Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE11G0157 Ceratophyllum demersum HOM05D005527 ORTHO05D006480 4.5e-158 561.2 283 100.0
Dinv43641 Davidia involucrata HOM05D005527 ORTHO05D006480 1.1e-87 327.4 293 61.4
Actinidia12159 Actinidia chinensis HOM05D005527 ORTHO05D006480 1.6e-86 323.6 278 63.7
Actinidia40393 Actinidia chinensis HOM05D005527 ORTHO05D006480 3.5e-86 322.4 250 68.4
Nn6g33862 Nelumbo nucifera HOM05D005527 ORTHO05D006480 5.9e-86 321.6 274 62.8
Rhsim07G0034300 Rhododendron simsii HOM05D005527 ORTHO05D006480 6.6e-85 318.2 186 84.4
vmacro13481 Vaccinium macrocarpon HOM05D005527 ORTHO05D006480 1.9e-84 316.6 303 59.1
vmacro21047 Vaccinium macrocarpon HOM05D005527 ORTHO05D006480 7.3e-84 314.7 212 76.4
Lju41A43T28 Lonicera japonica HOM05D005527 ORTHO05D006480 9.5e-84 314.3 203 77.8
TAR375G0575 Trochodendron aralioides HOM05D005527 ORTHO05D006480 4.7e-83 312.0 254 63.4
GSVIVG01022807001 Vitis vinifera HOM05D005527 ORTHO05D006480 1.0e-82 310.8 273 61.2
PGSC0003DMG401012327 Solanum tuberosum HOM05D005527 ORTHO05D006480 8.9e-82 307.8 185 81.6
Nitab4.5_0001818g0050 Nicotiana tabacum HOM05D005527 ORTHO05D006480 1.5e-81 307.0 185 82.2
Hma1.2p1_1740F.1_g300050 Hydrangea macrophylla HOM05D005527 ORTHO05D006480 2.0e-81 306.6 250 64.8
Sopen08g029750 Solanum pennellii HOM05D005527 ORTHO05D006480 2.6e-81 306.2 185 81.6
CAN.G532.17 Capsicum annuum HOM05D005527 ORTHO05D006480 4.4e-81 305.4 185 81.1
CSS0037426 Camellia sinensis var. sinensis HOM05D005527 ORTHO05D006480 5.8e-81 305.1 186 79.6
MELO3C019920.2 Cucumis melo HOM05D005527 ORTHO05D006480 5.8e-81 305.1 186 78.5
CsaV3_6G004490 Cucumis sativus L. HOM05D005527 ORTHO05D006480 5.8e-81 305.1 186 78.5
Solyc08g081430.3 Solanum lycopersicum HOM05D005527 ORTHO05D006480 5.8e-81 305.1 185 81.1
Peaxi162Scf00392g00124 Petunia axillaris HOM05D005527 ORTHO05D006480 9.8e-81 304.3 185 81.1
MSTRG.4922 Avicennia marina HOM05D005527 ORTHO05D006480 1.1e-79 300.8 232 65.5
CANSAT01G0875 Cannabis sativa HOM05D005527 ORTHO05D006480 1.1e-79 300.8 232 65.9
CANSAT01G3075 Cannabis sativa HOM05D005527 ORTHO05D006480 1.1e-79 300.8 232 65.9
Nitab4.5_0002874g0100 Nicotiana tabacum HOM05D005527 ORTHO05D006480 1.1e-79 300.8 182 81.3
Oeu063991.1 Olea europaea HOM05D005527 ORTHO05D006480 1.4e-79 300.4 186 80.1
Sabra14G0040300 Salix brachista HOM05D005527 ORTHO05D006480 2.4e-79 299.7 231 67.1
Migut.N01756 Erythranthe guttata HOM05D005527 ORTHO05D006480 3.2e-79 299.3 186 78.5
Potri.014G054400 Populus trichocarpa HOM05D005527 ORTHO05D006480 4.1e-79 298.9 248 63.7
Ciclev10021461m.g Citrus clementina HOM05D005527 ORTHO05D006480 5.4e-79 298.5 298 58.4
Lsat_1_v5_gn_3_129561 Lactuca sativa HOM05D005527 ORTHO05D006480 2.0e-78 296.6 186 77.4
Potri.002G140700 Populus trichocarpa HOM05D005527 ORTHO05D006480 2.0e-78 296.6 185 78.4
SGA_v2.0_scaffold116G32305 Striga asiatica HOM05D005527 ORTHO05D006480 2.0e-78 296.6 187 76.5
Thecc.01G389600 Theobroma cacao HOM05D005527 ORTHO05D006480 3.5e-78 295.8 185 78.4
Eucgr.D01510 Eucalyptus grandis HOM05D005527 ORTHO05D006480 6.0e-78 295.0 285 59.3
TWI59G1399 Tripterygium wilfordii HOM05D005527 ORTHO05D006480 6.0e-78 295.0 294 57.1
CiPaw.03G272900 Carya illinoinensis HOM05D005527 ORTHO05D006480 7.8e-78 294.7 234 62.8
Prupe.8G211200 Prunus persica HOM05D005527 ORTHO05D006480 7.8e-78 294.7 254 58.3
HPP92_021019 Vanilla planifolia HOM05D005527 ORTHO05D006480 7.8e-78 294.7 195 75.9
MD10G1173000 Malus domestica HOM05D005527 ORTHO05D006480 1.0e-77 294.3 261 59.0
COL.COLO4_12437 Corchorus olitorius HOM05D005527 ORTHO05D006480 3.0e-77 292.7 185 76.8
DCAR_025077 Daucus carota HOM05D005527 ORTHO05D006480 3.0e-77 292.7 182 75.8
Cfa016649 Carpinus fangiana HOM05D002184 ORTHO05D006480 6.6e-77 291.6 196 70.9
Gohir.A08G059500 Gossypium hirsutum HOM05D005527 ORTHO05D006480 6.6e-77 291.6 294 55.4
MD05G1185000 Malus domestica HOM05D005527 ORTHO05D006480 8.6e-77 291.2 185 75.7
Duzib138G0956 Durio zibethinus HOM05D005527 ORTHO05D006480 1.1e-76 290.8 184 77.2
Cpa.g.sc5.224 Carica papaya HOM05D005527 ORTHO05D006480 1.5e-76 290.4 203 70.9
Manes.05G052500 Manihot esculenta HOM05D005527 ORTHO05D006480 2.5e-76 289.7 200 73.0
Gohir.D08G068700 Gossypium hirsutum HOM05D005527 ORTHO05D006480 4.3e-76 288.9 290 56.2
PGR004G2692 Punica granatum HOM05D005527 ORTHO05D006480 4.3e-76 288.9 236 63.6
Atru.chr10.1194 Acer truncatum HOM05D005527 ORTHO05D006480 7.3e-76 288.1 263 59.3
Duzib133G0823 Durio zibethinus HOM05D005527 ORTHO05D006480 7.3e-76 288.1 184 76.6
Gorai.004G072000 Gossypium raimondii HOM05D005527 ORTHO05D006480 7.3e-76 288.1 293 55.3
Thhalv10028875m.g Eutrema salsugineum HOM05D005527 ORTHO05D006480 9.5e-76 287.7 186 74.7
SGA_v2.0_scaffold44G16622 Striga asiatica HOM05D005527 ORTHO05D006480 9.5e-76 287.7 175 81.7
QL09p042955 Quercus lobata HOM05D005527 ORTHO05D006480 3.6e-75 285.8 212 63.2
SalBow5G2512 Salvia bowleyana HOM05D005527 ORTHO05D006480 3.6e-75 285.8 255 58.0
BcaB01g02205 Brassica carinata HOM05D005527 ORTHO05D006480 6.2e-75 285.0 186 74.2
C09p00040 Brassica napus HOM05D005527 ORTHO05D006480 6.2e-75 285.0 186 74.2
BraA09t35678Z Brassica rapa HOM05D005527 ORTHO05D006480 6.2e-75 285.0 186 74.2
SalBow5G5418 Salvia bowleyana HOM05D005527 ORTHO05D006480 6.2e-75 285.0 186 74.2
AUR62001190 Chenopodium quinoa HOM05D005527 ORTHO05D006480 8.0e-75 284.6 185 75.1
AUR62022137 Chenopodium quinoa HOM05D005527 ORTHO05D006480 8.0e-75 284.6 185 75.1
AT4G00026 Arabidopsis thaliana HOM05D005527 ORTHO05D006480 1.4e-74 283.9 186 73.7
Sabra02G0109800 Salix brachista HOM05D005527 ORTHO05D006480 1.8e-74 283.5 203 70.0
EL10Ac7g17978 Beta vulgaris HOM05D005527 ORTHO05D006480 2.3e-74 283.1 187 73.3
THA.LOC104814072 Tarenaya hassleriana HOM05D005527 ORTHO05D006480 2.3e-74 283.1 186 74.2
AL6G53490 Arabidopsis lyrata HOM05D005527 ORTHO05D006480 3.1e-74 282.7 186 73.1
CARHR248050 Cardamine hirsuta HOM05D005527 ORTHO05D006480 3.1e-74 282.7 186 73.7
Oeu018737.2 Olea europaea HOM05D005527 ORTHO05D006480 3.1e-74 282.7 255 60.4
arahy.Tifrunner.gnm1.ann1.TVCQ13 Arachis hypogaea HOM05D005527 ORTHO05D006480 4.0e-74 282.3 191 69.6
Rhsim01G0137400 Rhododendron simsii HOM05D005527 ORTHO05D006480 4.0e-74 282.3 223 65.9
Phvul.L007001 Phaseolus vulgaris HOM05D005527 ORTHO05D006480 5.2e-74 282.0 187 72.2
BolC9t52939H Brassica oleracea HOM05D005527 ORTHO05D006480 6.8e-74 281.6 186 73.7
Carub.0006s3720 Capsella rubella HOM05D005527 ORTHO05D006480 6.8e-74 281.6 186 73.7
Sed0026275 Sechium edule HOM05D005527 ORTHO05D006480 8.9e-74 281.2 189 70.9
BcaB01g02184 Brassica carinata HOM05D005527 ORTHO05D006480 1.2e-73 280.8 185 74.6
ATR0767G019 Amborella trichopoda HOM05D005527 ORTHO05D006480 1.5e-73 280.4 170 79.4
VMungo0720G0088 Vigna mungo HOM05D005527 ORTHO05D006480 9.8e-73 277.7 225 63.6
Ah.08g218760 Amaranthus hybridus HOM05D005527 ORTHO05D006480 1.3e-72 277.3 186 72.0
Dinv44079 Davidia involucrata HOM05D005527 ORTHO05D006480 1.3e-72 277.3 190 75.3
Ca_09921_v3 Cicer arietinum L. HOM05D005527 ORTHO05D006480 2.2e-72 276.6 185 73.5
arahy.Tifrunner.gnm1.ann1.PVA962 Arachis hypogaea HOM05D005527 ORTHO05D006480 3.7e-72 275.8 167 74.9
unitig_0.g2761 Utricularia gibba HOM05D005527 ORTHO05D006480 3.7e-72 275.8 184 71.7
Glyma.20G215800 Glycine max HOM05D005527 ORTHO05D006480 6.4e-72 275.0 191 70.7
Cc00_g20470 Coffea canephora HOM05D005527 ORTHO05D006480 1.9e-71 273.5 267 56.9
ECA240G4071 Erigeron canadensis HOM05D005527 ORTHO05D006480 1.9e-71 273.5 187 71.7
Zm00001eb010980 Zea mays HOM05D005527 ORTHO05D006480 5.4e-71 271.9 231 64.1
Lalb_Chr21g0311731 Lupinus albus HOM05D005527 ORTHO05D006480 7.0e-71 271.6 181 73.5
ClCG08G008500 Citrullus lanatus HOM05D005527 ORTHO05D006480 9.2e-71 271.2 202 68.3
Lalb_Chr02g0149681 Lupinus albus HOM05D005527 ORTHO05D006480 9.2e-71 271.2 184 71.7
C08p29870 Brassica napus HOM05D005527 ORTHO05D006480 1.6e-70 270.4 184 71.7
RcHm_v2.0_Chr6g0285911 Rosa chinensis HOM05D005527 ORTHO05D006480 2.7e-70 269.6 185 69.2
A09p47660 Brassica napus HOM05D005527 ORTHO05D006480 4.6e-70 268.9 269 56.1
Glyma.10G175000 Glycine max HOM05D005527 ORTHO05D006480 4.6e-70 268.9 186 69.9
PSO063G6553 Papaver somniferum HOM05D005527 ORTHO05D006480 4.6e-70 268.9 205 67.3
BraA09t40222Z Brassica rapa HOM05D005527 ORTHO05D006480 2.3e-69 266.5 261 57.1
Psat6g111240 Pisum sativum HOM05D005527 ORTHO05D006480 5.0e-69 265.4 183 69.4
Lj5g0022618 Lotus japonicus HOM05D005527 ORTHO05D006480 8.6e-69 264.6 168 75.6
Medtr1g077430 Medicago truncatula HOM05D005527 ORTHO05D006480 1.9e-68 263.5 183 71.6
FAN06G1845 Fragaria x ananassa HOM05D004480 ORTHO05D005546 7.3e-68 261.5 230 58.7
SMO201G0136 Selaginella moellendorffii HOM05D005527 ORTHO05D006480 1.2e-67 260.8 160 76.9
TPR.G8872 Trifolium pratense HOM05D005527 ORTHO05D006480 1.6e-67 260.4 183 72.1
FvH4_7g06430 Fragaria vesca HOM05D005527 ORTHO05D006480 2.1e-67 260.0 230 58.3
FAN10G1488 Fragaria x ananassa HOM05D004480 ORTHO05D005546 2.1e-67 260.0 230 58.3
FAN01G2831 Fragaria x ananassa HOM05D005527 ORTHO05D006480 3.6e-67 259.2 185 68.1
SHI13602 Sapria himalayana HOM05D005527 ORTHO05D006480 1.1e-66 257.7 196 64.8
Aa31LG5G80 Aethionema arabicum HOM05D005527 ORTHO05D006480 3.1e-66 256.1 186 69.9
Sp6g00070 Schrenkiella parvula HOM05D005527 ORTHO05D006480 6.8e-66 255.0 266 55.3
AagrBONN_evm.TU.Sc2ySwM_117.1379 Anthoceros agrestis HOM05D005527 ORTHO05D006480 2.0e-65 253.4 160 76.2
FAN03G2170 Fragaria x ananassa HOM05D005527 ORTHO05D006480 8.3e-64 248.1 254 53.1
Mapoly0168s0006 Marchantia polymorpha HOM05D005527 ORTHO05D006480 3.5e-62 242.7 188 63.8
Pp3c2_16760 Physcomitrium patens HOM05D005527 ORTHO05D006480 1.2e-59 234.2 198 63.1
Aqoxy3G02804 Aquilegia oxysepala HOM05D000030 ORTHO05D000023 2.1e-59 233.4 191 64.9
Nn1g00907 Nelumbo nucifera HOM05D005527 ORTHO05D006480 8.1e-59 231.5 134 82.8
CBR_g6321 Chara braunii HOM05D005527 ORTHO05D000048 2.7e-54 216.5 174 60.3
BolC8t50598H Brassica oleracea HOM05D005527 ORTHO05D006480 3.5e-54 216.1 146 73.3
DCAR_025031 Daucus carota HOM05D005527 ORTHO05D006480 6.6e-53 211.8 134 75.4
HanXRQChr13g0422791 Helianthus annuus HOM05D005527 ORTHO05D006480 1.5e-52 210.7 134 77.6
BcaC07g39791 Brassica carinata HOM05D005527 ORTHO05D006480 3.3e-52 209.5 156 68.6
Hund14311 Selenicereus undatus HOM05D005527 ORTHO05D006480 5.6e-52 208.8 138 73.9
BcaB02g08455 Brassica carinata HOM05D005527 ORTHO05D006480 4.4e-49 199.1 156 67.3
SEGI_20492 Sequoiadendron giganteum HOM05D005527 ORTHO05D006480 4.4e-49 199.1 118 80.5
CSS0049638 Camellia sinensis var. sinensis HOM05D005527 ORTHO05D006480 7.6e-49 198.4 109 86.2
Oeu018739.1 Olea europaea HOM05D005527 ORTHO05D006480 2.7e-38 163.3 93 81.7
FAN23G2762 Fragaria x ananassa HOM05D005527 ORTHO05D006480 1.1e-34 151.4 250 37.6
FAN19G1210 Fragaria x ananassa HOM05D005527 ORTHO05D006480 3.8e-32 142.9 224 41.1
Haze_19655 Corylus avellana HOM05D002184 ORTHO05D002379 9.3e-31 138.3 92 67.4
CANSAT01G1020 Cannabis sativa HOM05D001299 ORTHO05D001985 3.3e-28 129.8 141 52.5
Cre09.g405550 Chlamydomonas reinhardtii HOM05D005527 ORTHO05D006480 6.2e-27 125.6 156 40.4
A09p00830 Brassica napus HOM05D005527 ORTHO05D006480 1.4e-26 124.4 98 67.3
MCO09G641 Micromonas commoda HOM05D005527 ORTHO05D006480 1.4e-26 124.4 133 46.6
PRCOL_00001529 Prasinoderma coloniale HOM05D005527 ORTHO05D006480 9.0e-26 121.7 137 46.7
Sc14g0006170 Simmondsia chinensis HOM05D005527 ORTHO05D006480 7.6e-25 118.6 94 67.0
CSS0044998 Camellia sinensis var. sinensis HOM05D005527 ORTHO05D006480 2.2e-24 117.1 117 59.0
CSS0016661 Camellia sinensis var. sinensis HOM05D005527 ORTHO05D006480 6.5e-24 115.5 152 50.7
Os03g0253800 Oryza sativa ssp. japonica HOM05D005527 ORTHO05D006480 2.3e-21 107.1 79 67.1
ECA240G0336 Erigeron canadensis HOM05D002424 ORTHO05D002640 9.4e-15 85.1 85 56.5
FAN28G0427 Fragaria x ananassa HOM05D005527 ORTHO05D006480 1.4e-13 81.3 174 33.9
Glyma.06G247300 Glycine max HOM05D006695 ORTHO05D008239 5.3e-10 69.3 43 72.1
Glyma.08G276700 Glycine max HOM05D005527 ORTHO05D006480 1.1e-07 61.6 38 73.7
HanXRQChr11g0351331 Helianthus annuus HOM05D005527 ORTHO05D006480 9.4e-07 58.5 56 55.4
FvH4_1g24250 Fragaria vesca HOM05D017060 ORTHO05D046490 3.6e-06 56.6 108 38.9


User provided reference genes

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