Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE10G1324 Ceratophyllum demersum HOM05D004435 ORTHO05D005103 0.0e+00 4779.9 2365 100.0
MBI06_g44136_MAGBIO Magnolia biondii HOM05D004435 ORTHO05D005103 0.0e+00 1906.0 2596 43.0
Dinv34221 Davidia involucrata HOM05D004435 ORTHO05D005103 0.0e+00 1768.4 2593 41.0
Atru.chr5.694 Acer truncatum HOM05D004435 ORTHO05D005103 0.0e+00 1755.0 2594 40.9
CSS0028718 Camellia sinensis var. sinensis HOM05D004435 ORTHO05D005103 0.0e+00 1746.9 2602 40.5
Duzib133G0905 Durio zibethinus HOM05D004435 ORTHO05D005103 0.0e+00 1743.8 2585 40.7
Nn1g00298 Nelumbo nucifera HOM05D004435 ORTHO05D005103 0.0e+00 1717.2 2622 39.9
Cfa003785 Carpinus fangiana HOM05D004435 ORTHO05D005103 0.0e+00 1714.5 2595 40.0
Rhsim07G0003000 Rhododendron simsii HOM05D004435 ORTHO05D005103 0.0e+00 1704.9 2569 39.9
RcHm_v2.0_Chr1g0360111 Rosa chinensis HOM05D004435 ORTHO05D005103 0.0e+00 1704.5 2584 40.0
CiPaw.01G077800 Carya illinoinensis HOM05D004435 ORTHO05D005103 0.0e+00 1699.1 2593 39.8
MD01G1083800 Malus domestica HOM05D004435 ORTHO05D005103 0.0e+00 1698.3 2598 39.8
QL08p045721 Quercus lobata HOM05D004435 ORTHO05D005103 0.0e+00 1696.0 2656 39.2
PSO384G1989 Papaver somniferum HOM05D004435 ORTHO05D005103 0.0e+00 1693.3 2560 40.0
FvH4_7g16880 Fragaria vesca HOM05D004435 ORTHO05D005103 0.0e+00 1684.1 2591 39.6
Gorai.007G109900 Gossypium raimondii HOM05D004435 ORTHO05D005103 0.0e+00 1680.6 2590 39.7
Gohir.A11G098100 Gossypium hirsutum HOM05D004435 ORTHO05D005103 0.0e+00 1680.2 2593 39.4
FAN06G0620 Fragaria x ananassa HOM05D004435 ORTHO05D005103 0.0e+00 1677.5 2591 39.6
PSO135G0708 Papaver somniferum HOM05D004435 ORTHO05D005103 0.0e+00 1677.5 2563 39.9
Gohir.D11G102800 Gossypium hirsutum HOM05D004435 ORTHO05D005103 0.0e+00 1675.6 2590 39.6
Actinidia20252 Actinidia chinensis HOM05D004435 ORTHO05D005103 0.0e+00 1671.0 2543 39.6
COL.COLO4_06228 Corchorus olitorius HOM05D004435 ORTHO05D005103 0.0e+00 1668.7 2584 39.1
FAN03G2945 Fragaria x ananassa HOM05D004435 ORTHO05D005103 0.0e+00 1666.0 2596 39.2
FAN06G2443 Fragaria x ananassa HOM05D004435 ORTHO05D005103 0.0e+00 1665.2 2591 39.5
vmacro04283 Vaccinium macrocarpon HOM05D004435 ORTHO05D005103 0.0e+00 1659.0 2633 39.2
FAN10G0386 Fragaria x ananassa HOM05D004435 ORTHO05D005103 0.0e+00 1657.1 2592 39.3
FAN10G3841 Fragaria x ananassa HOM05D004435 ORTHO05D005103 0.0e+00 1657.1 2592 39.3
Aqoxy1G03073 Aquilegia oxysepala HOM05D004435 ORTHO05D005103 0.0e+00 1651.0 2588 38.9
Manes.01G244500 Manihot esculenta HOM05D004435 ORTHO05D005103 0.0e+00 1647.5 2558 38.7
ClCG05G000720 Citrullus lanatus HOM05D004435 ORTHO05D005103 0.0e+00 1642.1 2525 38.6
Ciclev10018429m.g Citrus clementina HOM05D004435 ORTHO05D005103 0.0e+00 1641.7 2581 38.7
Potri.002G173300 Populus trichocarpa HOM05D004435 ORTHO05D005103 0.0e+00 1636.3 2613 38.9
CANSAT56G0169 Cannabis sativa HOM05D004435 ORTHO05D005103 0.0e+00 1629.8 2608 38.6
Sabra02G0140000 Salix brachista HOM05D004435 ORTHO05D005103 0.0e+00 1624.0 2607 38.6
Glyma.07G054500 Glycine max HOM05D004435 ORTHO05D005103 0.0e+00 1615.9 2582 38.1
MELO3C006012.2 Cucumis melo HOM05D004435 ORTHO05D005103 0.0e+00 1610.9 2563 37.9
CsaV3_3G007940 Cucumis sativus L. HOM05D004435 ORTHO05D005103 0.0e+00 1605.9 2551 38.2
Medtr8g027425 Medicago truncatula HOM05D004435 ORTHO05D005103 0.0e+00 1592.0 2567 38.3
Lalb_Chr10g0100641 Lupinus albus HOM05D004435 ORTHO05D005103 0.0e+00 1585.5 2591 37.6
Prupe.2G190800 Prunus persica HOM05D004435 ORTHO05D005103 0.0e+00 1585.5 2459 39.7
Sed0001978 Sechium edule HOM05D004435 ORTHO05D005103 0.0e+00 1582.0 2579 37.7
arahy.Tifrunner.gnm1.ann1.VXNL4X Arachis hypogaea HOM05D004435 ORTHO05D005103 0.0e+00 1577.0 2571 37.0
VMungo0331G1532 Vigna mungo HOM05D004435 ORTHO05D005103 0.0e+00 1577.0 2583 37.7
Lj3g0005802 Lotus japonicus HOM05D004435 ORTHO05D005103 0.0e+00 1576.6 2577 37.7
arahy.Tifrunner.gnm1.ann1.Y0VUSY Arachis hypogaea HOM05D004435 ORTHO05D005103 0.0e+00 1567.7 2571 37.0
Haze_15676 Corylus avellana HOM05D004435 ORTHO05D005103 0.0e+00 1567.4 2625 38.3
Ca_23520_v3 Cicer arietinum L. HOM05D004435 ORTHO05D005103 0.0e+00 1565.4 2603 37.8
TWI14G0481 Tripterygium wilfordii HOM05D004435 ORTHO05D005103 0.0e+00 1565.4 2576 37.6
Psat4g214760 Pisum sativum HOM05D004435 ORTHO05D005103 0.0e+00 1535.4 2592 36.9
Cc02_g39580 Coffea canephora HOM05D004435 ORTHO05D005103 0.0e+00 1534.6 2595 37.2
CAN.G1415.18 Capsicum annuum HOM05D004435 ORTHO05D005103 0.0e+00 1528.8 2594 36.1
Solyc01g096110.3 Solanum lycopersicum HOM05D004435 ORTHO05D005103 0.0e+00 1520.0 2585 35.8
Sopen01g039830 Solanum pennellii HOM05D004435 ORTHO05D005103 0.0e+00 1513.8 2591 35.9
PGR044G1747 Punica granatum HOM05D004435 ORTHO05D005103 0.0e+00 1508.4 2585 37.0
Migut.B01890 Erythranthe guttata HOM05D004435 ORTHO05D005103 0.0e+00 1504.2 2563 36.8
Peaxi162Scf00345g00125 Petunia axillaris HOM05D004435 ORTHO05D005103 0.0e+00 1496.5 2601 36.4
Eucgr.E00041 Eucalyptus grandis HOM05D004435 ORTHO05D005103 0.0e+00 1489.6 2594 36.7
EL10Ac1g00244 Beta vulgaris HOM05D004435 ORTHO05D005103 0.0e+00 1483.8 2586 36.7
THA.LOC104802083 Tarenaya hassleriana HOM05D004435 ORTHO05D005103 0.0e+00 1476.5 2589 37.1
Ah.05g179380 Amaranthus hybridus HOM05D004435 ORTHO05D005103 0.0e+00 1474.9 2593 36.5
Phvul.010G115000 Phaseolus vulgaris HOM05D004435 ORTHO05D005103 0.0e+00 1471.4 2416 38.0
GSVIVG01027171001 Vitis vinifera HOM05D004435 ORTHO05D005103 0.0e+00 1471.1 2444 38.4
HanXRQChr17g0563351 Helianthus annuus HOM05D004435 ORTHO05D005103 0.0e+00 1455.3 2497 36.5
AUR62004511 Chenopodium quinoa HOM05D004435 ORTHO05D005103 0.0e+00 1441.8 2583 36.3
AL4G45990 Arabidopsis lyrata HOM05D004435 ORTHO05D005103 0.0e+00 1440.6 2570 36.0
C04p01360 Brassica napus HOM05D004435 ORTHO05D005103 0.0e+00 1435.2 2550 36.1
BolC4t21789H Brassica oleracea HOM05D004435 ORTHO05D005103 0.0e+00 1434.9 2550 36.2
Thhalv10001279m.g Eutrema salsugineum HOM05D004435 ORTHO05D005103 0.0e+00 1430.6 2567 36.0
A05p01210 Brassica napus HOM05D004435 ORTHO05D005103 0.0e+00 1416.7 2548 36.1
AT2G46560 Arabidopsis thaliana HOM05D004435 ORTHO05D005103 0.0e+00 1416.4 2584 35.9
BraA05t19122Z Brassica rapa HOM05D004435 ORTHO05D005103 0.0e+00 1406.0 2549 36.1
Sp4g28610 Schrenkiella parvula HOM05D004435 ORTHO05D005103 0.0e+00 1393.3 2559 35.8
BcaC02g12673 Brassica carinata HOM05D004435 ORTHO05D005103 0.0e+00 1386.7 2539 35.4
Zm00001eb356500 Zea mays HOM05D004435 ORTHO05D005103 0.0e+00 1382.5 2560 35.3
SGA_v2.0_scaffold5G03029 Striga asiatica HOM05D004435 ORTHO05D005103 0.0e+00 1366.3 2568 34.9
Lsat_1_v5_gn_4_33701 Lactuca sativa HOM05D004435 ORTHO05D005103 0.0e+00 1348.6 2434 35.9
Hund27186 Selenicereus undatus HOM05D004435 ORTHO05D005103 0.0e+00 1333.2 2571 35.2
ECA234G2843 Erigeron canadensis HOM05D004435 ORTHO05D005103 0.0e+00 1311.6 2420 35.6
Nitab4.5_0001763g0010 Nicotiana tabacum HOM05D004435 ORTHO05D005103 0.0e+00 1291.6 2581 33.1
Thecc.01G340200 Theobroma cacao HOM05D004435 ORTHO05D005103 0.0e+00 1271.5 1973 39.9
Sc01g0002520 Simmondsia chinensis HOM05D004435 ORTHO05D005103 0.0e+00 1152.5 1880 37.9
unitig_736.g22808 Utricularia gibba HOM05D004435 ORTHO05D005103 0.0e+00 1097.8 2518 31.7
TPR.G20238 Trifolium pratense HOM05D004435 ORTHO05D005103 0.0e+00 1088.2 1952 35.9
Glyma.16G023300 Glycine max HOM05D004435 ORTHO05D005103 2.9e-295 1020.0 1899 35.0
Carub.0004s2928 Capsella rubella HOM05D004435 ORTHO05D005103 2.0e-272 944.1 1550 37.6
CARHR141900 Cardamine hirsuta HOM05D004435 ORTHO05D005103 2.0e-264 917.5 1511 37.6
Aa31LG1G27940 Aethionema arabicum HOM05D004435 ORTHO05D005103 3.5e-264 916.8 1504 37.8
Hma1.2p1_0101F.1_g049200 Hydrangea macrophylla HOM05D004435 ORTHO05D005103 1.4e-249 868.2 1390 38.3
TAR374G0897 Trochodendron aralioides HOM05D004435 ORTHO05D005103 1.9e-249 867.8 1309 40.9
Lj7C498G9 Lonicera japonica HOM05D004435 ORTHO05D005103 1.3e-242 845.1 1344 37.9
HPP92_020189 Vanilla planifolia HOM05D004435 ORTHO05D005103 3.8e-242 843.6 1328 39.3
ATR0605G097 Amborella trichopoda HOM05D004435 ORTHO05D005103 6.9e-236 822.8 1832 33.5
TAR374G0936 Trochodendron aralioides HOM05D004435 ORTHO05D005103 6.6e-231 806.2 1103 44.1
Pp3c3_34200 Physcomitrium patens HOM05D004435 ORTHO05D005103 7.3e-230 802.7 2738 26.6
Nitab4.5_0007244g0030 Nicotiana tabacum HOM05D004435 ORTHO05D005103 3.5e-208 730.7 1392 34.1
Lj7A498G38 Lonicera japonica HOM05D004435 ORTHO05D005103 1.1e-196 692.6 1076 39.5
DCAR_008666 Daucus carota HOM05D004435 ORTHO05D005103 5.3e-188 663.7 1083 38.6
DCAR_008667 Daucus carota HOM05D004435 ORTHO05D005103 5.3e-188 663.7 1083 38.6
HPP92_020188 Vanilla planifolia HOM05D004435 ORTHO05D005103 3.1e-180 637.9 1193 34.0
ATR0605G027 Amborella trichopoda HOM05D004435 ORTHO05D005103 1.5e-177 629.0 564 56.4
Nitab4.5_0007244g0020 Nicotiana tabacum HOM05D004435 ORTHO05D005103 1.9e-177 628.6 1084 36.3
MBI06_g46370_MAGBIO Magnolia biondii HOM05D004435 ORTHO05D005103 9.4e-177 626.3 473 65.5
Os01g0551900 Oryza sativa ssp. japonica HOM05D004435 ORTHO05D005103 2.4e-172 611.7 595 52.6
DCAR_008669 Daucus carota HOM05D004435 ORTHO05D005103 5.4e-164 583.9 1227 32.8
AagrBONN_evm.TU.Sc2ySwM_228.2861 Anthoceros agrestis HOM05D004435 ORTHO05D005103 2.8e-160 571.6 1741 27.3
CARHR141910 Cardamine hirsuta HOM05D004435 ORTHO05D005103 7.3e-145 520.4 1041 33.7
SMO203G0146 Selaginella moellendorffii HOM05D004435 ORTHO05D005103 3.5e-131 474.9 442 49.8
Hma1.2p1_0101F.1_g049290 Hydrangea macrophylla HOM05D004435 ORTHO05D005103 1.2e-126 459.9 550 47.1
SEGI_18144 Sequoiadendron giganteum HOM05D004435 ORTHO05D005103 2.1e-120 439.1 1078 32.1
Mapoly0001s0466 Marchantia polymorpha HOM05D004435 ORTHO05D005103 3.1e-119 435.3 1741 26.1
Hma1.2p1_0101F.1_g049210 Hydrangea macrophylla HOM05D004435 ORTHO05D005103 4.2e-108 398.3 580 39.8
SEGI_19519 Sequoiadendron giganteum HOM05D004435 ORTHO05D005103 6.0e-99 367.9 942 30.5
TPR.G20227 Trifolium pratense HOM05D004435 ORTHO05D005103 7.9e-99 367.5 447 44.7
BcaC02g12678 Brassica carinata HOM05D004435 ORTHO05D005103 1.0e-98 367.1 760 34.3
Hma1.2p1_0101F.1_g049270 Hydrangea macrophylla HOM05D004435 ORTHO05D005103 1.1e-95 357.1 687 34.6
Cpa.g.c29521 Carica papaya HOM05D004435 ORTHO05D005103 7.4e-81 307.8 475 38.1
Aa31LG1G27950 Aethionema arabicum HOM05D004435 ORTHO05D005103 7.2e-76 291.2 770 29.5
Cpa.g.sc96.43 Carica papaya HOM05D004435 ORTHO05D005103 2.2e-72 279.6 227 57.7
DCAR_008668 Daucus carota HOM05D004435 ORTHO05D005103 2.2e-64 253.1 289 43.9
Hma1.2p1_0101F.1_g049280 Hydrangea macrophylla HOM05D004435 ORTHO05D005103 2.8e-64 252.7 520 33.1
FAN01G0536 Fragaria x ananassa HOM05D004435 ORTHO05D005103 2.2e-61 243.0 197 58.9
CBR_g19326 Chara braunii HOM05D004435 ORTHO05D005103 4.7e-59 235.3 515 32.0
PGSC0003DMG400000235 Solanum tuberosum HOM05D004435 ORTHO05D005103 1.1e-55 224.2 176 57.4
Actinidia20096 Actinidia chinensis HOM05D004435 ORTHO05D005103 1.8e-50 206.8 263 44.5
ATR0242G001 Amborella trichopoda HOM05D004435 ORTHO05D005103 2.6e-49 203.0 176 55.1
Aa31LG1G27960 Aethionema arabicum HOM05D004435 ORTHO05D005103 1.2e-46 194.1 196 48.0
Cpa.g.sc96.46 Carica papaya HOM05D004435 ORTHO05D005103 3.5e-46 192.6 390 33.8
BcaC02g12668 Brassica carinata HOM05D004435 ORTHO05D005103 1.1e-44 187.6 190 46.3
Peaxi162Scf00345g00113 Petunia axillaris HOM05D002646 ORTHO05D002782 1.5e-41 177.2 266 39.5
SEGI_02021 Sequoiadendron giganteum HOM05D004435 ORTHO05D005103 3.2e-39 169.5 138 58.0
Actinidia20091 Actinidia chinensis HOM05D004435 ORTHO05D005103 2.3e-37 163.3 390 32.6
Atru.chr5.691 Acer truncatum HOM05D004435 ORTHO05D005103 4.3e-36 159.1 120 60.8
Psat4g016800 Pisum sativum HOM05D004435 ORTHO05D005103 3.6e-35 156.0 618 24.9
Os01g0552000 Oryza sativa ssp. japonica HOM05D004435 ORTHO05D005103 1.4e-31 144.1 268 35.1
AagrBONN_evm.TU.Sc2ySwM_228.2860 Anthoceros agrestis HOM05D004435 ORTHO05D005103 6.8e-26 125.2 276 31.9
Atru.chr5.692 Acer truncatum HOM05D004435 ORTHO05D005103 1.7e-24 120.6 102 59.8
HanXRQChr10g0310771 Helianthus annuus HOM05D004435 ORTHO05D005103 2.2e-24 120.2 108 51.9
ATR0028G001 Amborella trichopoda HOM05D004435 ORTHO05D005103 1.7e-21 110.5 500 26.0
Ca_26677_v3 Cicer arietinum L. HOM05D004435 ORTHO05D005103 9.5e-20 104.8 75 66.7
MapolyY_B0006 Marchantia polymorpha HOM05D004435 ORTHO05D005103 9.5e-20 104.8 308 28.9
FAN10G3206 Fragaria x ananassa HOM05D004435 ORTHO05D005103 1.2e-17 97.8 108 47.2
FAN10G3182 Fragaria x ananassa HOM05D004435 ORTHO05D005103 2.0e-17 97.1 110 47.3
Psat2g140840 Pisum sativum HOM05D004435 ORTHO05D005103 9.9e-17 94.7 166 39.2
Cpa.g.c42981 Carica papaya HOM05D004435 ORTHO05D005103 2.4e-15 90.1 210 30.0
MCO11G580 Micromonas commoda HOM05D004435 ORTHO05D005103 5.4e-15 89.0 499 23.2
HanXRQChr03g0082981 Helianthus annuus HOM05D004435 ORTHO05D005103 7.1e-15 88.6 111 43.2
Nitab4.5_0007244g0040 Nicotiana tabacum HOM05D004435 ORTHO05D005103 1.7e-13 84.0 121 36.4
Psat5g173920 Pisum sativum HOM05D004435 ORTHO05D005103 2.3e-13 83.6 185 31.4
Psat5g173880 Pisum sativum HOM05D004435 ORTHO05D005103 6.6e-13 82.0 167 32.3
SEGI_36456 Sequoiadendron giganteum HOM05D004435 ORTHO05D005103 1.1e-12 81.3 132 36.4
Hma1.2p1_0101F.1_g049260 Hydrangea macrophylla HOM05D004435 ORTHO05D005103 4.3e-12 79.3 107 40.2
Cfa023431 Carpinus fangiana HOM05D004435 ORTHO05D005103 2.1e-11 77.0 122 38.5
Cre04.g223000 Chlamydomonas reinhardtii HOM05D004435 ORTHO05D005103 1.2e-09 71.2 266 24.1
Atru.chr5.687 Acer truncatum HOM05D002476 ORTHO05D002652 2.6e-09 70.1 57 61.4
BcaNung07057 Brassica carinata HOM05D004435 ORTHO05D005103 2.6e-09 70.1 154 34.4
MD07G1152500 Malus domestica HOM05D004435 ORTHO05D005103 2.2e-08 67.0 52 55.8


User provided reference genes

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