Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE11G0257 Ceratophyllum demersum HOM05D004961 ORTHO05D006258 5.7e-275 950.3 474 100.0
CDE02G2832 Ceratophyllum demersum HOM05D004961 ORTHO05D006258 8.1e-221 770.4 517 79.1
TAR629G2710 Trochodendron aralioides HOM05D004961 ORTHO05D006258 5.7e-182 641.3 516 66.1
Nn4g26417 Nelumbo nucifera HOM05D004961 ORTHO05D006258 1.2e-176 623.6 443 71.3
MBI12_g27776_MAGBIO Magnolia biondii HOM05D004961 ORTHO05D006258 6.1e-176 621.3 515 63.7
Aqoxy7G00605 Aquilegia oxysepala HOM05D004961 ORTHO05D006258 9.7e-174 614.0 457 67.6
Duzib133G1444 Durio zibethinus HOM05D004961 ORTHO05D006258 4.8e-173 611.7 513 63.4
Thecc.01G375500 Theobroma cacao HOM05D004961 ORTHO05D006258 6.3e-173 611.3 521 63.0
TAR375G0417 Trochodendron aralioides HOM05D004961 ORTHO05D006258 8.2e-173 610.9 443 69.1
Cfa001712 Carpinus fangiana HOM05D004961 ORTHO05D006258 3.1e-172 609.0 525 61.7
Haze_16810 Corylus avellana HOM05D004961 ORTHO05D006258 6.9e-172 607.8 526 61.8
CANSAT56G2246 Cannabis sativa HOM05D004961 ORTHO05D006258 2.0e-171 606.3 519 62.0
Manes.05G044700 Manihot esculenta HOM05D004961 ORTHO05D006258 2.0e-171 606.3 500 63.4
vmacro13395 Vaccinium macrocarpon HOM05D004961 ORTHO05D006258 7.7e-171 604.4 517 62.3
CSS0024555 Camellia sinensis var. sinensis HOM05D004961 ORTHO05D006258 3.8e-170 602.1 452 67.3
Dinv43717 Davidia involucrata HOM05D004961 ORTHO05D006258 5.0e-170 601.7 521 62.0
Gohir.A11G081100 Gossypium hirsutum HOM05D004961 ORTHO05D006258 5.0e-170 601.7 508 63.4
ATR0810G227 Amborella trichopoda HOM05D004961 ORTHO05D006258 6.5e-170 601.3 521 61.6
RcHm_v2.0_Chr1g0350691 Rosa chinensis HOM05D004961 ORTHO05D006258 6.5e-170 601.3 444 67.6
Gorai.007G091500 Gossypium raimondii HOM05D004961 ORTHO05D006258 8.5e-170 600.9 508 63.2
MELO3C006184.2 Cucumis melo HOM05D004961 ORTHO05D006258 1.4e-169 600.1 511 61.8
Sed0025415 Sechium edule HOM05D004961 ORTHO05D006258 2.5e-169 599.4 508 60.6
Actinidia12261 Actinidia chinensis HOM05D004961 ORTHO05D006258 3.2e-169 599.0 518 61.4
CsaV3_3G009640 Cucumis sativus L. HOM05D004961 ORTHO05D006258 3.2e-169 599.0 511 61.6
COL.COLO4_12554 Corchorus olitorius HOM05D004961 ORTHO05D006258 5.5e-169 598.2 458 66.8
CiPaw.01G261500 Carya illinoinensis HOM05D004961 ORTHO05D006258 9.4e-169 597.4 542 59.2
FvH4_7g11970 Fragaria vesca HOM05D004961 ORTHO05D006258 9.4e-169 597.4 498 62.0
FAN06G1099 Fragaria x ananassa HOM05D004961 ORTHO05D006258 9.4e-169 597.4 498 62.0
FAN10G1405 Fragaria x ananassa HOM05D004961 ORTHO05D006258 9.4e-169 597.4 498 62.0
Hma1.2p1_0033F.1_g021010 Hydrangea macrophylla HOM05D004961 ORTHO05D006258 9.4e-169 597.4 508 63.0
Hma1.2p1_2294F.1_g319110 Hydrangea macrophylla HOM05D004961 ORTHO05D006258 9.4e-169 597.4 508 63.0
Sed0003746 Sechium edule HOM05D004961 ORTHO05D006258 9.4e-169 597.4 511 61.8
MD02G1203100 Malus domestica HOM05D004961 ORTHO05D006258 1.2e-168 597.0 453 66.7
Sabra14G0049800 Salix brachista HOM05D004961 ORTHO05D006258 1.6e-168 596.7 510 62.5
Gohir.D11G085600 Gossypium hirsutum HOM05D004961 ORTHO05D006258 2.1e-168 596.3 508 62.8
Nn4g26286 Nelumbo nucifera HOM05D004961 ORTHO05D006258 2.1e-168 596.3 426 71.1
TWI14G0737 Tripterygium wilfordii HOM05D004961 ORTHO05D006258 2.7e-168 595.9 526 61.0
FAN06G1287 Fragaria x ananassa HOM05D004961 ORTHO05D006258 7.9e-168 594.3 498 61.8
FAN03G2819 Fragaria x ananassa HOM05D004961 ORTHO05D006258 1.0e-167 594.0 498 61.8
Gohir.A08G031300 Gossypium hirsutum HOM05D004961 ORTHO05D006258 1.4e-167 593.6 476 65.8
Gohir.D08G042400 Gossypium hirsutum HOM05D004961 ORTHO05D006258 1.8e-167 593.2 476 66.0
Gorai.004G041000 Gossypium raimondii HOM05D004961 ORTHO05D006258 1.8e-167 593.2 476 66.0
FAN10G1351 Fragaria x ananassa HOM05D004961 ORTHO05D006258 3.9e-167 592.0 498 61.6
Ciclev10019247m.g Citrus clementina HOM05D004961 ORTHO05D006258 6.7e-167 591.3 503 63.0
FAN01G0106 Fragaria x ananassa HOM05D004961 ORTHO05D006258 1.5e-166 590.1 498 61.0
MD07G1123000 Malus domestica HOM05D004961 ORTHO05D006258 1.5e-166 590.1 500 61.6
PGR031G0429 Punica granatum HOM05D004961 ORTHO05D006258 2.6e-166 589.3 453 66.0
Prupe.2G146400 Prunus persica HOM05D004961 ORTHO05D006258 3.3e-166 589.0 454 65.9
QL08p052244 Quercus lobata HOM05D004961 ORTHO05D006258 3.3e-166 589.0 520 60.8
TWI59G0003 Tripterygium wilfordii HOM05D004961 ORTHO05D006258 4.4e-166 588.6 516 60.1
Potri.014G070200 Populus trichocarpa HOM05D004961 ORTHO05D006258 1.7e-165 586.6 509 61.9
CiPaw.02G167000 Carya illinoinensis HOM05D004961 ORTHO05D006258 2.8e-165 585.9 524 60.1
PSO478G4809 Papaver somniferum HOM05D004961 ORTHO05D006258 6.3e-165 584.7 445 65.4
Lalb_Chr13g0291711 Lupinus albus HOM05D004961 ORTHO05D006258 1.4e-164 583.6 498 61.2
Atru.chr5.317 Acer truncatum HOM05D004961 ORTHO05D006258 1.8e-164 583.2 452 67.0
Ca_23848_v3 Cicer arietinum L. HOM05D004961 ORTHO05D006258 1.8e-164 583.2 484 62.0
SalBow5G3969 Salvia bowleyana HOM05D004961 ORTHO05D006258 3.1e-164 582.4 507 62.1
SalBow5G5559 Salvia bowleyana HOM05D004961 ORTHO05D006258 3.1e-164 582.4 507 62.1
Rhsim07G0027200 Rhododendron simsii HOM05D004961 ORTHO05D006258 4.1e-164 582.0 506 60.3
Sp5g02400 Schrenkiella parvula HOM05D004961 ORTHO05D006258 1.0e-162 577.4 493 61.5
TPR.G21740 Trifolium pratense HOM05D004961 ORTHO05D006258 1.0e-162 577.4 453 64.2
CSS0035955 Camellia sinensis var. sinensis HOM05D004961 ORTHO05D006258 2.9e-162 575.9 529 58.4
Thhalv10005830m.g Eutrema salsugineum HOM05D004961 ORTHO05D006258 1.9e-161 573.2 512 60.9
Medtr8g036115 Medicago truncatula HOM05D004961 ORTHO05D006258 9.4e-161 570.9 471 61.6
Lj3g0023798 Lotus japonicus HOM05D004961 ORTHO05D006258 1.2e-160 570.5 448 65.4
AL5G43170 Arabidopsis lyrata HOM05D004961 ORTHO05D006258 1.0e-159 567.4 494 61.5
PSO782G4206 Papaver somniferum HOM05D004961 ORTHO05D006258 1.8e-159 566.6 445 63.8
EL10Ac1g00903 Beta vulgaris HOM05D004961 ORTHO05D006258 4.0e-159 565.5 472 62.3
Lsat_1_v5_gn_7_7241 Lactuca sativa HOM05D004961 ORTHO05D006258 4.0e-159 565.5 512 60.9
Lj9P570T30 Lonicera japonica HOM05D004961 ORTHO05D006258 6.7e-159 564.7 423 69.0
CARHR171240 Cardamine hirsuta HOM05D004961 ORTHO05D006258 1.2e-158 563.9 513 59.8
Aa31LG10G15080 Aethionema arabicum HOM05D004961 ORTHO05D006258 4.4e-158 562.0 494 60.5
Peaxi162Scf00021g01613 Petunia axillaris HOM05D004961 ORTHO05D006258 9.7e-158 560.8 454 64.8
Nitab4.5_0005372g0040 Nicotiana tabacum HOM05D004961 ORTHO05D006258 1.3e-157 560.5 454 64.8
Nitab4.5_0000457g0390 Nicotiana tabacum HOM05D004961 ORTHO05D006258 1.7e-157 560.1 527 59.0
arahy.Tifrunner.gnm1.ann1.0VBM10 Arachis hypogaea HOM05D004961 ORTHO05D006258 2.2e-157 559.7 460 63.0
arahy.Tifrunner.gnm1.ann1.T4E2VP Arachis hypogaea HOM05D004961 ORTHO05D006258 2.2e-157 559.7 460 63.0
Carub.0005s2761 Capsella rubella HOM05D004961 ORTHO05D006258 3.7e-157 558.9 502 59.6
AT3G60850 Arabidopsis thaliana HOM05D004961 ORTHO05D006258 4.8e-157 558.5 495 60.8
Cc02_g36640 Coffea canephora HOM05D004961 ORTHO05D006258 4.8e-157 558.5 454 63.9
THA.LOC104802441 Tarenaya hassleriana HOM05D004961 ORTHO05D006258 4.8e-157 558.5 504 59.1
CAN.G388.8 Capsicum annuum HOM05D004961 ORTHO05D006258 1.4e-156 557.0 453 64.0
AUR62004223 Chenopodium quinoa HOM05D004961 ORTHO05D006258 2.0e-155 553.1 471 59.9
ECA236G4958 Erigeron canadensis HOM05D004961 ORTHO05D006258 7.7e-155 551.2 531 56.9
Lalb_Chr07g0189751 Lupinus albus HOM05D004961 ORTHO05D006258 1.7e-154 550.1 434 63.8
SHI25769 Sapria himalayana HOM05D004961 ORTHO05D006258 1.7e-154 550.1 524 56.7
Migut.B01640 Erythranthe guttata HOM05D004961 ORTHO05D006258 2.2e-154 549.7 520 58.1
Psat4g195520 Pisum sativum HOM05D004961 ORTHO05D006258 3.8e-154 548.9 430 64.2
C08p35800 Brassica napus HOM05D004961 ORTHO05D006258 5.0e-154 548.5 494 59.9
BcaC07g40605 Brassica carinata HOM05D004961 ORTHO05D006258 6.5e-154 548.1 511 59.3
BolC8t51170H Brassica oleracea HOM05D004961 ORTHO05D006258 6.5e-154 548.1 511 59.3
BraA09t40736Z Brassica rapa HOM05D004961 ORTHO05D006258 1.5e-153 547.0 491 60.1
A09p53100 Brassica napus HOM05D004961 ORTHO05D006258 3.2e-153 545.8 491 59.9
Sopen01g037160 Solanum pennellii HOM05D004961 ORTHO05D006258 3.2e-153 545.8 453 63.1
Solyc01g091390.2 Solanum lycopersicum HOM05D004961 ORTHO05D006258 5.5e-153 545.0 453 63.1
PGSC0003DMG400012758 Solanum tuberosum HOM05D004961 ORTHO05D006258 7.2e-153 544.7 453 62.9
Oeu037913.2 Olea europaea HOM05D004961 ORTHO05D006258 3.6e-152 542.3 465 62.2
BcaC07g42645 Brassica carinata HOM05D004961 ORTHO05D006258 1.0e-151 540.8 495 59.6
Ah.05g174990 Amaranthus hybridus HOM05D004961 ORTHO05D006258 2.3e-151 539.7 452 61.7
Migut.N01639 Erythranthe guttata HOM05D004961 ORTHO05D006258 8.8e-151 537.7 450 62.7
Sc26g0001210 Simmondsia chinensis HOM05D004961 ORTHO05D006258 2.2e-149 533.1 449 61.7
BcaC08g45088 Brassica carinata HOM05D004961 ORTHO05D006258 1.1e-148 530.8 513 58.7
SEGI_19190 Sequoiadendron giganteum HOM05D004961 ORTHO05D006258 1.1e-148 530.8 465 60.4
C06p26950 Brassica napus HOM05D004961 ORTHO05D006258 1.4e-148 530.4 485 60.2
BolC6t37869H Brassica oleracea HOM05D004961 ORTHO05D006258 1.4e-148 530.4 485 60.2
DCAR_025114 Daucus carota HOM05D004961 ORTHO05D006258 2.4e-148 529.6 504 56.7
Glyma.01G143700 Glycine max HOM05D004961 ORTHO05D006258 1.6e-147 526.9 482 58.5
Phvul.010G084800 Phaseolus vulgaris HOM05D004961 ORTHO05D006258 7.7e-147 524.6 500 57.2
SGA_v2.0_scaffold11G05589 Striga asiatica HOM05D004961 ORTHO05D006258 3.8e-146 522.3 525 54.5
Glyma.03G023401 Glycine max HOM05D004961 ORTHO05D006258 8.6e-146 521.2 477 57.9
HanXRQChr06g0169541 Helianthus annuus HOM05D004961 ORTHO05D006258 1.9e-145 520.0 425 64.5
HPP92_025672 Vanilla planifolia HOM05D004961 ORTHO05D006258 5.5e-145 518.5 536 55.4
VMungo0331G0268 Vigna mungo HOM05D004961 ORTHO05D006258 6.1e-144 515.0 501 56.9
A07p25240 Brassica napus HOM05D004961 ORTHO05D006258 8.0e-144 514.6 519 57.2
Oeu005782.1 Olea europaea HOM05D004961 ORTHO05D006258 8.0e-144 514.6 481 58.2
ECA234G3702 Erigeron canadensis HOM05D004961 ORTHO05D006258 4.0e-143 512.3 522 54.0
AUR62013625 Chenopodium quinoa HOM05D004961 ORTHO05D006258 1.2e-142 510.8 422 61.6
BraA07t30166Z Brassica rapa HOM05D004961 ORTHO05D006258 1.7e-141 506.9 487 57.7
GSVIVG01027619001 Vitis vinifera HOM05D004961 ORTHO05D006258 1.7e-141 506.9 433 63.7
HanXRQChr09g0245711 Helianthus annuus HOM05D004961 ORTHO05D006258 6.6e-138 495.0 466 56.7
HanXRQChr03g0093851 Helianthus annuus HOM05D004961 ORTHO05D006258 4.7e-136 488.8 442 58.6
unitig_22.g6802 Utricularia gibba HOM05D004961 ORTHO05D006258 4.0e-135 485.7 366 69.4
Oeu003482.1 Olea europaea HOM05D004961 ORTHO05D006258 5.0e-130 468.8 466 56.9
ATR0582G166 Amborella trichopoda HOM05D004961 ORTHO05D006258 8.9e-127 458.0 454 52.9
Os03g0247100 Oryza sativa ssp. japonica HOM05D004961 ORTHO05D006258 1.4e-124 450.7 511 50.7
SMO358G0144 Selaginella moellendorffii HOM05D004961 ORTHO05D006258 4.7e-120 435.6 380 56.8
HanXRQChr16g0519241 Helianthus annuus HOM05D004961 ORTHO05D006258 1.1e-119 434.5 442 54.3
SMO164G0066 Selaginella moellendorffii HOM05D004961 ORTHO05D006258 1.2e-118 431.0 333 61.0
Zm00001eb398630 Zea mays HOM05D004961 ORTHO05D006258 1.3e-117 427.6 511 49.9
unitig_8.g3388 Utricularia gibba HOM05D004961 ORTHO05D006258 8.4e-109 398.3 335 62.4
Eucgr.D02450 Eucalyptus grandis HOM05D004961 ORTHO05D006258 4.8e-64 249.6 231 56.3
SGA_v2.0_scaffold43G16471 Striga asiatica HOM05D004961 ORTHO05D006258 1.2e-54 218.4 463 33.7
BcaB02g07397 Brassica carinata HOM05D004961 ORTHO05D006258 4.5e-54 216.5 257 52.5
BcaC07g40606 Brassica carinata HOM05D003135 ORTHO05D003715 1.9e-52 211.1 264 48.1
Nn1g01213 Nelumbo nucifera HOM05D004961 ORTHO05D006258 2.6e-41 174.1 179 52.0
Zm00001eb010600 Zea mays HOM05D004961 ORTHO05D006258 5.3e-39 166.4 189 50.3
SMO115G0102 Selaginella moellendorffii HOM05D004961 ORTHO05D037335 1.7e-29 134.8 350 30.3
Cpa.g.sc18.116 Carica papaya HOM05D004961 ORTHO05D006258 1.6e-27 128.3 127 58.3
BcaNung07137 Brassica carinata HOM05D004961 ORTHO05D006258 2.0e-25 121.3 76 77.6
HanXRQChr16g0519231 Helianthus annuus HOM05D004961 ORTHO05D006258 4.1e-23 113.6 99 57.6
AagrBONN_evm.TU.Sc2ySwM_344.1101 Anthoceros agrestis HOM05D004961 ORTHO05D006258 1.5e-20 105.1 166 36.7
unitig_22.g6801 Utricularia gibba HOM05D004961 ORTHO05D006258 4.1e-15 87.0 103 43.7
BcaNung07135 Brassica carinata HOM05D004961 ORTHO05D006258 2.0e-14 84.7 161 42.9
MELO3C015747.2 Cucumis melo HOM05D004961 ORTHO05D044953 8.6e-13 79.3 122 45.1
Pp3c17_9425 Physcomitrium patens HOM05D051217 ORTHO05D037335 1.4e-10 72.0 348 24.1
unitig_8.g3389 Utricularia gibba HOM05D004961 ORTHO05D006258 2.9e-08 64.3 101 42.6
BcaC07g40608 Brassica carinata HOM05D003135 ORTHO05D006258 5.4e-07 60.1 81 40.7
HanXRQChr12g0366651 Helianthus annuus HOM05D001845 ORTHO05D001878 1.6e-06 58.5 55 50.9


User provided reference genes

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