Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE11G0172 Ceratophyllum demersum HOM05D005379 ORTHO05D006661 1.2e-163 579.7 287 100.0
TAR375G0328 Trochodendron aralioides HOM05D005379 ORTHO05D006661 6.2e-115 417.9 279 72.4
MBI04_g36330_MAGBIO Magnolia biondii HOM05D005379 ORTHO05D006661 9.2e-111 404.1 288 69.4
MBI04_g38758_MAGBIO Magnolia biondii HOM05D005379 ORTHO05D006661 4.6e-110 401.7 288 69.4
GSVIVG01013977001 Vitis vinifera HOM05D005379 ORTHO05D006661 6.8e-106 387.9 281 68.0
QL09p028045 Quercus lobata HOM05D005379 ORTHO05D006661 1.2e-105 387.1 287 66.6
TAR374G0427 Trochodendron aralioides HOM05D005379 ORTHO05D006661 1.2e-105 387.1 263 70.7
Cfa013572 Carpinus fangiana HOM05D005379 ORTHO05D006661 5.4e-103 378.3 287 65.9
Dinv06588 Davidia involucrata HOM05D005379 ORTHO05D006661 7.1e-103 377.9 262 69.8
Prupe.2G273100 Prunus persica HOM05D005379 ORTHO05D006661 2.7e-102 375.9 280 67.1
CSS0027857 Camellia sinensis var. sinensis HOM05D005379 ORTHO05D006661 1.3e-101 373.6 283 65.4
MD07G1249400 Malus domestica HOM05D005379 ORTHO05D006661 3.9e-101 372.1 280 66.4
Ciclev10005581m.g Citrus clementina HOM05D005379 ORTHO05D006661 6.6e-101 371.3 279 67.7
FvH4_7g27000 Fragaria vesca HOM05D005379 ORTHO05D006661 6.6e-101 371.3 280 65.7
Thecc.03G149400 Theobroma cacao HOM05D005379 ORTHO05D006661 8.7e-101 370.9 282 66.0
CANSAT56G1299 Cannabis sativa HOM05D005379 ORTHO05D006661 1.5e-100 370.2 288 64.9
TWI23G1062 Tripterygium wilfordii HOM05D005379 ORTHO05D006661 1.9e-100 369.8 281 65.1
Eucgr.K00130 Eucalyptus grandis HOM05D005379 ORTHO05D006661 3.3e-100 369.0 289 65.4
CANSAT56G0595 Cannabis sativa HOM05D005379 ORTHO05D006661 7.3e-100 367.9 288 64.6
MD01G1177600 Malus domestica HOM05D005379 ORTHO05D006661 9.6e-100 367.5 282 66.3
AUR62002241 Chenopodium quinoa HOM05D005379 ORTHO05D006661 1.2e-99 367.1 286 64.3
Gohir.A07G043200 Gossypium hirsutum HOM05D005379 ORTHO05D006661 1.6e-99 366.7 282 65.2
Actinidia31774 Actinidia chinensis HOM05D005379 ORTHO05D006661 3.6e-99 365.5 283 65.7
Glyma.15G056200 Glycine max HOM05D005379 ORTHO05D006661 3.6e-99 365.5 286 65.0
Manes.14G038300 Manihot esculenta HOM05D005379 ORTHO05D006661 4.7e-99 365.2 282 64.5
Hund11852 Selenicereus undatus HOM05D005379 ORTHO05D006661 6.2e-99 364.8 288 64.9
Lsat_1_v5_gn_8_9541 Lactuca sativa HOM05D005379 ORTHO05D006661 8.1e-99 364.4 281 64.8
PSO063G0621 Papaver somniferum HOM05D005379 ORTHO05D006661 8.1e-99 364.4 282 64.5
Gorai.001G050800 Gossypium raimondii HOM05D005379 ORTHO05D006661 1.1e-98 364.0 282 64.5
AUR62015453 Chenopodium quinoa HOM05D005379 ORTHO05D006661 1.4e-98 363.6 280 64.6
Sc18g0007310 Simmondsia chinensis HOM05D005379 ORTHO05D006661 1.8e-98 363.2 257 67.7
CsaV3_6G041840 Cucumis sativus L. HOM05D005379 ORTHO05D006661 3.1e-98 362.5 289 63.7
PGR004G0100 Punica granatum HOM05D005379 ORTHO05D006661 6.9e-98 361.3 281 65.5
ClCG01G015600 Citrullus lanatus HOM05D005379 ORTHO05D006661 9.0e-98 360.9 289 63.7
CiPaw.08G041400 Carya illinoinensis HOM05D005379 ORTHO05D006661 1.2e-97 360.5 223 77.6
EL10Ac3g05878 Beta vulgaris HOM05D005379 ORTHO05D006661 2.0e-97 359.8 288 63.5
MELO3C008037.2 Cucumis melo HOM05D005379 ORTHO05D006661 3.4e-97 359.0 289 63.3
Glyma.08G176800 Glycine max HOM05D005379 ORTHO05D006661 3.4e-97 359.0 287 63.4
Hund04565 Selenicereus undatus HOM05D005379 ORTHO05D006661 5.8e-97 358.2 254 67.7
Solyc06g034100.4 Solanum lycopersicum HOM05D005379 ORTHO05D006661 5.8e-97 358.2 277 63.9
Potri.003G151600 Populus trichocarpa HOM05D005379 ORTHO05D006661 7.6e-97 357.8 263 66.9
Lalb_Chr05g0217631 Lupinus albus HOM05D005379 ORTHO05D006661 9.9e-97 357.5 287 62.4
PSO782G5074 Papaver somniferum HOM05D005379 ORTHO05D006661 1.7e-96 356.7 312 59.6
ECA233G0107 Erigeron canadensis HOM05D003586 ORTHO05D004036 2.9e-96 355.9 286 62.2
Sopen06g010750 Solanum pennellii HOM05D005379 ORTHO05D006661 2.9e-96 355.9 277 63.5
VMungo0540G0153 Vigna mungo HOM05D005379 ORTHO05D006661 2.9e-96 355.9 280 64.3
Phvul.006G202400 Phaseolus vulgaris HOM05D005379 ORTHO05D006661 6.4e-96 354.8 286 62.6
Sed0000219 Sechium edule HOM05D005379 ORTHO05D006661 8.4e-96 354.4 284 64.4
Ah.13g071160 Amaranthus hybridus HOM05D005379 ORTHO05D006661 1.9e-95 353.2 284 62.7
Rhsim03G0161700 Rhododendron simsii HOM05D005379 ORTHO05D006661 3.2e-95 352.4 302 60.3
Psat1g214640 Pisum sativum HOM05D005379 ORTHO05D006661 4.2e-95 352.1 267 65.2
MSTRG.8845 Avicennia marina HOM05D005379 ORTHO05D006661 1.6e-94 350.1 284 63.0
ATR0057G081 Amborella trichopoda HOM05D005379 ORTHO05D006661 3.5e-94 349.0 272 63.6
THA.LOC104811535 Tarenaya hassleriana HOM05D005379 ORTHO05D006661 1.0e-93 347.4 252 67.5
Ca_00152_v3 Cicer arietinum L. HOM05D005379 ORTHO05D006661 3.0e-93 345.9 276 63.4
Medtr2g009320 Medicago truncatula HOM05D005379 ORTHO05D006661 3.0e-93 345.9 231 71.0
Lj3g0027387 Lotus japonicus HOM05D005379 ORTHO05D006661 8.7e-93 344.4 247 67.6
Os07g0490300 Oryza sativa ssp. japonica HOM05D005379 ORTHO05D006661 1.5e-92 343.6 226 73.0
Cc02_g04670 Coffea canephora HOM05D005379 ORTHO05D006661 1.9e-92 343.2 250 67.6
FAN06G0815 Fragaria x ananassa HOM05D005379 ORTHO05D006661 2.5e-92 342.8 273 63.4
CARHR256800 Cardamine hirsuta HOM05D005379 ORTHO05D006661 1.3e-91 340.5 247 66.4
Oeu042535.3 Olea europaea HOM05D005379 ORTHO05D006661 1.3e-91 340.5 217 73.3
Nitab4.5_0002211g0080 Nicotiana tabacum HOM05D005379 ORTHO05D006661 2.8e-91 339.3 287 59.6
BcaB08g35480 Brassica carinata HOM05D005379 ORTHO05D006661 3.6e-91 339.0 247 66.8
HanXRQChr05g0139501 Helianthus annuus HOM05D005379 ORTHO05D006661 4.8e-91 338.6 222 73.0
AT5G51220 Arabidopsis thaliana HOM05D005379 ORTHO05D006661 6.2e-91 338.2 281 59.1
arahy.Tifrunner.gnm1.ann1.3L844V Arachis hypogaea HOM05D005379 ORTHO05D006661 8.1e-91 337.8 247 67.2
Carub.0008s1126 Capsella rubella HOM05D005379 ORTHO05D006661 1.1e-90 337.4 279 60.2
Migut.F00521 Erythranthe guttata HOM05D005379 ORTHO05D006661 1.4e-90 337.0 282 59.9
HanXRQChr08g0222701 Helianthus annuus HOM05D005379 ORTHO05D006661 2.4e-90 336.3 221 71.9
BcaC04g20721 Brassica carinata HOM05D005379 ORTHO05D006661 9.0e-90 334.3 248 66.5
Sp6g13420 Schrenkiella parvula HOM05D005379 ORTHO05D006661 9.0e-90 334.3 281 60.1
RcHm_v2.0_Chr1g0373791 Rosa chinensis HOM05D005379 ORTHO05D006661 1.5e-89 333.6 253 66.0
Thhalv10014342m.g Eutrema salsugineum HOM05D005379 ORTHO05D006661 2.9e-88 329.3 247 66.4
Nitab4.5_0010756g0010 Nicotiana tabacum HOM05D005379 ORTHO05D006661 2.9e-88 329.3 287 58.9
Lj1A584T32 Lonicera japonica HOM05D005379 ORTHO05D006661 3.8e-88 328.9 249 64.7
AL8G25500 Arabidopsis lyrata HOM05D005379 ORTHO05D006661 4.9e-88 328.6 217 71.0
arahy.Tifrunner.gnm1.ann1.8RST7H Arachis hypogaea HOM05D005379 ORTHO05D006661 1.1e-87 327.4 254 64.6
Zm00001eb321690 Zea mays HOM05D005379 ORTHO05D006661 1.6e-86 323.6 226 69.0
Aa31LG3G7760 Aethionema arabicum HOM05D005379 ORTHO05D006661 3.5e-86 322.4 277 61.4
vmacro06833 Vaccinium macrocarpon HOM05D005379 ORTHO05D006661 3.5e-86 322.4 285 57.5
ECA238G1883 Erigeron canadensis HOM05D005379 ORTHO05D006661 1.3e-85 320.5 245 64.1
FAN10G0849 Fragaria x ananassa HOM05D005379 ORTHO05D006661 2.3e-85 319.7 249 64.3
HPP92_009947 Vanilla planifolia HOM05D005379 ORTHO05D006227 8.7e-85 317.8 254 63.8
HanXRQChr07g0205531 Helianthus annuus HOM05D005379 ORTHO05D006661 1.1e-84 317.4 222 68.9
Nitab4.5_0000262g0030 Nicotiana tabacum HOM05D005379 ORTHO05D006661 1.1e-84 317.4 251 64.9
SalBow5G2200 Salvia bowleyana HOM05D005379 ORTHO05D006661 9.6e-84 314.3 326 52.1
FAN03G3283 Fragaria x ananassa HOM05D005379 ORTHO05D006661 1.3e-83 313.9 249 63.5
SGA_v2.0_scaffold60G20811 Striga asiatica HOM05D005379 ORTHO05D006661 1.3e-83 313.9 314 54.5
DCAR_018078 Daucus carota HOM05D005379 ORTHO05D006661 2.1e-83 313.2 283 54.4
Haze_22191 Corylus avellana HOM05D005379 ORTHO05D006661 3.7e-83 312.4 343 51.6
Nitab4.5_0000448g0020 Nicotiana tabacum HOM05D005379 ORTHO05D006661 3.7e-83 312.4 250 64.0
CAN.G174.21 Capsicum annuum HOM05D005379 ORTHO05D006661 5.3e-82 308.5 248 61.7
Hma1.2p1_0456F.1_g156820 Hydrangea macrophylla HOM05D005379 ORTHO05D006661 9.9e-81 304.3 262 60.7
SalBow7G1847 Salvia bowleyana HOM05D005379 ORTHO05D006661 9.9e-81 304.3 335 49.6
Sabra03G0109800 Salix brachista HOM05D005379 ORTHO05D006661 1.9e-79 300.1 223 66.4
COL.COLO4_37344 Corchorus olitorius HOM05D003586 ORTHO05D004036 5.5e-79 298.5 227 62.6
Gohir.D07G047600 Gossypium hirsutum HOM05D005379 ORTHO05D006661 7.9e-78 294.7 184 76.1
Cpa.g.sc13.263 Carica papaya HOM05D005379 ORTHO05D006661 3.0e-77 292.7 215 68.8
SalBow7G3941 Salvia bowleyana HOM05D005379 ORTHO05D006661 2.5e-76 289.7 251 58.2
C09p39890 Brassica napus HOM05D005379 ORTHO05D006661 2.8e-75 286.2 216 65.7
BolC9t56888H Brassica oleracea HOM05D005379 ORTHO05D006661 2.8e-75 286.2 216 65.7
Peaxi162Scf00304g01113 Petunia axillaris HOM05D005379 ORTHO05D006661 6.2e-75 285.0 228 62.3
A10p07900 Brassica napus HOM05D005379 ORTHO05D006661 1.1e-74 284.3 216 64.4
BraSC35t46008Z Brassica rapa HOM05D005379 ORTHO05D006661 1.1e-74 284.3 216 64.4
Peaxi162Scf00167g00730 Petunia axillaris HOM05D005379 ORTHO05D006661 3.1e-74 282.7 169 79.3
Zm00001eb105230 Zea mays HOM05D005379 ORTHO05D006661 1.0e-72 277.7 179 73.7
Actinidia31671 Actinidia chinensis HOM05D005379 ORTHO05D006661 1.9e-71 273.5 183 72.1
Oeu022464.1 Olea europaea HOM05D005379 ORTHO05D006661 2.8e-67 259.6 166 74.7
Manes.06G131601 Manihot esculenta HOM05D005379 ORTHO05D006661 8.5e-64 248.1 243 55.6
TPR.G9516 Trifolium pratense HOM05D005379 ORTHO05D006661 3.6e-62 242.7 164 69.5
Mapoly0029s0089 Marchantia polymorpha HOM05D005379 ORTHO05D006661 2.5e-60 236.5 210 53.3
AagrBONN_evm.TU.Sc2ySwM_228.472 Anthoceros agrestis HOM05D005379 ORTHO05D006661 1.1e-58 231.1 228 48.7
Pp3c8_7310 Physcomitrium patens HOM05D005379 ORTHO05D006661 1.0e-56 224.6 249 43.8
FAN06G1013 Fragaria x ananassa HOM05D005379 ORTHO05D006661 7.9e-54 214.9 143 70.6
CBR_g48514 Chara braunii HOM05D005379 ORTHO05D006661 2.3e-53 213.4 212 46.2
CANSAT56G1106 Cannabis sativa HOM05D005379 ORTHO05D006661 5.7e-52 208.8 135 71.9
SMO361G0220 Selaginella moellendorffii HOM05D005379 ORTHO05D006661 1.3e-51 207.6 198 51.0
BcaB05g24017 Brassica carinata HOM05D005379 ORTHO05D006661 2.5e-47 193.4 162 62.3
unitig_0.g2509 Utricularia gibba HOM05D005379 ORTHO05D006661 1.8e-42 177.2 137 63.5
Lalb_Chr16g0382791 Lupinus albus HOM05D005379 ORTHO05D006661 3.8e-40 169.5 151 57.0
CANSAT56G1775 Cannabis sativa HOM05D005379 ORTHO05D006661 5.5e-39 165.6 105 71.4
Dinv06594 Davidia involucrata HOM05D005379 ORTHO05D006661 1.7e-32 144.1 132 56.8
MCO01G548 Micromonas commoda HOM05D005379 ORTHO05D006661 1.6e-25 120.9 190 33.2
A02p12440 Brassica napus HOM05D005379 ORTHO05D006661 5.9e-25 119.0 99 60.6
BraA02t06308Z Brassica rapa HOM05D005379 ORTHO05D006661 5.0e-24 115.9 99 58.6
Ah.13g066320 Amaranthus hybridus HOM05D005379 ORTHO05D006661 2.5e-23 113.6 130 50.0
CDE02G1103 Ceratophyllum demersum HOM05D005379 ORTHO05D006661 3.3e-23 113.2 281 32.7
Cre01.g052050 Chlamydomonas reinhardtii HOM05D005379 ORTHO05D006661 2.1e-22 110.5 187 34.8
BcaC03g14620 Brassica carinata HOM05D005379 ORTHO05D006661 3.4e-20 103.2 82 57.3
BolC2t08192H Brassica oleracea HOM05D005379 ORTHO05D006661 8.3e-19 98.6 69 66.7
Ah.13g066300 Amaranthus hybridus HOM05D005379 ORTHO05D006661 3.9e-16 89.7 118 44.1
HPP92_009967 Vanilla planifolia HOM05D005379 ORTHO05D006661 1.5e-15 87.8 83 53.0
Lalb_Chr16g0382801 Lupinus albus HOM05D005379 ORTHO05D006661 4.3e-15 86.3 86 53.5
SEGI_00850 Sequoiadendron giganteum HOM05D005379 ORTHO05D006661 2.4e-10 70.5 47 66.0
HPP92_009968 Vanilla planifolia HOM05D005379 ORTHO05D006661 4.1e-10 69.7 40 77.5
C02p20560 Brassica napus HOM05D005379 ORTHO05D006661 1.1e-07 61.6 52 53.8
RcHm_v2.0_Chr1g0373801 Rosa chinensis HOM05D005379 ORTHO05D006661 9.5e-07 58.5 33 78.8


User provided reference genes

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