Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE11G0113 Ceratophyllum demersum HOM05D004916 ORTHO05D006147 7.8e-143 510.4 246 100.0
MBI18_g03855_MAGBIO Magnolia biondii HOM05D004916 ORTHO05D006147 7.1e-27 125.2 132 51.5
PSO210G3767 Papaver somniferum HOM05D004916 ORTHO05D006147 9.3e-27 124.8 174 43.7
PSO761G0152 Papaver somniferum HOM05D004916 ORTHO05D006147 9.3e-27 124.8 174 43.7
TAR636G0286 Trochodendron aralioides HOM05D004916 ORTHO05D006147 3.9e-25 119.4 244 38.1
TAR362G0057 Trochodendron aralioides HOM05D004916 ORTHO05D006147 5.1e-25 119.0 194 41.8
TAR362G0875 Trochodendron aralioides HOM05D004916 ORTHO05D006147 5.1e-25 119.0 194 41.8
Sabra14G0081700 Salix brachista HOM05D004916 ORTHO05D006147 1.5e-24 117.5 271 36.9
TAR553G0002 Trochodendron aralioides HOM05D004916 ORTHO05D006147 9.6e-24 114.8 269 34.9
Duzib138G0475 Durio zibethinus HOM05D004916 ORTHO05D006147 1.3e-23 114.4 238 37.8
TAR365G1046 Trochodendron aralioides HOM05D004916 ORTHO05D006147 1.6e-23 114.0 275 34.9
Potri.014G111000 Populus trichocarpa HOM05D004916 ORTHO05D006147 2.1e-23 113.6 268 34.7
THA.LOC104825924 Tarenaya hassleriana HOM05D004916 ORTHO05D006147 2.8e-23 113.2 170 44.1
Lalb_Chr18g0046341 Lupinus albus HOM05D004916 ORTHO05D006147 4.8e-23 112.5 182 40.7
Ciclev10021551m.g Citrus clementina HOM05D004916 ORTHO05D006147 8.1e-23 111.7 178 41.0
Gohir.A12G119000 Gossypium hirsutum HOM05D004916 ORTHO05D006147 1.1e-22 111.3 197 40.1
Manes.05G007300 Manihot esculenta HOM05D004916 ORTHO05D006147 1.8e-22 110.5 205 38.5
Duzib133G0180 Durio zibethinus HOM05D004916 ORTHO05D006147 2.4e-22 110.2 224 39.7
Gohir.D12G122800 Gossypium hirsutum HOM05D004916 ORTHO05D006147 2.4e-22 110.2 197 39.6
Gorai.008G133600 Gossypium raimondii HOM05D004916 ORTHO05D006147 2.4e-22 110.2 197 39.6
Cfa004923 Carpinus fangiana HOM05D004916 ORTHO05D006147 4.0e-22 109.4 219 38.4
Gorai.007G118300 Gossypium raimondii HOM05D004916 ORTHO05D006147 9.0e-22 108.2 190 40.0
Gohir.A11G105700 Gossypium hirsutum HOM05D004916 ORTHO05D006147 1.5e-21 107.5 190 40.5
Phvul.001G219100 Phaseolus vulgaris HOM05D004916 ORTHO05D006147 1.5e-21 107.5 193 38.9
TWI23G0103 Tripterygium wilfordii HOM05D004916 ORTHO05D006147 1.5e-21 107.5 178 41.6
CSS0009622 Camellia sinensis var. sinensis HOM05D004916 ORTHO05D006147 2.0e-21 107.1 98 57.1
COL.COLO4_23106 Corchorus olitorius HOM05D004916 ORTHO05D006147 2.0e-21 107.1 200 39.0
Lalb_Chr15g0077851 Lupinus albus HOM05D004916 ORTHO05D006147 2.0e-21 107.1 92 59.8
Gohir.A07G132300 Gossypium hirsutum HOM05D004916 ORTHO05D006147 2.6e-21 106.7 214 37.4
Gohir.D07G136500 Gossypium hirsutum HOM05D004916 ORTHO05D006147 2.6e-21 106.7 217 37.3
Gohir.D11G110600 Gossypium hirsutum HOM05D004916 ORTHO05D006147 4.5e-21 105.9 240 37.5
CARHR250000 Cardamine hirsuta HOM05D004916 ORTHO05D006147 7.6e-21 105.1 208 38.5
Manes.01G235900 Manihot esculenta HOM05D004916 ORTHO05D006147 7.6e-21 105.1 212 37.7
QL12p035219 Quercus lobata HOM05D004916 ORTHO05D006147 7.6e-21 105.1 215 36.3
Thecc.01G327100 Theobroma cacao HOM05D004916 ORTHO05D006147 7.6e-21 105.1 225 37.3
TAR633G1842 Trochodendron aralioides HOM05D004916 ORTHO05D006147 7.6e-21 105.1 245 35.5
CiPaw.07G126700 Carya illinoinensis HOM05D004916 ORTHO05D006147 9.9e-21 104.8 228 36.8
Gorai.001G148600 Gossypium raimondii HOM05D004916 ORTHO05D006147 9.9e-21 104.8 259 34.7
GSVIVG01028232001 Vitis vinifera HOM05D004916 ORTHO05D006147 9.9e-21 104.8 94 58.5
CSS0004254 Camellia sinensis var. sinensis HOM05D004916 ORTHO05D006147 1.3e-20 104.4 98 56.1
Glyma.03G225300 Glycine max HOM05D004916 ORTHO05D006147 1.3e-20 104.4 169 39.6
TWI14G0993 Tripterygium wilfordii HOM05D004916 ORTHO05D006147 1.3e-20 104.4 215 37.7
Nn4g25313 Nelumbo nucifera HOM05D004916 ORTHO05D006147 1.7e-20 104.0 220 36.8
PSO357G0289 Papaver somniferum HOM05D004916 ORTHO05D006147 1.7e-20 104.0 223 35.0
Prupe.3G001400 Prunus persica HOM05D004916 ORTHO05D006147 1.7e-20 104.0 200 39.0
THA.LOC104815913 Tarenaya hassleriana HOM05D004916 ORTHO05D006147 1.7e-20 104.0 90 60.0
TPR.G8393 Trifolium pratense HOM05D004916 ORTHO05D006147 1.7e-20 104.0 213 35.7
Cpa.g.sc57.33 Carica papaya HOM05D004916 ORTHO05D006147 2.2e-20 103.6 199 37.7
Haze_05162 Corylus avellana HOM05D004916 ORTHO05D006147 2.2e-20 103.6 262 34.0
Thhalv10028918m.g Eutrema salsugineum HOM05D004916 ORTHO05D006147 2.9e-20 103.2 184 40.8
PSO170G5346 Papaver somniferum HOM05D004916 ORTHO05D006147 2.9e-20 103.2 223 34.5
Carub.0006s3554 Capsella rubella HOM05D004916 ORTHO05D006147 4.9e-20 102.4 205 38.0
CiPaw.08G082200 Carya illinoinensis HOM05D004916 ORTHO05D006147 4.9e-20 102.4 91 57.1
Eucgr.A00995 Eucalyptus grandis HOM05D004916 ORTHO05D006147 4.9e-20 102.4 208 37.0
Medtr7g110880 Medicago truncatula HOM05D004916 ORTHO05D006147 6.4e-20 102.1 184 38.6
Psat3g016360 Pisum sativum HOM05D004916 ORTHO05D006147 8.4e-20 101.7 253 32.0
Potri.002G185700 Populus trichocarpa HOM05D004916 ORTHO05D006147 8.4e-20 101.7 272 33.5
AT4G01670 Arabidopsis thaliana HOM05D004916 ORTHO05D006147 1.1e-19 101.3 110 53.6
Lj1g0011620 Lotus japonicus HOM05D004916 ORTHO05D006147 1.4e-19 100.9 231 33.8
PGR042G3904 Punica granatum HOM05D004916 ORTHO05D006147 1.4e-19 100.9 250 35.6
MD00G1137300 Malus domestica HOM05D004916 ORTHO05D006147 2.4e-19 100.1 102 52.9
Ca_09253_v3 Cicer arietinum L. HOM05D004916 ORTHO05D006147 4.2e-19 99.4 186 38.2
MBI18_g28911_MAGBIO Magnolia biondii HOM05D004916 ORTHO05D006147 5.4e-19 99.0 123 44.7
Aqoxy5G02859 Aquilegia oxysepala HOM05D004916 ORTHO05D006147 9.3e-19 98.2 206 35.9
Sp5g01300 Schrenkiella parvula HOM05D004916 ORTHO05D006147 1.2e-18 97.8 239 35.6
Glyma.19G222300 Glycine max HOM05D004916 ORTHO05D006147 1.6e-18 97.4 219 36.1
Sp6g01560 Schrenkiella parvula HOM05D004916 ORTHO05D006147 1.6e-18 97.4 146 44.5
FAN26G2369 Fragaria x ananassa HOM05D004916 ORTHO05D006147 2.7e-18 96.7 101 51.5
DCAR_002943 Daucus carota HOM05D004916 ORTHO05D006147 3.5e-18 96.3 184 37.0
Atru.chr5.842 Acer truncatum HOM05D004916 ORTHO05D006147 4.6e-18 95.9 188 35.1
BcaC01g06807 Brassica carinata HOM05D004916 ORTHO05D006147 4.6e-18 95.9 89 57.3
BolC3t16124H Brassica oleracea HOM05D004916 ORTHO05D006147 4.6e-18 95.9 89 57.3
Carub.0004s2967 Capsella rubella HOM05D004916 ORTHO05D006147 4.6e-18 95.9 228 36.4
FAN28G2008 Fragaria x ananassa HOM05D004916 ORTHO05D006147 6.0e-18 95.5 101 50.5
Sabra02G0148800 Salix brachista HOM05D004916 ORTHO05D006147 6.0e-18 95.5 254 35.0
VMungo1383G1740 Vigna mungo HOM05D004916 ORTHO05D006147 6.0e-18 95.5 191 36.1
AL6G51680 Arabidopsis lyrata HOM05D004916 ORTHO05D006147 7.9e-18 95.1 84 59.5
BcaB01g02376 Brassica carinata HOM05D004916 ORTHO05D006147 7.9e-18 95.1 223 35.4
BcaB01g03195 Brassica carinata HOM05D004916 ORTHO05D006147 7.9e-18 95.1 91 53.8
BcaB01g03196 Brassica carinata HOM05D004916 ORTHO05D006147 7.9e-18 95.1 91 53.8
BraA03t11793Z Brassica rapa HOM05D004916 ORTHO05D006147 7.9e-18 95.1 151 40.4
Thhalv10006193m.g Eutrema salsugineum HOM05D004916 ORTHO05D006147 7.9e-18 95.1 120 45.8
FAN23G1874 Fragaria x ananassa HOM05D004916 ORTHO05D006147 7.9e-18 95.1 102 50.0
FvH4_1g26130 Fragaria vesca HOM05D004916 ORTHO05D006147 1.0e-17 94.7 101 46.5
FAN19G1053 Fragaria x ananassa HOM05D004916 ORTHO05D006147 1.0e-17 94.7 101 46.5
A09p54150 Brassica napus HOM05D004916 ORTHO05D006147 1.3e-17 94.4 87 56.3
BraA09t40829Z Brassica rapa HOM05D004916 ORTHO05D006147 1.3e-17 94.4 87 56.3
Aa31LG10G16040 Aethionema arabicum HOM05D004916 ORTHO05D006147 1.8e-17 94.0 126 47.6
arahy.Tifrunner.gnm1.ann1.Y1689U Arachis hypogaea HOM05D004916 ORTHO05D006147 1.8e-17 94.0 86 57.0
BcaC04g24078 Brassica carinata HOM05D004916 ORTHO05D006147 1.8e-17 94.0 89 59.6
BolC9t53063H Brassica oleracea HOM05D004916 ORTHO05D006147 1.8e-17 94.0 89 59.6
RcHm_v2.0_Chr3g0485631 Rosa chinensis HOM05D004916 ORTHO05D006147 2.3e-17 93.6 102 46.1
Aa31LG5G1380 Aethionema arabicum HOM05D004916 ORTHO05D006147 3.0e-17 93.2 110 50.9
BolC8t51280H Brassica oleracea HOM05D004916 ORTHO05D006147 3.0e-17 93.2 87 55.2
CANSAT25G0633 Cannabis sativa HOM05D004916 ORTHO05D006147 3.9e-17 92.8 139 43.9
AL4G46410 Arabidopsis lyrata HOM05D004916 ORTHO05D006147 5.1e-17 92.4 198 38.4
Thhalv10001588m.g Eutrema salsugineum HOM05D004916 ORTHO05D006147 5.1e-17 92.4 90 54.4
DCAR_005711 Daucus carota HOM05D004916 ORTHO05D006147 6.7e-17 92.0 197 36.0
BcaC07g40699 Brassica carinata HOM05D004916 ORTHO05D006147 8.7e-17 91.7 87 55.2
A03p31520 Brassica napus HOM05D004916 ORTHO05D006147 8.7e-17 91.7 223 34.5
C08p37030 Brassica napus HOM05D004916 ORTHO05D006147 8.7e-17 91.7 87 55.2
BraA03t12331Z Brassica rapa HOM05D004916 ORTHO05D006147 8.7e-17 91.7 223 34.5
A03p25790 Brassica napus HOM05D004916 ORTHO05D006147 1.1e-16 91.3 225 34.2
Carub.0005s2882 Capsella rubella HOM05D004916 ORTHO05D006147 1.1e-16 91.3 110 47.3
BcaC02g12821 Brassica carinata HOM05D004916 ORTHO05D006147 1.9e-16 90.5 106 49.1
C03p38500 Brassica napus HOM05D004916 ORTHO05D006147 2.5e-16 90.1 225 34.7
BcaC02g12625 Brassica carinata HOM05D004916 ORTHO05D006147 3.3e-16 89.7 91 51.6
C04p01040 Brassica napus HOM05D004916 ORTHO05D006147 3.3e-16 89.7 91 51.6
BolC4t21757H Brassica oleracea HOM05D004916 ORTHO05D006147 3.3e-16 89.7 91 51.6
A09p01200 Brassica napus HOM05D004916 ORTHO05D006147 5.6e-16 89.0 226 37.2
BraA09t35790Z Brassica rapa HOM05D004916 ORTHO05D006147 5.6e-16 89.0 226 37.2
BcaC01g05053 Brassica carinata HOM05D004916 ORTHO05D006147 7.4e-16 88.6 227 33.5
C03p30740 Brassica napus HOM05D004916 ORTHO05D006147 7.4e-16 88.6 227 33.5
BolC3t15423H Brassica oleracea HOM05D004916 ORTHO05D006147 7.4e-16 88.6 227 33.5
Lj5g0005115 Lotus japonicus HOM05D004916 ORTHO05D006147 7.4e-16 88.6 210 32.4
AL5G44750 Arabidopsis lyrata HOM05D004916 ORTHO05D006147 1.3e-15 87.8 147 40.8
A05p00890 Brassica napus HOM05D004916 ORTHO05D006147 1.3e-15 87.8 91 51.6
BraA05t19090Z Brassica rapa HOM05D004916 ORTHO05D006147 1.3e-15 87.8 91 51.6
CARHR142290 Cardamine hirsuta HOM05D004916 ORTHO05D006147 1.3e-15 87.8 87 54.0
HPP92_012762 Vanilla planifolia HOM05D004916 ORTHO05D006147 1.6e-15 87.4 209 33.0
ATR0796G037 Amborella trichopoda HOM05D004916 ORTHO05D006147 2.1e-15 87.0 146 41.1
Os01g0284900 Oryza sativa ssp. japonica HOM05D004916 ORTHO05D006147 2.1e-15 87.0 153 39.9
AT3G62070 Arabidopsis thaliana HOM05D004916 ORTHO05D006147 3.6e-15 86.3 142 42.3
C09p01290 Brassica napus HOM05D004916 ORTHO05D006147 3.6e-15 86.3 228 36.0
AT2G46940 Arabidopsis thaliana HOM05D004916 ORTHO05D006147 4.8e-15 85.9 89 55.1
THA.LOC104827649 Tarenaya hassleriana HOM05D004916 ORTHO05D006147 4.8e-15 85.9 198 34.8
Phvul.007G208300 Phaseolus vulgaris HOM05D004916 ORTHO05D006147 1.8e-14 84.0 145 37.9
Glyma.02G006700 Glycine max HOM05D004916 ORTHO05D006147 5.3e-14 82.4 78 55.1
BcaC02g09022 Brassica carinata HOM05D004916 ORTHO05D006147 5.8e-13 79.0 87 48.3
BcaC02g12602 Brassica carinata HOM05D004916 ORTHO05D006147 7.6e-13 78.6 87 47.1
Zm00001eb129480 Zea mays HOM05D004916 ORTHO05D006147 2.9e-12 76.6 130 39.2
A03p24190 Brassica napus HOM05D000925 ORTHO05D001623 7.9e-10 68.6 176 34.7
Zm00001eb354450 Zea mays HOM05D004916 ORTHO05D037121 7.9e-10 68.6 145 39.3
Zm00001eb417630 Zea mays HOM05D004916 ORTHO05D037121 1.1e-08 64.7 82 48.8
Actinidia25874 Actinidia chinensis HOM05D004916 ORTHO05D006147 2.5e-08 63.5 102 42.2
FvH4_4g11250 Fragaria vesca HOM05D000925 ORTHO05D001623 5.6e-08 62.4 77 48.1
Gohir.A08G121950 Gossypium hirsutum HOM05D004916 ORTHO05D006147 5.6e-08 62.4 245 29.0
Medtr1g116590 Medicago truncatula HOM05D000925 ORTHO05D001623 5.6e-08 62.4 69 49.3
Oeu006545.1 Olea europaea HOM05D004916 ORTHO05D006147 5.6e-08 62.4 74 51.4
CiPaw.01G102100 Carya illinoinensis HOM05D000925 ORTHO05D001623 7.4e-08 62.0 139 36.7
FAN07G0453 Fragaria x ananassa HOM05D000925 ORTHO05D001623 7.4e-08 62.0 116 38.8
Gorai.004G147700 Gossypium raimondii HOM05D004916 ORTHO05D006147 1.3e-07 61.2 266 29.7
Atru.chr3.1556 Acer truncatum HOM05D000925 ORTHO05D001623 1.6e-07 60.8 80 47.5
Atru.chr3.1577 Acer truncatum HOM05D000925 ORTHO05D001623 1.6e-07 60.8 80 47.5
Peaxi162Scf00375g00616 Petunia axillaris HOM05D000925 ORTHO05D001623 1.6e-07 60.8 157 33.8
Sed0003267 Sechium edule HOM05D000925 ORTHO05D001623 1.6e-07 60.8 135 37.0
arahy.Tifrunner.gnm1.ann1.GVI4HJ Arachis hypogaea HOM05D004916 ORTHO05D006147 2.1e-07 60.5 73 45.2
FAN22G0631 Fragaria x ananassa HOM05D000925 ORTHO05D001623 2.1e-07 60.5 80 46.2
BcaC01g05238 Brassica carinata HOM05D000925 ORTHO05D001623 2.8e-07 60.1 176 33.5
BolC3t15242H Brassica oleracea HOM05D000925 ORTHO05D001623 2.8e-07 60.1 176 33.5
Rhsim09G0029700 Rhododendron simsii HOM05D000925 ORTHO05D001623 3.7e-07 59.7 85 44.7
arahy.Tifrunner.gnm1.ann1.AINH12 Arachis hypogaea HOM05D000925 ORTHO05D001623 8.1e-07 58.5 86 43.0
arahy.Tifrunner.gnm1.ann1.SD34JU Arachis hypogaea HOM05D000925 ORTHO05D001623 8.1e-07 58.5 86 43.0
BraA03t11628Z Brassica rapa HOM05D000925 ORTHO05D001623 8.1e-07 58.5 138 36.2
CDE02G0100 Ceratophyllum demersum HOM05D000925 ORTHO05D001623 8.1e-07 58.5 77 45.5
PGSC0003DMG400027006 Solanum tuberosum HOM05D000925 ORTHO05D001623 8.1e-07 58.5 177 32.8
C03p28830 Brassica napus HOM05D000925 ORTHO05D001623 1.1e-06 58.2 176 33.0
Cfa015766 Carpinus fangiana HOM05D008684 ORTHO05D010796 1.1e-06 58.2 152 33.6
Cpa.g.sc71.14 Carica papaya HOM05D000925 ORTHO05D001623 1.4e-06 57.8 88 44.3
CAN.G65.186 Capsicum annuum HOM05D000925 ORTHO05D001623 1.8e-06 57.4 133 36.8
Lalb_Chr02g0144341 Lupinus albus HOM05D000925 ORTHO05D001623 1.8e-06 57.4 116 37.9
Solyc06g073450.4 Solanum lycopersicum HOM05D000925 ORTHO05D001623 1.8e-06 57.4 133 36.8
Sopen06g029810 Solanum pennellii HOM05D000925 ORTHO05D001623 1.8e-06 57.4 133 36.8
Nitab4.5_0002368g0040 Nicotiana tabacum HOM05D000925 ORTHO05D001623 2.4e-06 57.0 89 41.6
Nitab4.5_0004579g0030 Nicotiana tabacum HOM05D000925 ORTHO05D001623 2.4e-06 57.0 89 41.6
Ca_11406_v3 Cicer arietinum L. HOM05D000925 ORTHO05D001623 4.0e-06 56.2 73 45.2
Lj5g0008666 Lotus japonicus HOM05D000925 ORTHO05D001623 4.0e-06 56.2 118 36.4
ECA248G0605 Erigeron canadensis HOM05D000925 ORTHO05D001623 5.3e-06 55.8 90 41.1
Manes.04G041140 Manihot esculenta HOM05D000925 ORTHO05D001623 5.3e-06 55.8 90 42.2
Hma1.2p1_0754F.1_g213120 Hydrangea macrophylla HOM05D000925 ORTHO05D001623 6.9e-06 55.5 87 43.7
Prupe.1G189800 Prunus persica HOM05D000925 ORTHO05D001623 9.0e-06 55.1 143 35.0
HPP92_023708 Vanilla planifolia HOM05D000925 ORTHO05D001623 9.0e-06 55.1 153 34.0


User provided reference genes

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