545 1.1e-44 183.3 109 80.7
Lj2A987T34 Lonicera japonica HOM05D005297 ORTHO05D006545 1.1e-44 183.3 109 78.9
PSO339G2689 Papaver somniferum HOM05D005297 ORTHO05D006545 1.4e-44 183.0 117 76.1
SalBow6G5239 Salvia bowleyana HOM05D005297 ORTHO05D006545 1.8e-44 182.6 115 75.7
Cc01_g09520 Coffea canephora HOM05D005297 ORTHO05D006545 2.3e-44 182.2 109 78.9
Duzib168G0206 Durio zibethinus HOM05D005297 ORTHO05D006545 2.3e-44 182.2 118 75.4
SGA_v2.0_scaffold147G36360 Striga asiatica HOM05D005297 ORTHO05D006545 5.2e-44 181.0 115 74.8
arahy.Tifrunner.gnm1.ann1.CT6H1M Arachis hypogaea HOM05D005297 ORTHO05D006545 1.2e-43 179.9 117 69.2
Nitab4.5_0024933g0010 Nicotiana tabacum HOM05D005297 ORTHO05D006545 4.4e-43 177.9 109 78.0
arahy.Tifrunner.gnm1.ann1.K2P72U Arachis hypogaea HOM05D005780 ORTHO05D006545 7.5e-43 177.2 110 72.7
arahy.Tifrunner.gnm1.ann1.S3X3J8 Arachis hypogaea HOM05D005297 ORTHO05D006545 2.9e-42 175.3 109 72.5
Os01g0191000 Oryza sativa ssp. japonica HOM05D005297 ORTHO05D006545 3.7e-42 174.9 115 71.3
Thhalv10005498m.g Eutrema salsugineum HOM05D005297 ORTHO05D006545 6.4e-42 174.1 108 74.1
SEGI_17822 Sequoiadendron giganteum HOM05D005297 ORTHO05D006545 1.9e-41 172.6 115 72.2
arahy.Tifrunner.gnm1.ann1.Q11QUE Arachis hypogaea HOM05D005297 ORTHO05D006545 3.2e-41 171.8 129 65.1
Medtr4g073910 Medicago truncatula HOM05D005297 ORTHO05D006545 3.0e-39 165.2 114 70.2
SHI11151 Sapria himalayana HOM05D005297 ORTHO05D000023 1.2e-37 159.8 113 69.0
CSS0004713 Camellia sinensis var. sinensis HOM05D005297 ORTHO05D006545 1.6e-37 159.5 133 62.4
AUR62039239 Chenopodium quinoa HOM05D005297 ORTHO05D006545 2.3e-36 155.6 114 69.3
Gorai.006G055300 Gossypium raimondii HOM05D005297 ORTHO05D006545 8.4e-34 147.1 81 82.7
Gorai.003G076100 Gossypium raimondii HOM05D005297 ORTHO05D006545 2.4e-33 145.6 115 63.5
Pp3c27_2700 Physcomitrium patens HOM05D005297 ORTHO05D006545 2.7e-32 142.1 108 60.2
Gorai.003G055900 Gossypium raimondii HOM05D005297 ORTHO05D006545 7.8e-32 140.6 116 61.2
Mapoly0068s0054 Marchantia polymorpha HOM05D005297 ORTHO05D006545 1.1e-30 136.7 117 53.0
Gorai.005G178100 Gossypium raimondii HOM05D005297 ORTHO05D006545 1.6e-29 132.9 81 74.1
Gohir.D09G053026 Gossypium hirsutum HOM05D005297 ORTHO05D006545 3.6e-29 131.7 81 76.5
Rhsim13G0107700 Rhododendron simsii HOM05D005297 ORTHO05D006545 2.4e-28 129.0 117 57.3
Gohir.D06G133032 Gossypium hirsutum HOM05D005297 ORTHO05D006545 2.0e-27 125.9 68 82.4
MD03G1139300 Malus domestica HOM05D005297 ORTHO05D006545 5.8e-27 124.4 77 74.0
arahy.Tifrunner.gnm1.ann1.LDL4WN Arachis hypogaea HOM05D005297 ORTHO05D006545 6.4e-26 120.9 89 64.0
CBR_g82609 Chara braunii HOM05D005297 ORTHO05D006545 1.4e-25 119.8 108 49.1
Actinidia24196 Actinidia chinensis HOM05D005392 ORTHO05D006709 9.3e-25 117.1 104 59.6
PSO782G3247 Papaver somniferum HOM05D005297 ORTHO05D006545 5.1e-23 111.3 68 77.9
RcHm_v2.0_Chr5g0054771 Rosa chinensis HOM05D005297 ORTHO05D006545 6.6e-23 110.9 117 56.4
QL02p014117 Quercus lobata HOM05D005297 ORTHO05D006545 1.1e-22 110.2 64 81.2
TPR.G2691 Trifolium pratense HOM05D005297 ORTHO05D006545 3.1e-20 102.1 71 64.8
Ca_05140_v3 Cicer arietinum L. HOM05D005297 ORTHO05D012218 5.3e-20 101.3 72 62.5
Gohir.D02G158550 Gossypium hirsutum HOM05D005297 ORTHO05D006545 6.9e-20 100.9 81 61.7
DCAR_001100 Daucus carota HOM05D005297 ORTHO05D006545 1.3e-18 96.7 67 65.7
C02p40370 Brassica napus HOM05D000848 ORTHO05D000007 8.4e-18 94.0 66 62.1
TPR.G32973 Trifolium pratense HOM05D005297 ORTHO05D006545 2.7e-16 89.0 52 80.8
BolC2t10071H Brassica oleracea HOM05D005297 ORTHO05D000007 5.1e-15 84.7 58 65.5
CSS0043339 Camellia sinensis var. sinensis HOM05D005297 ORTHO05D006545 1.5e-14 83.2 109 45.0
Psat2g121320 Pisum sativum HOM05D005297 ORTHO05D006545 7.4e-14 80.9 58 56.9
Oeu050204.1 Olea europaea HOM05D005297 ORTHO05D006545 6.0e-08 61.2 34 85.3


User provided reference genes

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