Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE11G0170 Ceratophyllum demersum HOM05D001081 ORTHO05D007101 3.1e-63 245.0 125 100.0
CDE05G3015 Ceratophyllum demersum HOM05D001081 ORTHO05D007101 4.8e-56 221.1 131 89.3
Nn6g34886 Nelumbo nucifera HOM05D001081 ORTHO05D007101 6.7e-50 200.7 126 83.3
Nn3g16671 Nelumbo nucifera HOM05D001081 ORTHO05D007101 8.8e-50 200.3 126 83.3
TAR625G0271 Trochodendron aralioides HOM05D001081 ORTHO05D007101 1.3e-48 196.4 127 81.1
Aqoxy3G01434 Aquilegia oxysepala HOM05D001081 ORTHO05D007101 1.1e-47 193.4 126 80.2
Glyma.05G143900 Glycine max HOM05D001081 ORTHO05D007101 1.4e-47 193.0 125 78.4
Lj4P697T30 Lonicera japonica HOM05D001081 ORTHO05D007101 2.4e-47 192.2 124 78.2
Aqoxy4G03008 Aquilegia oxysepala HOM05D001081 ORTHO05D007101 3.1e-47 191.8 126 78.6
TAR381G1700 Trochodendron aralioides HOM05D001081 ORTHO05D007101 7.0e-47 190.7 127 79.5
Lalb_Chr13g0294051 Lupinus albus HOM05D001081 ORTHO05D007101 1.2e-46 189.9 128 76.6
Lj5g0017992 Lotus japonicus HOM05D001081 ORTHO05D007101 1.6e-46 189.5 127 78.0
PGR083G2221 Punica granatum HOM05D001081 ORTHO05D007101 1.6e-46 189.5 126 77.8
Ah.03g146510 Amaranthus hybridus HOM05D001081 ORTHO05D007101 2.0e-46 189.1 128 76.6
Ah.05g173160 Amaranthus hybridus HOM05D001081 ORTHO05D007101 2.0e-46 189.1 128 76.6
GSVIVG01009969001 Vitis vinifera HOM05D001081 ORTHO05D007101 2.0e-46 189.1 124 79.8
HanXRQChr14g0429651 Helianthus annuus HOM05D001081 ORTHO05D007101 2.7e-46 188.7 124 76.6
Lj4g0009093 Lotus japonicus HOM05D001081 ORTHO05D007101 2.7e-46 188.7 127 76.4
Cpa.g.sc3.88 Carica papaya HOM05D001081 ORTHO05D007101 4.5e-46 188.0 130 76.9
ECA238G0006 Erigeron canadensis HOM05D001081 ORTHO05D007101 4.5e-46 188.0 131 74.0
QL09p008866 Quercus lobata HOM05D001081 ORTHO05D007101 4.5e-46 188.0 127 75.6
QL09p009112 Quercus lobata HOM05D001081 ORTHO05D007101 4.5e-46 188.0 127 75.6
Haze_00208 Corylus avellana HOM05D001081 ORTHO05D004708 7.7e-46 187.2 127 75.6
Cfa016232 Carpinus fangiana HOM05D001081 ORTHO05D007101 1.0e-45 186.8 127 75.6
Glyma.08G100200 Glycine max HOM05D001081 ORTHO05D007101 1.0e-45 186.8 125 76.0
Phvul.003G125501 Phaseolus vulgaris HOM05D001081 ORTHO05D007101 1.3e-45 186.4 125 77.6
AUR62023429 Chenopodium quinoa HOM05D001081 ORTHO05D007101 1.7e-45 186.0 127 75.6
AUR62018052 Chenopodium quinoa HOM05D001081 ORTHO05D007101 2.2e-45 185.7 127 75.6
Cc10_g01340 Coffea canephora HOM05D001081 ORTHO05D007101 2.2e-45 185.7 129 76.0
VMungo0251G0734 Vigna mungo HOM05D001081 ORTHO05D007101 2.2e-45 185.7 125 76.0
Phvul.001G061700 Phaseolus vulgaris HOM05D001081 ORTHO05D007101 2.9e-45 185.3 125 76.0
TWI74G0183 Tripterygium wilfordii HOM05D001081 ORTHO05D007101 2.9e-45 185.3 127 75.6
Hund21005 Selenicereus undatus HOM05D001081 ORTHO05D007101 3.8e-45 184.9 127 75.6
PGSC0003DMG401028646 Solanum tuberosum HOM05D001081 ORTHO05D007101 3.8e-45 184.9 130 73.1
PGSC0003DMG402028646 Solanum tuberosum HOM05D001081 ORTHO05D007101 3.8e-45 184.9 130 73.1
Ciclev10022846m.g Citrus clementina HOM05D001081 ORTHO05D007101 5.0e-45 184.5 125 75.2
Psat7g080240 Pisum sativum HOM05D001081 ORTHO05D007101 5.0e-45 184.5 125 76.0
CANSAT21G1508 Cannabis sativa HOM05D001081 ORTHO05D007101 6.5e-45 184.1 125 76.0
PSO541G4732 Papaver somniferum HOM05D001081 ORTHO05D007101 6.5e-45 184.1 127 74.8
PSO675G3624 Papaver somniferum HOM05D001081 ORTHO05D007101 6.5e-45 184.1 127 74.8
Sc13g0009920 Simmondsia chinensis HOM05D001081 ORTHO05D007101 6.5e-45 184.1 127 77.2
CiPaw.06G046200 Carya illinoinensis HOM05D001081 ORTHO05D007101 8.5e-45 183.7 127 75.6
Sed0012325 Sechium edule HOM05D001081 ORTHO05D007101 8.5e-45 183.7 128 73.4
TPR.G9557 Trifolium pratense HOM05D001081 ORTHO05D007101 8.5e-45 183.7 125 76.8
vmacro12512 Vaccinium macrocarpon HOM05D001081 ORTHO05D007101 8.5e-45 183.7 128 74.2
Duzib068G1165 Durio zibethinus HOM05D001081 ORTHO05D007101 1.5e-44 183.0 125 76.8
Duzib205G0894 Durio zibethinus HOM05D001081 ORTHO05D007101 1.9e-44 182.6 125 75.2
Ca_18157_v3 Cicer arietinum L. HOM05D001081 ORTHO05D007101 2.5e-44 182.2 125 76.0
CAN.G411.51 Capsicum annuum HOM05D001081 ORTHO05D007101 3.2e-44 181.8 128 71.9
Thecc.03G199300 Theobroma cacao HOM05D001081 ORTHO05D007101 3.2e-44 181.8 125 76.0
Lsat_1_v5_gn_2_7800 Lactuca sativa HOM05D000015 ORTHO05D002445 5.5e-44 181.0 125 74.4
Gohir.A05G100100 Gossypium hirsutum HOM05D001081 ORTHO05D007101 7.2e-44 180.6 131 73.3
DCAR_013886 Daucus carota HOM05D001081 ORTHO05D007101 9.4e-44 180.3 124 72.6
Eucgr.F01156 Eucalyptus grandis HOM05D001081 ORTHO05D007101 9.4e-44 180.3 126 74.6
Peaxi162Scf00071g00017 Petunia axillaris HOM05D001081 ORTHO05D007101 1.2e-43 179.9 128 73.4
Atru.chr12.2201 Acer truncatum HOM05D001081 ORTHO05D007101 1.6e-43 179.5 132 72.7
MBI07_g23667_MAGBIO Magnolia biondii HOM05D001081 ORTHO05D007101 1.6e-43 179.5 129 74.4
Gohir.D05G099900 Gossypium hirsutum HOM05D001081 ORTHO05D007101 2.7e-43 178.7 131 72.5
Gorai.009G103900 Gossypium raimondii HOM05D001081 ORTHO05D007101 2.7e-43 178.7 131 72.5
Manes.18G126800 Manihot esculenta HOM05D001081 ORTHO05D007101 3.6e-43 178.3 126 74.6
MSTRG.22347 Avicennia marina HOM05D001081 ORTHO05D007101 8.0e-43 177.2 125 72.0
FvH4_7g31560 Fragaria vesca HOM05D001081 ORTHO05D007101 8.0e-43 177.2 125 74.4
FAN06G0656 Fragaria x ananassa HOM05D001081 ORTHO05D007101 8.0e-43 177.2 125 74.4
SalBow6G0310 Salvia bowleyana HOM05D001081 ORTHO05D007101 8.0e-43 177.2 125 72.8
COL.COLO4_16767 Corchorus olitorius HOM05D001081 ORTHO05D007101 1.0e-42 176.8 125 72.0
Medtr8g079498 Medicago truncatula HOM05D001081 ORTHO05D007101 1.0e-42 176.8 126 73.8
Nitab4.5_0004146g0010 Nicotiana tabacum HOM05D001081 ORTHO05D007101 1.4e-42 176.4 128 71.1
EL10Ac1g00785 Beta vulgaris HOM05D001081 ORTHO05D007101 2.3e-42 175.6 125 73.6
MELO3C008496.2 Cucumis melo HOM05D001081 ORTHO05D007101 2.3e-42 175.6 131 70.2
FAN10G3364 Fragaria x ananassa HOM05D001081 ORTHO05D007101 2.3e-42 175.6 125 73.6
FAN10G4231 Fragaria x ananassa HOM05D001081 ORTHO05D007101 2.3e-42 175.6 125 73.6
unitig_32.g11232 Utricularia gibba HOM05D001081 ORTHO05D007101 3.0e-42 175.3 125 70.4
vmacro07565 Vaccinium macrocarpon HOM05D001081 ORTHO05D007101 3.0e-42 175.3 128 71.1
RcHm_v2.0_Chr1g0380551 Rosa chinensis HOM05D001081 ORTHO05D007101 4.0e-42 174.9 125 72.8
Sed0024875 Sechium edule HOM05D001081 ORTHO05D007101 4.0e-42 174.9 128 71.9
SGA_v2.0_scaffold19G08564 Striga asiatica HOM05D001081 ORTHO05D007101 4.0e-42 174.9 125 70.4
THA.LOC104798899 Tarenaya hassleriana HOM05D001081 ORTHO05D007101 4.0e-42 174.9 131 67.9
FAN06G3917 Fragaria x ananassa HOM05D001081 ORTHO05D007101 5.2e-42 174.5 125 73.6
Nitab4.5_0004513g0030 Nicotiana tabacum HOM05D001081 ORTHO05D007101 5.2e-42 174.5 128 70.3
Potri.012G015800 Populus trichocarpa HOM05D001081 ORTHO05D007101 8.8e-42 173.7 127 70.1
SGA_v2.0_scaffold25G11207 Striga asiatica HOM05D001081 ORTHO05D007101 8.8e-42 173.7 125 70.4
CsaV3_3G019840 Cucumis sativus L. HOM05D001081 ORTHO05D007101 1.2e-41 173.3 131 70.2
Sopen12g021840 Solanum pennellii HOM05D001081 ORTHO05D007101 1.2e-41 173.3 130 68.5
Atru.chr9.478 Acer truncatum HOM05D001081 ORTHO05D007101 1.5e-41 172.9 132 69.7
Os05g0114600 Oryza sativa ssp. japonica HOM05D001081 ORTHO05D007101 1.5e-41 172.9 124 73.4
Potri.015G012700 Populus trichocarpa HOM05D001081 ORTHO05D007101 1.5e-41 172.9 127 70.1
FAN01G2588 Fragaria x ananassa HOM05D001081 ORTHO05D007101 2.0e-41 172.6 125 72.8
Sopen12g021900 Solanum pennellii HOM05D001081 ORTHO05D007101 2.6e-41 172.2 130 68.5
Migut.N03179 Erythranthe guttata HOM05D001081 ORTHO05D007101 3.4e-41 171.8 125 70.4
FAN03G0412 Fragaria x ananassa HOM05D001081 ORTHO05D007101 3.4e-41 171.8 127 71.7
THA.LOC104823111 Tarenaya hassleriana HOM05D001081 ORTHO05D007101 7.5e-41 170.6 131 66.4
A01p13390 Brassica napus HOM05D001081 ORTHO05D007101 1.3e-40 169.9 131 67.9
BraA01t01281Z Brassica rapa HOM05D001081 ORTHO05D007101 1.3e-40 169.9 131 67.9
Carub.0007s1934 Capsella rubella HOM05D001081 ORTHO05D007101 1.7e-40 169.5 131 67.9
Thhalv10026223m.g Eutrema salsugineum HOM05D001081 ORTHO05D007101 1.7e-40 169.5 131 67.9
AL7G31700 Arabidopsis lyrata HOM05D001081 ORTHO05D007101 2.2e-40 169.1 131 67.9
BcaC09g51172 Brassica carinata HOM05D001081 ORTHO05D007101 3.7e-40 168.3 131 67.9
BcaNung05107 Brassica carinata HOM05D001081 ORTHO05D007101 3.7e-40 168.3 131 67.9
BolC1t01570H Brassica oleracea HOM05D001081 ORTHO05D007101 3.7e-40 168.3 131 67.9
Sp7g20190 Schrenkiella parvula HOM05D001081 ORTHO05D007101 4.8e-40 167.9 131 67.9
Solyc12g042700.3 Solanum lycopersicum HOM05D001081 ORTHO05D007101 4.8e-40 167.9 130 66.9
C01p16100 Brassica napus HOM05D001081 ORTHO05D007101 6.3e-40 167.5 131 67.9
SHI02421 Sapria himalayana HOM05D006156 ORTHO05D007101 6.3e-40 167.5 125 68.8
AT4G22000 Arabidopsis thaliana HOM05D001081 ORTHO05D007101 8.3e-40 167.2 131 67.2
Zm00001eb355650 Zea mays HOM05D001081 ORTHO05D007101 8.3e-40 167.2 124 74.2
Prupe.2G309800 Prunus persica HOM05D001081 ORTHO05D007101 2.4e-39 165.6 127 66.9
Aa31LG6G3950 Aethionema arabicum HOM05D001081 ORTHO05D007101 3.1e-39 165.2 131 66.4
MD07G1288300 Malus domestica HOM05D001081 ORTHO05D007101 2.0e-38 162.5 129 66.7
HPP92_008968 Vanilla planifolia HOM05D001081 ORTHO05D007101 2.7e-38 162.2 111 73.9
CARHR228810 Cardamine hirsuta HOM05D001081 ORTHO05D007101 5.9e-38 161.0 132 65.9
AUR62013725 Chenopodium quinoa HOM05D001081 ORTHO05D007101 9.5e-36 153.7 106 75.5
MSTRG.25269 Avicennia marina HOM05D001081 ORTHO05D007101 2.1e-35 152.5 168 52.4
SEGI_15379 Sequoiadendron giganteum HOM05D001081 ORTHO05D007101 8.0e-35 150.6 129 67.4
ATR1134G096 Amborella trichopoda HOM05D001081 ORTHO05D007101 1.3e-32 143.3 96 77.1
BcaB03g11721 Brassica carinata HOM05D001081 ORTHO05D007101 3.0e-26 122.1 103 68.9
Actinidia17007 Actinidia chinensis HOM05D001081 ORTHO05D007101 9.8e-25 117.1 82 73.2
CSS0017659 Camellia sinensis var. sinensis HOM05D001081 ORTHO05D007101 1.3e-24 116.7 82 75.6
ClCG05G008950 Citrullus lanatus HOM05D001081 ORTHO05D007101 2.4e-23 112.5 91 69.2
Gorai.006G039100 Gossypium raimondii HOM05D001081 ORTHO05D007101 2.4e-23 112.5 125 53.6
Dinv31879 Davidia involucrata HOM05D001081 ORTHO05D007101 7.3e-20 100.9 76 75.0
SMO356G0374 Selaginella moellendorffii HOM05D001081 ORTHO05D007101 3.1e-18 95.5 88 56.8
Solyc12g042720.3 Solanum lycopersicum HOM05D001081 ORTHO05D007101 4.0e-18 95.1 82 64.6
Mapoly0012s0096 Marchantia polymorpha HOM05D001081 ORTHO05D007101 1.2e-17 93.6 103 52.4
Pp3c15_6340 Physcomitrium patens HOM05D001081 ORTHO05D007101 1.9e-15 86.3 89 56.2
Zm00001eb266390 Zea mays HOM05D001081 ORTHO05D007101 2.1e-14 82.8 110 51.8
arahy.Tifrunner.gnm1.ann1.EUX55C Arachis hypogaea HOM05D001081 ORTHO05D007101 2.7e-14 82.4 49 81.6
CSS0023065 Camellia sinensis var. sinensis HOM05D001081 ORTHO05D007101 5.1e-13 78.2 61 73.8
Gohir.A09G033580 Gossypium hirsutum HOM05D001081 ORTHO05D007101 6.6e-13 77.8 58 72.4
Gohir.D09G034100 Gossypium hirsutum HOM05D001081 ORTHO05D007101 3.3e-12 75.5 57 73.7
CSS0034162 Camellia sinensis var. sinensis HOM05D001081 ORTHO05D007101 2.1e-11 72.8 57 75.4
Nitab4.5_0001077g0030 Nicotiana tabacum HOM05D012963 ORTHO05D007101 4.0e-10 68.6 79 46.8
Actinidia15449 Actinidia chinensis HOM05D001081 ORTHO05D007101 5.2e-10 68.2 36 83.3
DCAR_016735 Daucus carota HOM05D001081 ORTHO05D007101 4.4e-09 65.1 59 47.5
Nitab4.5_0011266g0010 Nicotiana tabacum HOM05D002996 ORTHO05D025899 2.7e-06 55.8 64 53.1
Nitab4.5_0008435g0040 Nicotiana tabacum HOM05D002996 ORTHO05D025899 3.5e-06 55.5 64 53.1
CBR_g8977 Chara braunii HOM05D001081 ORTHO05D007101 4.6e-06 55.1 81 43.2


User provided reference genes

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