Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE10G1215 Ceratophyllum demersum HOM05D005007 ORTHO05D006053 5.0e-51 204.1 102 100.0
CDE10G0299 Ceratophyllum demersum HOM05D005007 ORTHO05D006053 1.4e-21 106.3 54 92.6
Peaxi162Scf00202g00119 Petunia axillaris HOM05D005007 ORTHO05D006053 6.0e-12 74.3 46 73.9
MBI06_g18688_MAGBIO Magnolia biondii HOM05D005007 ORTHO05D006053 1.3e-11 73.2 41 78.0
Actinidia35601 Actinidia chinensis HOM05D005007 ORTHO05D006053 3.0e-11 72.0 53 66.0
Dinv12754 Davidia involucrata HOM05D005007 ORTHO05D006053 3.0e-11 72.0 53 67.9
Manes.17G059100 Manihot esculenta HOM05D005007 ORTHO05D006053 5.0e-11 71.2 48 70.8
Prupe.4G161500 Prunus persica HOM05D005007 ORTHO05D006053 5.0e-11 71.2 48 66.7
Nitab4.5_0007471g0020 Nicotiana tabacum HOM05D005007 ORTHO05D006053 6.6e-11 70.9 62 59.7
Thecc.07G118400 Theobroma cacao HOM05D005007 ORTHO05D006053 6.6e-11 70.9 46 65.2
Cpa.g.sc77.26 Carica papaya HOM05D005007 ORTHO05D006053 8.6e-11 70.5 52 61.5
COL.COLO4_17528 Corchorus olitorius HOM05D005007 ORTHO05D006053 8.6e-11 70.5 61 57.4
Haze_05357 Corylus avellana HOM05D005007 ORTHO05D006053 8.6e-11 70.5 53 60.4
Manes.16G043000 Manihot esculenta HOM05D005007 ORTHO05D006053 8.6e-11 70.5 56 60.7
RcHm_v2.0_Chr5g0030711 Rosa chinensis HOM05D005007 ORTHO05D006053 1.1e-10 70.1 42 69.0
CiPaw.12G113100 Carya illinoinensis HOM05D005007 ORTHO05D006053 1.5e-10 69.7 54 61.1
Manes.15G095801 Manihot esculenta HOM05D005007 ORTHO05D006053 1.5e-10 69.7 51 62.7
Nitab4.5_0000437g0140 Nicotiana tabacum HOM05D005007 ORTHO05D006053 1.5e-10 69.7 62 59.7
Oeu060171.1 Olea europaea HOM05D005007 ORTHO05D006053 1.9e-10 69.3 50 64.0
Ciclev10017907m.g Citrus clementina HOM05D005007 ORTHO05D006053 2.5e-10 68.9 47 66.0
Haze_09314 Corylus avellana HOM05D005007 ORTHO05D006053 2.5e-10 68.9 41 70.7
Lalb_Chr03g0031211 Lupinus albus HOM05D005007 ORTHO05D006053 2.5e-10 68.9 52 65.4
QL08p025919 Quercus lobata HOM05D005007 ORTHO05D006053 2.5e-10 68.9 40 72.5
Gohir.D01G042700 Gossypium hirsutum HOM05D005007 ORTHO05D006053 3.3e-10 68.6 46 65.2
Gorai.002G053600 Gossypium raimondii HOM05D005007 ORTHO05D006053 3.3e-10 68.6 46 65.2
QL05p049974 Quercus lobata HOM05D005007 ORTHO05D006053 3.3e-10 68.6 47 68.1
Rhsim06G0209000 Rhododendron simsii HOM05D005007 ORTHO05D006053 3.3e-10 68.6 40 75.0
PGSC0003DMG400028468 Solanum tuberosum HOM05D005007 ORTHO05D006053 3.3e-10 68.6 41 75.6
TWI09G0208 Tripterygium wilfordii HOM05D005007 ORTHO05D006053 3.3e-10 68.6 59 59.3
arahy.Tifrunner.gnm1.ann1.G1B0F8 Arachis hypogaea HOM05D005007 ORTHO05D006053 4.3e-10 68.2 40 72.5
Dinv32340 Davidia involucrata HOM05D005007 ORTHO05D006053 4.3e-10 68.2 53 67.9
vmacro11948 Vaccinium macrocarpon HOM05D005007 ORTHO05D006053 4.3e-10 68.2 46 67.4
MD11G1264800 Malus domestica HOM05D005007 ORTHO05D006053 5.6e-10 67.8 40 70.0
Rhsim02G0146700 Rhododendron simsii HOM05D005007 ORTHO05D006053 7.3e-10 67.4 43 67.4
Sabra04G0040400 Salix brachista HOM05D005007 ORTHO05D006053 7.3e-10 67.4 45 66.7
GSVIVG01021255001 Vitis vinifera HOM05D005007 ORTHO05D006053 7.3e-10 67.4 47 70.2
CANSAT35G0905 Cannabis sativa HOM05D005007 ORTHO05D006053 9.5e-10 67.0 44 70.5
Prupe.4G066600 Prunus persica HOM05D005007 ORTHO05D006053 9.5e-10 67.0 44 72.7
ClCG07G010220 Citrullus lanatus HOM05D005007 ORTHO05D006053 1.2e-09 66.6 40 75.0
TWI39G0558 Tripterygium wilfordii HOM05D005007 ORTHO05D006053 1.2e-09 66.6 37 75.7
Actinidia35210 Actinidia chinensis HOM05D005007 ORTHO05D006053 1.6e-09 66.2 40 75.0
Sabra16G0257800 Salix brachista HOM05D005007 ORTHO05D006053 1.6e-09 66.2 37 75.7
Atru.chr10.1572 Acer truncatum HOM05D005007 ORTHO05D006053 2.1e-09 65.9 53 54.7
Glyma.06G227850 Glycine max HOM05D005007 ORTHO05D006053 2.1e-09 65.9 40 70.0
Glyma.06G227900 Glycine max HOM05D005007 ORTHO05D006053 2.1e-09 65.9 40 70.0
Nn3g21105 Nelumbo nucifera HOM05D005007 ORTHO05D006053 2.1e-09 65.9 53 62.3
Potri.011G070400 Populus trichocarpa HOM05D005007 ORTHO05D006053 2.1e-09 65.9 41 70.7
VMungo1127G1862 Vigna mungo HOM05D005007 ORTHO05D006053 2.1e-09 65.9 40 70.0
Eucgr.F01249 Eucalyptus grandis HOM05D005007 ORTHO05D006053 2.8e-09 65.5 48 58.3
Gohir.A01G053200 Gossypium hirsutum HOM05D005007 ORTHO05D006053 2.8e-09 65.5 46 63.0
Lalb_Chr01g0006861 Lupinus albus HOM05D005007 ORTHO05D006053 2.8e-09 65.5 40 70.0
PGR042G3787 Punica granatum HOM05D005007 ORTHO05D006053 2.8e-09 65.5 38 76.3
SalBow8G4395 Salvia bowleyana HOM05D005007 ORTHO05D006053 2.8e-09 65.5 41 68.3
Sed0025620 Sechium edule HOM05D005007 ORTHO05D006053 2.8e-09 65.5 38 76.3
CiPaw.11G159400 Carya illinoinensis HOM05D005007 ORTHO05D006053 3.6e-09 65.1 40 70.0
Cc02_g15570 Coffea canephora HOM05D005007 ORTHO05D006053 3.6e-09 65.1 38 78.9
Nn6g34499 Nelumbo nucifera HOM05D005007 ORTHO05D006053 3.6e-09 65.1 47 70.2
Potri.001G393001 Populus trichocarpa HOM05D005007 ORTHO05D006053 3.6e-09 65.1 43 67.4
Solyc02g072170.3 Solanum lycopersicum HOM05D005007 ORTHO05D006053 3.6e-09 65.1 38 73.7
Sopen02g021150 Solanum pennellii HOM05D005007 ORTHO05D006053 3.6e-09 65.1 38 73.7
MD10G1275600 Malus domestica HOM05D005007 ORTHO05D006053 4.7e-09 64.7 44 70.5
Actinidia39520 Actinidia chinensis HOM05D005007 ORTHO05D006053 6.2e-09 64.3 42 64.3
CiPaw.09G137100 Carya illinoinensis HOM05D005007 ORTHO05D006053 6.2e-09 64.3 38 73.7
Migut.H01413 Erythranthe guttata HOM05D005007 ORTHO05D006053 6.2e-09 64.3 42 66.7
Migut.H01416 Erythranthe guttata HOM05D005007 ORTHO05D006053 6.2e-09 64.3 42 66.7
Oeu039881.1 Olea europaea HOM05D005007 ORTHO05D006053 6.2e-09 64.3 38 73.7
Ciclev10022947m.g Citrus clementina HOM05D005007 ORTHO05D006053 8.0e-09 63.9 38 71.1
HanXRQChr02g0038411 Helianthus annuus HOM05D005007 ORTHO05D006053 8.0e-09 63.9 46 65.2
Phvul.011G165600 Phaseolus vulgaris HOM05D005007 ORTHO05D006053 8.0e-09 63.9 48 60.4
Sabra11G0055100 Salix brachista HOM05D005007 ORTHO05D006053 8.0e-09 63.9 41 68.3
SalBow7G2341 Salvia bowleyana HOM05D005007 ORTHO05D006053 8.0e-09 63.9 42 69.0
DCAR_003989 Daucus carota HOM05D005007 ORTHO05D006053 1.1e-08 63.5 41 73.2
Duzib160G0236 Durio zibethinus HOM05D005007 ORTHO05D006053 1.1e-08 63.5 41 65.9
Duzib192G0425 Durio zibethinus HOM05D005007 ORTHO05D006053 1.1e-08 63.5 41 65.9
Glyma.12G156400 Glycine max HOM05D005007 ORTHO05D006053 1.1e-08 63.5 40 70.0
Atru.chr2.2102 Acer truncatum HOM05D005007 ORTHO05D006053 1.4e-08 63.2 48 58.3
ATR0012G015 Amborella trichopoda HOM05D005007 ORTHO05D006053 1.4e-08 63.2 42 69.0
COL.COLO4_31238 Corchorus olitorius HOM05D005007 ORTHO05D006053 1.4e-08 63.2 61 50.8
Duzib235G0435 Durio zibethinus HOM05D005007 ORTHO05D006053 1.4e-08 63.2 43 65.1
Thecc.06G165800 Theobroma cacao HOM05D005007 ORTHO05D006053 1.4e-08 63.2 41 65.9
Lsat_1_v5_gn_7_25701 Lactuca sativa HOM05D005007 ORTHO05D006053 1.8e-08 62.8 38 73.7
Lsat_1_v5_gn_5_126541 Lactuca sativa HOM05D005007 ORTHO05D006053 2.3e-08 62.4 36 75.0
Potri.004G061100 Populus trichocarpa HOM05D005007 ORTHO05D006053 3.1e-08 62.0 45 60.0
Sabra11G0096200 Salix brachista HOM05D005007 ORTHO05D006053 3.1e-08 62.0 37 73.0
Gohir.A06G133600 Gossypium hirsutum HOM05D005007 ORTHO05D006053 4.0e-08 61.6 41 65.9
Gohir.D05G156101 Gossypium hirsutum HOM05D005007 ORTHO05D006053 4.0e-08 61.6 41 63.4
Gohir.D06G138700 Gossypium hirsutum HOM05D005007 ORTHO05D006053 4.0e-08 61.6 41 65.9
Actinidia18804 Actinidia chinensis HOM05D005007 ORTHO05D006053 5.2e-08 61.2 36 75.0
Aqoxy4G00249 Aquilegia oxysepala HOM05D005007 ORTHO05D006053 5.2e-08 61.2 51 66.7
CSS0026874 Camellia sinensis var. sinensis HOM05D005007 ORTHO05D006053 5.2e-08 61.2 55 58.2
Cpa.g.sc7.108 Carica papaya HOM05D005007 ORTHO05D006053 5.2e-08 61.2 38 73.7
Migut.M00716 Erythranthe guttata HOM05D005007 ORTHO05D006053 5.2e-08 61.2 58 53.4
Gorai.010G161300 Gossypium raimondii HOM05D005007 ORTHO05D006053 5.2e-08 61.2 41 65.9
Hma1.2p1_0934F.1_g238510 Hydrangea macrophylla HOM05D005007 ORTHO05D006053 5.2e-08 61.2 41 65.9
Phvul.002G241000 Phaseolus vulgaris HOM05D005007 ORTHO05D006053 5.2e-08 61.2 38 73.7
CSS0021075 Camellia sinensis var. sinensis HOM05D005007 ORTHO05D006053 6.8e-08 60.8 49 59.2
Lalb_Chr13g0295281 Lupinus albus HOM05D005007 ORTHO05D006053 6.8e-08 60.8 38 73.7
MD00G1009400 Malus domestica HOM05D005007 ORTHO05D006053 6.8e-08 60.8 40 70.0
MD05G1295500 Malus domestica HOM05D005007 ORTHO05D006053 6.8e-08 60.8 40 70.0
Sabra11G0058300 Salix brachista HOM05D005007 ORTHO05D006053 6.8e-08 60.8 38 68.4
Medtr8g087320 Medicago truncatula HOM05D005007 ORTHO05D006053 8.9e-08 60.5 53 54.7
AUR62039477 Chenopodium quinoa HOM05D005007 ORTHO05D006053 1.2e-07 60.1 38 71.1
Ca_17898_v3 Cicer arietinum L. HOM05D005007 ORTHO05D006053 1.2e-07 60.1 49 53.1
CsaV3_4G008110 Cucumis sativus L. HOM05D005007 ORTHO05D006053 1.5e-07 59.7 40 65.0
Peaxi162Scf00111g01466 Petunia axillaris HOM05D005007 ORTHO05D006053 1.5e-07 59.7 35 77.1
Carub.0007s2243 Capsella rubella HOM05D005007 ORTHO05D006053 2.0e-07 59.3 55 52.7
Sed0017213 Sechium edule HOM05D005007 ORTHO05D006053 2.0e-07 59.3 41 68.3
arahy.Tifrunner.gnm1.ann1.HJBU6U Arachis hypogaea HOM05D005007 ORTHO05D006053 2.6e-07 58.9 37 70.3
arahy.Tifrunner.gnm1.ann1.VZS9XU Arachis hypogaea HOM05D005007 ORTHO05D006053 2.6e-07 58.9 37 70.3
MELO3C007199.2 Cucumis melo HOM05D005007 ORTHO05D006053 2.6e-07 58.9 40 67.5
CsaV3_6G051040 Cucumis sativus L. HOM05D005007 ORTHO05D006053 2.6e-07 58.9 40 67.5
Glyma.05G160900 Glycine max HOM05D005007 ORTHO05D006053 2.6e-07 58.9 38 71.1
PGSC0003DMG400044408 Solanum tuberosum HOM05D005007 ORTHO05D006053 2.6e-07 58.9 35 74.3
TPR.G6805 Trifolium pratense HOM05D000213 ORTHO05D000426 2.6e-07 58.9 38 65.8
unitig_0.g744 Utricularia gibba HOM05D005007 ORTHO05D006053 2.6e-07 58.9 47 57.4
Ah.09g233580 Amaranthus hybridus HOM05D005007 ORTHO05D006053 3.4e-07 58.5 38 71.1
Psat7g068680 Pisum sativum HOM05D005007 ORTHO05D006053 3.4e-07 58.5 53 54.7
Ah.14g087010 Amaranthus hybridus HOM05D005007 ORTHO05D006053 4.4e-07 58.2 38 68.4
ClCG01G023890 Citrullus lanatus HOM05D005007 ORTHO05D006053 4.4e-07 58.2 40 67.5
DCAR_007938 Daucus carota HOM05D005007 ORTHO05D006053 4.4e-07 58.2 38 71.1
ECA236G3784 Erigeron canadensis HOM05D005007 ORTHO05D006053 4.4e-07 58.2 38 65.8
Potri.011G108700 Populus trichocarpa HOM05D005007 ORTHO05D006053 4.4e-07 58.2 50 56.0
Sed0011988 Sechium edule HOM05D005007 ORTHO05D006053 4.4e-07 58.2 50 56.0
BcaB04g18501 Brassica carinata HOM05D005007 ORTHO05D006053 5.8e-07 57.8 48 56.2
Os06g0551500 Oryza sativa ssp. japonica HOM05D005007 ORTHO05D006053 5.8e-07 57.8 35 68.6
HPP92_008753 Vanilla planifolia HOM05D005007 ORTHO05D006053 7.5e-07 57.4 49 53.1
C03p81500 Brassica napus HOM05D005007 ORTHO05D006053 9.8e-07 57.0 39 61.5
BolC3t20421H Brassica oleracea HOM05D005007 ORTHO05D006053 9.8e-07 57.0 39 61.5
Gohir.A05G153450 Gossypium hirsutum HOM05D005007 ORTHO05D006053 9.8e-07 57.0 49 55.1
Sc16g0007670 Simmondsia chinensis HOM05D005007 ORTHO05D006053 9.8e-07 57.0 48 52.1
Glyma.08G118300 Glycine max HOM05D005007 ORTHO05D006053 1.3e-06 56.6 38 68.4
EL10Ac4g08365 Beta vulgaris HOM05D005007 ORTHO05D006053 1.7e-06 56.2 35 71.4
BraA08t33391Z Brassica rapa HOM05D005007 ORTHO05D006053 1.7e-06 56.2 39 61.5
Thhalv10027446m.g Eutrema salsugineum HOM05D005007 ORTHO05D006053 2.2e-06 55.8 52 53.8
SGA_v2.0_scaffold181G39748 Striga asiatica HOM05D002453 ORTHO05D008746 2.2e-06 55.8 38 68.4
RcHm_v2.0_Chr5g0011631 Rosa chinensis HOM05D005007 ORTHO05D006053 2.9e-06 55.5 39 66.7
FvH4_3g07320 Fragaria vesca HOM05D005007 ORTHO05D006053 3.7e-06 55.1 40 65.0
FAN11G0120 Fragaria x ananassa HOM05D005007 ORTHO05D006053 3.7e-06 55.1 40 65.0
FAN21G0366 Fragaria x ananassa HOM05D005007 ORTHO05D006053 3.7e-06 55.1 40 65.0
Sp7g17510 Schrenkiella parvula HOM05D005007 ORTHO05D006053 4.9e-06 54.7 48 54.2
MSTRG.7429 Avicennia marina HOM05D005007 ORTHO05D006053 8.3e-06 53.9 38 63.2
Potri.001G389150 Populus trichocarpa HOM05D005007 ORTHO05D006053 8.3e-06 53.9 50 52.0


User provided reference genes

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