Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE11G0183 Ceratophyllum demersum HOM05D004572 ORTHO05D005425 2.1e-97 359.0 176 100.0
Aqoxy7G00153 Aquilegia oxysepala HOM05D004572 ORTHO05D005425 1.2e-20 104.0 147 40.1
Sc07g0008270 Simmondsia chinensis HOM05D004572 ORTHO05D005425 2.7e-20 102.8 212 34.4
Hund14323 Selenicereus undatus HOM05D004572 ORTHO05D005425 6.0e-20 101.7 214 32.2
TAR622G1008 Trochodendron aralioides HOM05D004924 ORTHO05D005896 1.3e-19 100.5 209 33.0
Glyma.09G283500 Glycine max HOM05D004572 ORTHO05D005425 6.6e-19 98.2 164 39.0
MBI12_g26901_MAGBIO Magnolia biondii HOM05D004572 ORTHO05D005425 4.3e-18 95.5 182 30.2
arahy.Tifrunner.gnm1.ann1.Z20ZUZ Arachis hypogaea HOM05D004572 ORTHO05D005425 7.3e-18 94.7 214 29.4
CsaV3_3G030260 Cucumis sativus L. HOM05D004572 ORTHO05D005425 7.3e-18 94.7 222 28.8
vmacro05137 Vaccinium macrocarpon HOM05D004572 ORTHO05D005425 9.6e-18 94.4 220 30.9
TAR629G0838 Trochodendron aralioides HOM05D004572 ORTHO05D005425 2.8e-17 92.8 140 36.4
ClCG07G002440 Citrullus lanatus HOM05D004572 ORTHO05D005425 3.6e-17 92.4 214 29.0
arahy.Tifrunner.gnm1.ann1.41JFP3 Arachis hypogaea HOM05D004572 ORTHO05D005425 6.2e-17 91.7 214 29.4
AUR62019030 Chenopodium quinoa HOM05D004572 ORTHO05D005425 6.2e-17 91.7 93 46.2
arahy.Tifrunner.gnm1.ann1.GWI8GZ Arachis hypogaea HOM05D004572 ORTHO05D005425 8.1e-17 91.3 214 28.5
Rhsim01G0089200 Rhododendron simsii HOM05D004572 ORTHO05D005425 1.1e-16 90.9 216 30.1
PSO675G6986 Papaver somniferum HOM05D004572 ORTHO05D005425 1.4e-16 90.5 84 45.2
Lalb_Chr20g0109201 Lupinus albus HOM05D004572 ORTHO05D005425 2.4e-16 89.7 217 30.4
DCAR_017646 Daucus carota HOM05D004572 ORTHO05D005425 3.1e-16 89.4 201 32.3
DCAR_023418 Daucus carota HOM05D004572 ORTHO05D005425 4.0e-16 89.0 201 30.3
Dinv09440 Davidia involucrata HOM05D004572 ORTHO05D005425 4.0e-16 89.0 218 29.8
PSO541G6108 Papaver somniferum HOM05D004572 ORTHO05D005425 5.3e-16 88.6 223 27.8
Sed0022149 Sechium edule HOM05D004572 ORTHO05D005425 5.3e-16 88.6 210 29.5
ECA233G3653 Erigeron canadensis HOM05D004572 ORTHO05D005425 6.9e-16 88.2 166 34.9
Os03g0253500 Oryza sativa ssp. japonica HOM05D004572 ORTHO05D005425 6.9e-16 88.2 74 45.9
Nn5g27612 Nelumbo nucifera HOM05D004572 ORTHO05D005425 9.0e-16 87.8 94 40.4
Cpa.g.sc21.98 Carica papaya HOM05D004572 ORTHO05D005425 1.2e-15 87.4 88 44.3
MELO3C022741.2 Cucumis melo HOM05D004572 ORTHO05D005425 1.2e-15 87.4 214 28.5
Manes.03G127200 Manihot esculenta HOM05D004572 ORTHO05D005425 1.2e-15 87.4 206 27.7
Psat6g099680 Pisum sativum HOM05D004572 ORTHO05D005425 1.2e-15 87.4 212 29.2
SGA_v2.0_scaffold27G11714 Striga asiatica HOM05D004572 ORTHO05D005425 1.2e-15 87.4 71 56.3
Manes.03G127100 Manihot esculenta HOM05D004572 ORTHO05D005425 2.0e-15 86.7 206 28.2
Lj2g0021533 Lotus japonicus HOM05D004572 ORTHO05D005425 2.6e-15 86.3 121 38.0
Oeu028098.1 Olea europaea HOM05D004572 ORTHO05D005425 2.6e-15 86.3 208 30.8
TWI32G1304 Tripterygium wilfordii HOM05D004572 ORTHO05D005425 2.6e-15 86.3 221 29.0
MSTRG.11833 Avicennia marina HOM05D004572 ORTHO05D005425 3.4e-15 85.9 67 58.2
CANSAT56G0747 Cannabis sativa HOM05D004572 ORTHO05D005425 3.4e-15 85.9 86 44.2
CANSAT56G1258 Cannabis sativa HOM05D004572 ORTHO05D005425 3.4e-15 85.9 86 44.2
PSO170G2332 Papaver somniferum HOM05D004572 ORTHO05D005425 3.4e-15 85.9 78 47.4
FAN21G2024 Fragaria x ananassa HOM05D004572 ORTHO05D005425 4.5e-15 85.5 213 29.6
Thecc.04G269400 Theobroma cacao HOM05D004572 ORTHO05D005425 4.5e-15 85.5 207 31.4
FAN16G2201 Fragaria x ananassa HOM05D004572 ORTHO05D005425 5.8e-15 85.1 213 29.1
RcHm_v2.0_Chr5g0038051 Rosa chinensis HOM05D004572 ORTHO05D005425 5.8e-15 85.1 213 28.2
ATR0579G060 Amborella trichopoda HOM05D004572 ORTHO05D005425 7.6e-15 84.7 224 27.7
Zm00001eb398470 Zea mays HOM05D004572 ORTHO05D005425 7.6e-15 84.7 68 52.9
ECA248G3611 Erigeron canadensis HOM05D004572 ORTHO05D005425 9.9e-15 84.3 159 32.7
RcHm_v2.0_Chr5g0037991 Rosa chinensis HOM05D004572 ORTHO05D005425 9.9e-15 84.3 180 31.1
Cfa012912 Carpinus fangiana HOM05D004572 ORTHO05D005425 1.3e-14 84.0 204 30.4
Duzib177G0040 Durio zibethinus HOM05D004572 ORTHO05D005425 1.3e-14 84.0 207 29.0
Duzib268G1853 Durio zibethinus HOM05D004572 ORTHO05D005425 1.3e-14 84.0 230 28.3
Lj8P410T5 Lonicera japonica HOM05D004572 ORTHO05D005425 1.3e-14 84.0 67 53.7
Medtr1g038340 Medicago truncatula HOM05D004572 ORTHO05D005425 1.3e-14 84.0 75 45.3
VMungo0720G3103 Vigna mungo HOM05D004572 ORTHO05D005425 1.3e-14 84.0 138 35.5
Ah.08g210120 Amaranthus hybridus HOM05D004572 ORTHO05D005425 1.7e-14 83.6 204 31.4
CSS0029181 Camellia sinensis var. sinensis HOM05D004572 ORTHO05D005425 1.7e-14 83.6 226 27.9
CSS0036523 Camellia sinensis var. sinensis HOM05D004572 ORTHO05D005425 1.7e-14 83.6 226 27.9
Gohir.D05G255680 Gossypium hirsutum HOM05D004572 ORTHO05D005425 1.7e-14 83.6 206 30.6
Gorai.009G267300 Gossypium raimondii HOM05D004572 ORTHO05D005425 1.7e-14 83.6 206 30.6
Ciclev10001464m.g Citrus clementina HOM05D004572 ORTHO05D005425 2.2e-14 83.2 203 31.0
Nitab4.5_0000907g0020 Nicotiana tabacum HOM05D004572 ORTHO05D005425 2.2e-14 83.2 206 29.6
BcaC05g27801 Brassica carinata HOM05D004572 ORTHO05D005425 2.9e-14 82.8 199 30.2
C05p37990 Brassica napus HOM05D004572 ORTHO05D005425 2.9e-14 82.8 199 30.2
Gohir.A05G253900 Gossypium hirsutum HOM05D004572 ORTHO05D005425 2.9e-14 82.8 164 32.9
Cfa012902 Carpinus fangiana HOM05D004572 ORTHO05D005425 3.8e-14 82.4 93 37.6
Cfa021184 Carpinus fangiana HOM05D004572 ORTHO05D005425 3.8e-14 82.4 93 38.7
Ca_12422_v3 Cicer arietinum L. HOM05D004572 ORTHO05D005425 3.8e-14 82.4 75 45.3
Ca_12425_v3 Cicer arietinum L. HOM05D004572 ORTHO05D005425 3.8e-14 82.4 75 45.3
BraA05t21310Z Brassica rapa HOM05D004572 ORTHO05D005425 4.9e-14 82.0 202 31.2
BolC5t32530H Brassica oleracea HOM05D004572 ORTHO05D005425 6.4e-14 81.6 199 30.2
FAN11G3304 Fragaria x ananassa HOM05D004572 ORTHO05D005425 6.4e-14 81.6 213 28.6
Phvul.003G004000 Phaseolus vulgaris HOM05D004572 ORTHO05D005425 6.4e-14 81.6 77 45.5
Phvul.003G026500 Phaseolus vulgaris HOM05D004572 ORTHO05D005425 6.4e-14 81.6 142 35.9
Potri.003G104200 Populus trichocarpa HOM05D004572 ORTHO05D005425 6.4e-14 81.6 81 44.4
SalBow4G0115 Salvia bowleyana HOM05D004572 ORTHO05D005425 6.4e-14 81.6 78 47.4
CiPaw.11G104400 Carya illinoinensis HOM05D004572 ORTHO05D005425 8.4e-14 81.3 213 30.0
COL.COLO4_28616 Corchorus olitorius HOM05D004572 ORTHO05D005425 8.4e-14 81.3 203 30.0
FvH4_3g22160 Fragaria vesca HOM05D004572 ORTHO05D005425 8.4e-14 81.3 213 28.6
Prupe.4G208700 Prunus persica HOM05D004572 ORTHO05D005425 8.4e-14 81.3 184 32.1
AUR62008525 Chenopodium quinoa HOM05D004572 ORTHO05D005425 1.1e-13 80.9 140 34.3
Prupe.4G208800 Prunus persica HOM05D004572 ORTHO05D005425 1.4e-13 80.5 82 42.7
Sp1g28990 Schrenkiella parvula HOM05D004572 ORTHO05D005425 1.4e-13 80.5 205 29.8
Haze_21257 Corylus avellana HOM05D004572 ORTHO05D005425 1.9e-13 80.1 203 29.1
Sed0007980 Sechium edule HOM05D004572 ORTHO05D005425 1.9e-13 80.1 77 44.2
TWI34G1093 Tripterygium wilfordii HOM05D004572 ORTHO05D005425 1.9e-13 80.1 177 33.3
Aqoxy5G04375 Aquilegia oxysepala HOM05D004572 ORTHO05D005425 3.2e-13 79.3 72 44.4
Sabra03G0071200 Salix brachista HOM05D004572 ORTHO05D005425 3.2e-13 79.3 80 42.5
PGSC0003DMG400029573 Solanum tuberosum HOM05D004572 ORTHO05D005425 3.2e-13 79.3 213 29.1
THA.LOC104815806 Tarenaya hassleriana HOM05D004572 ORTHO05D005425 3.2e-13 79.3 204 29.9
Thhalv10007601m.g Eutrema salsugineum HOM05D004572 ORTHO05D005425 4.2e-13 79.0 207 28.5
Nitab4.5_0001131g0030 Nicotiana tabacum HOM05D004572 ORTHO05D005425 4.2e-13 79.0 211 29.4
Migut.A00508 Erythranthe guttata HOM05D004572 ORTHO05D005425 5.4e-13 78.6 67 50.7
Peaxi162Scf00445g00102 Petunia axillaris HOM05D004572 ORTHO05D005425 5.4e-13 78.6 67 46.3
Hma1.2p1_0127F.1_g059630 Hydrangea macrophylla HOM05D004572 ORTHO05D005425 7.1e-13 78.2 150 30.7
Lsat_1_v5_gn_6_80001 Lactuca sativa HOM05D004572 ORTHO05D005425 9.3e-13 77.8 211 31.3
MD03G1208000 Malus domestica HOM05D004572 ORTHO05D005425 9.3e-13 77.8 138 31.9
MD11G1222200 Malus domestica HOM05D004572 ORTHO05D005425 9.3e-13 77.8 146 32.2
Sopen08g023180 Solanum pennellii HOM05D004572 ORTHO05D005425 9.3e-13 77.8 213 28.6
BcaB03g13695 Brassica carinata HOM05D004572 ORTHO05D005425 1.2e-12 77.4 203 30.0
Cc04_g13510 Coffea canephora HOM05D004572 ORTHO05D005425 1.6e-12 77.0 204 31.4
Glyma.07G197900 Glycine max HOM05D004572 ORTHO05D005425 1.6e-12 77.0 90 37.8
QL06p018920 Quercus lobata HOM05D004572 ORTHO05D005425 2.1e-12 76.6 72 45.8
QL93p0146_0040 Quercus lobata HOM05D004572 ORTHO05D005425 2.1e-12 76.6 72 45.8
Solyc08g074570.1 Solanum lycopersicum HOM05D004572 ORTHO05D005425 2.1e-12 76.6 213 28.2
FAN16G0157 Fragaria x ananassa HOM05D004572 ORTHO05D005425 2.7e-12 76.3 156 34.0
Carub.0007s1601 Capsella rubella HOM05D004572 ORTHO05D005425 3.5e-12 75.9 78 43.6
HanXRQChr03g0083281 Helianthus annuus HOM05D004572 ORTHO05D005425 3.5e-12 75.9 125 35.2
HanXRQChr04g0098951 Helianthus annuus HOM05D004572 ORTHO05D005425 4.6e-12 75.5 146 31.5
unitig_748.g8160 Utricularia gibba HOM05D004572 ORTHO05D005425 4.6e-12 75.5 71 45.1
AL1G47900 Arabidopsis lyrata HOM05D004572 ORTHO05D005425 6.0e-12 75.1 206 28.2
Sabra01G0100000 Salix brachista HOM05D004572 ORTHO05D005425 6.0e-12 75.1 72 44.4
QL12p001966 Quercus lobata HOM05D004572 ORTHO05D005425 7.9e-12 74.7 72 44.4
VMungo0251G2350 Vigna mungo HOM05D004572 ORTHO05D005425 7.9e-12 74.7 77 44.2
Carub.0001s3171 Capsella rubella HOM05D004572 ORTHO05D005425 1.0e-11 74.3 208 27.4
AL7G28150 Arabidopsis lyrata HOM05D004572 ORTHO05D005425 1.8e-11 73.6 87 42.5
CAN.G195.29 Capsicum annuum HOM05D004572 ORTHO05D005425 1.8e-11 73.6 150 32.0
Glyma.20G002200 Glycine max HOM05D004572 ORTHO05D005425 2.3e-11 73.2 138 31.2
CARHR032960 Cardamine hirsuta HOM05D004572 ORTHO05D005425 3.0e-11 72.8 215 27.0
Cc04_g13460 Coffea canephora HOM05D004572 ORTHO05D005425 5.1e-11 72.0 146 32.9
Aa31LG6G7980 Aethionema arabicum HOM05D004572 ORTHO05D005425 8.7e-11 71.2 209 27.3
MCO10G255 Micromonas commoda HOM05D004572 ORTHO05D005425 8.7e-11 71.2 64 43.8
SalBow7G4536 Salvia bowleyana HOM05D000482 ORTHO05D000349 8.7e-11 71.2 77 45.5
AT1G33520 Arabidopsis thaliana HOM05D004572 ORTHO05D005425 1.1e-10 70.9 210 28.6
Potri.001G129700 Populus trichocarpa HOM05D004572 ORTHO05D005425 1.1e-10 70.9 193 28.5
Mapoly0027s0115 Marchantia polymorpha HOM05D004572 ORTHO05D005425 1.9e-10 70.1 66 45.5
Pp3c1_630 Physcomitrium patens HOM05D004572 ORTHO05D005425 1.9e-10 70.1 136 35.3
Aa31LG9G8960 Aethionema arabicum HOM05D000113 ORTHO05D002571 3.3e-10 69.3 192 30.2
CARHR232410 Cardamine hirsuta HOM05D004572 ORTHO05D005425 5.6e-10 68.6 80 38.8
SEGI_34794 Sequoiadendron giganteum HOM05D004572 ORTHO05D005425 9.6e-10 67.8 72 44.4
AT4G25020 Arabidopsis thaliana HOM05D004572 ORTHO05D005425 2.1e-09 66.6 74 41.9
TWI74G0109 Tripterygium wilfordii HOM05D004572 ORTHO05D005425 2.8e-09 66.2 67 44.8
CDE04G1584 Ceratophyllum demersum HOM05D004572 ORTHO05D005425 6.2e-09 65.1 79 40.5
Thhalv10027298m.g Eutrema salsugineum HOM05D004572 ORTHO05D005425 6.2e-09 65.1 86 38.4
PGR042G2393 Punica granatum HOM05D004572 ORTHO05D005425 1.8e-08 63.5 180 32.2
Atru.chr6.2109 Acer truncatum HOM05D004572 ORTHO05D005425 2.4e-08 63.2 195 27.2
Cre06.g303500 Chlamydomonas reinhardtii HOM05D004572 ORTHO05D005425 5.3e-08 62.0 66 45.5
AagrBONN_evm.TU.Sc2ySwM_344.715 Anthoceros agrestis HOM05D004572 ORTHO05D005425 9.0e-08 61.2 94 34.0
TPR.G29795 Trifolium pratense HOM05D004572 ORTHO05D005425 1.5e-07 60.5 53 45.3
Eucgr.E01208 Eucalyptus grandis HOM05D004572 ORTHO05D005425 2.6e-07 59.7 68 47.1
PRCOL_00000575 Prasinoderma coloniale HOM05D004572 ORTHO05D005425 2.6e-07 59.7 62 45.2
Oeu048006.1 Olea europaea HOM05D004572 ORTHO05D005425 9.9e-07 57.8 51 49.0
HPP92_014435 Vanilla planifolia HOM05D004572 ORTHO05D005425 9.9e-07 57.8 142 29.6
SMO347G0031 Selaginella moellendorffii HOM05D004572 ORTHO05D005425 4.9e-06 55.5 64 42.2
AagrBONN_evm.TU.Sc2ySwM_344.5065 Anthoceros agrestis HOM05D004572 ORTHO05D005425 8.4e-06 54.7 62 37.1


User provided reference genes

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