Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE10G1089 Ceratophyllum demersum HOM05D004891 ORTHO05D005997 7.1e-156 553.9 283 100.0
CDE10G0607 Ceratophyllum demersum HOM05D004891 ORTHO05D005997 6.1e-131 471.1 274 88.7
Nn7g37380 Nelumbo nucifera HOM05D004891 ORTHO05D005997 2.5e-76 289.7 283 57.2
TAR375G0232 Trochodendron aralioides HOM05D004891 ORTHO05D005997 4.3e-76 288.9 287 55.7
MBI06_g22405_MAGBIO Magnolia biondii HOM05D004891 ORTHO05D005997 4.4e-73 278.9 278 56.5
PSO170G4664 Papaver somniferum HOM05D004891 ORTHO05D005997 3.2e-71 272.7 284 55.3
PSO063G3645 Papaver somniferum HOM05D004891 ORTHO05D005997 2.7e-70 269.6 285 54.4
Dinv28341 Davidia involucrata HOM05D004891 ORTHO05D005997 6.6e-69 265.0 285 53.7
Actinidia08623 Actinidia chinensis HOM05D004891 ORTHO05D005997 8.6e-69 264.6 283 54.8
Thecc.03G192100 Theobroma cacao HOM05D004891 ORTHO05D005997 2.1e-67 260.0 280 53.9
GSVIVG01028731001 Vitis vinifera HOM05D004891 ORTHO05D005997 4.7e-67 258.8 277 53.4
COL.COLO4_35665 Corchorus olitorius HOM05D004891 ORTHO05D005997 6.8e-66 255.0 279 52.3
Haze_00106 Corylus avellana HOM05D004891 ORTHO05D005997 6.8e-66 255.0 289 52.6
Duzib084G0775 Durio zibethinus HOM05D004891 ORTHO05D005997 1.5e-65 253.8 278 53.6
Gorai.008G271100 Gossypium raimondii HOM05D004891 ORTHO05D005997 1.5e-65 253.8 281 52.3
Gohir.D12G253400 Gossypium hirsutum HOM05D004891 ORTHO05D005997 2.0e-65 253.4 281 52.3
CiPaw.05G258300 Carya illinoinensis HOM05D004891 ORTHO05D005997 2.6e-65 253.1 287 52.6
Gohir.A12G252100 Gossypium hirsutum HOM05D004891 ORTHO05D005997 3.4e-65 252.7 281 52.0
Ciclev10005604m.g Citrus clementina HOM05D004891 ORTHO05D005997 5.8e-65 251.9 280 51.4
QL09p011070 Quercus lobata HOM05D004891 ORTHO05D005997 5.8e-65 251.9 283 52.3
Actinidia34190 Actinidia chinensis HOM05D004891 ORTHO05D005997 1.7e-64 250.4 276 53.6
Cfa016358 Carpinus fangiana HOM05D004891 ORTHO05D005997 2.9e-64 249.6 290 52.1
CiPaw.06G007100 Carya illinoinensis HOM05D004891 ORTHO05D005997 4.9e-64 248.8 290 52.1
HanXRQChr14g0462811 Helianthus annuus HOM05D004891 ORTHO05D005997 6.4e-64 248.4 278 51.4
Aqoxy5G04112 Aquilegia oxysepala HOM05D004891 ORTHO05D005997 8.3e-64 248.1 288 49.3
Manes.14G018900 Manihot esculenta HOM05D004891 ORTHO05D005997 1.1e-63 247.7 278 52.5
Rhsim03G0198300 Rhododendron simsii HOM05D004891 ORTHO05D005997 1.4e-63 247.3 297 49.2
Potri.015G022900 Populus trichocarpa HOM05D004891 ORTHO05D005997 1.9e-63 246.9 282 51.8
RcHm_v2.0_Chr1g0380031 Rosa chinensis HOM05D004891 ORTHO05D005997 1.9e-63 246.9 285 51.6
Hma1.2p1_0327F.1_g126710 Hydrangea macrophylla HOM05D004891 ORTHO05D005997 1.6e-62 243.8 287 51.9
Cpa.g.sc3.45 Carica papaya HOM05D004891 ORTHO05D005997 3.9e-61 239.2 278 49.3
Manes.06G156500 Manihot esculenta HOM05D004891 ORTHO05D005997 5.1e-61 238.8 282 48.9
FAN10G2020 Fragaria x ananassa HOM05D004891 ORTHO05D005997 1.1e-60 237.7 292 49.0
FAN10G2063 Fragaria x ananassa HOM05D004891 ORTHO05D005997 1.1e-60 237.7 292 49.0
Lalb_Chr01g0014881 Lupinus albus HOM05D004891 ORTHO05D005997 1.1e-60 237.7 279 50.5
arahy.Tifrunner.gnm1.ann1.6V5JG4 Arachis hypogaea HOM05D004891 ORTHO05D005997 1.9e-60 236.9 285 51.9
FvH4_7g30940 Fragaria vesca HOM05D004891 ORTHO05D005997 2.5e-60 236.5 296 49.0
FAN06G4508 Fragaria x ananassa HOM05D004891 ORTHO05D005997 2.5e-60 236.5 296 49.0
arahy.Tifrunner.gnm1.ann1.PB2THD Arachis hypogaea HOM05D004891 ORTHO05D005997 3.3e-60 236.1 283 52.3
MSTRG.8493 Avicennia marina HOM05D004891 ORTHO05D005997 3.3e-60 236.1 287 50.9
Glyma.13G040300 Glycine max HOM05D004891 ORTHO05D005997 1.2e-59 234.2 288 48.3
FAN01G2480 Fragaria x ananassa HOM05D004891 ORTHO05D005997 2.1e-59 233.4 298 48.3
Glyma.14G123700 Glycine max HOM05D004891 ORTHO05D005997 3.6e-59 232.6 281 50.2
Carub.0008s1346 Capsella rubella HOM05D004891 ORTHO05D005997 8.1e-59 231.5 278 46.8
Lsat_1_v5_gn_2_134260 Lactuca sativa HOM05D004891 ORTHO05D005997 8.1e-59 231.5 280 50.4
MD07G1284300 Malus domestica HOM05D004891 ORTHO05D005997 1.1e-58 231.1 281 49.5
Potri.012G032200 Populus trichocarpa HOM05D004891 ORTHO05D005997 1.1e-58 231.1 290 49.0
Cc02_g01930 Coffea canephora HOM05D004891 ORTHO05D005997 1.8e-58 230.3 299 47.8
Psat6g039240 Pisum sativum HOM05D004891 ORTHO05D005997 1.8e-58 230.3 228 57.9
Lj1g0012174 Lotus japonicus HOM05D004891 ORTHO05D005997 2.4e-58 229.9 289 49.5
Phvul.008G159100 Phaseolus vulgaris HOM05D004891 ORTHO05D005997 4.0e-58 229.2 281 49.8
TPR.G33305 Trifolium pratense HOM05D004891 ORTHO05D005997 5.2e-58 228.8 279 49.5
PGR142G0227 Punica granatum HOM05D004891 ORTHO05D005997 8.9e-58 228.0 279 48.0
CARHR266320 Cardamine hirsuta HOM05D004891 ORTHO05D005997 1.2e-57 227.6 274 46.7
CAN.G108.22 Capsicum annuum HOM05D004891 ORTHO05D005997 1.5e-57 227.3 279 49.8
FAN06G0473 Fragaria x ananassa HOM05D004891 ORTHO05D005997 1.5e-57 227.3 323 45.5
Medtr1g028580 Medicago truncatula HOM05D004891 ORTHO05D005997 2.0e-57 226.9 279 49.5
THA.LOC104825132 Tarenaya hassleriana HOM05D004891 ORTHO05D005997 2.0e-57 226.9 284 47.2
FAN03G3090 Fragaria x ananassa HOM05D004891 ORTHO05D005997 2.6e-57 226.5 308 46.8
MD01G1214600 Malus domestica HOM05D004891 ORTHO05D005997 2.6e-57 226.5 280 49.3
Nitab4.5_0000473g0100 Nicotiana tabacum HOM05D004891 ORTHO05D005997 4.4e-57 225.7 290 49.0
Prupe.2G306500 Prunus persica HOM05D004891 ORTHO05D005997 5.8e-57 225.3 278 50.0
TWI23G0467 Tripterygium wilfordii HOM05D004891 ORTHO05D005997 7.6e-57 224.9 277 48.4
VMungo0647G1360 Vigna mungo HOM05D004891 ORTHO05D005997 7.6e-57 224.9 274 49.6
CSS0046287 Camellia sinensis var. sinensis HOM05D004891 ORTHO05D005997 1.3e-56 224.2 297 48.1
Nitab4.5_0000472g0010 Nicotiana tabacum HOM05D004891 ORTHO05D005997 1.3e-56 224.2 290 49.0
PGSC0003DMG400009098 Solanum tuberosum HOM05D004891 ORTHO05D005997 1.7e-56 223.8 287 48.8
Sopen03g003460 Solanum pennellii HOM05D004891 ORTHO05D005997 2.9e-56 223.0 284 48.6
MELO3C006974.2 Cucumis melo HOM05D004891 ORTHO05D005997 3.8e-56 222.6 287 48.4
CANSAT21G1757 Cannabis sativa HOM05D004891 ORTHO05D005997 4.9e-56 222.2 282 48.6
Oeu037109.1 Olea europaea HOM05D004891 ORTHO05D005997 6.4e-56 221.9 286 49.0
TWI14G0964 Tripterygium wilfordii HOM05D004891 ORTHO05D005997 6.4e-56 221.9 277 47.7
HPP92_024018 Vanilla planifolia HOM05D004891 ORTHO05D005997 6.4e-56 221.9 282 47.5
CsaV3_3G021850 Cucumis sativus L. HOM05D004891 ORTHO05D005997 8.4e-56 221.5 286 48.3
SalBow2G0402 Salvia bowleyana HOM05D004891 ORTHO05D005997 1.4e-55 220.7 292 49.3
Sopen03g003400 Solanum pennellii HOM05D004891 ORTHO05D005997 1.4e-55 220.7 288 48.3
ClCG05G008660 Citrullus lanatus HOM05D004891 ORTHO05D005997 1.9e-55 220.3 282 47.5
Sp6g15430 Schrenkiella parvula HOM05D004891 ORTHO05D005997 4.1e-55 219.2 283 44.5
Thhalv10014380m.g Eutrema salsugineum HOM05D004891 ORTHO05D005997 7.1e-55 218.4 281 45.2
AT5G53280 Arabidopsis thaliana HOM05D004891 ORTHO05D005997 9.2e-55 218.0 277 45.1
AL8G27930 Arabidopsis lyrata HOM05D004891 ORTHO05D005997 2.1e-54 216.9 277 45.5
Aa31LG3G9250 Aethionema arabicum HOM05D004891 ORTHO05D005997 7.8e-54 214.9 275 47.6
ECA238G3691 Erigeron canadensis HOM05D004891 ORTHO05D005997 1.7e-53 213.8 282 46.5
Hund11687 Selenicereus undatus HOM05D004891 ORTHO05D005997 8.7e-53 211.5 274 47.8
EL10Ac3g05352 Beta vulgaris HOM05D004891 ORTHO05D005997 1.1e-52 211.1 287 44.3
Hund04825 Selenicereus undatus HOM05D004891 ORTHO05D005997 1.1e-52 211.1 274 47.1
BcaB08g35688 Brassica carinata HOM05D004891 ORTHO05D005997 1.5e-52 210.7 278 43.5
Lj3A911G21 Lonicera japonica HOM05D004891 ORTHO05D005997 5.6e-52 208.8 324 42.3
Oeu024464.1 Olea europaea HOM05D004891 ORTHO05D005997 5.6e-52 208.8 289 47.8
SGA_v2.0_scaffold10G05259 Striga asiatica HOM05D004891 ORTHO05D005997 5.6e-52 208.8 282 47.5
Hund11688 Selenicereus undatus HOM05D004891 ORTHO05D005997 9.6e-52 208.0 274 47.1
Actinidia34193 Actinidia chinensis HOM05D004891 ORTHO05D005997 3.6e-51 206.1 272 47.8
Sabra12G0021600 Salix brachista HOM05D004891 ORTHO05D005997 3.6e-51 206.1 355 40.0
AUR62031485 Chenopodium quinoa HOM05D004891 ORTHO05D005997 4.7e-51 205.7 296 43.9
A03p15250 Brassica napus HOM05D004891 ORTHO05D005997 6.2e-51 205.3 282 43.6
Eucgr.K00322 Eucalyptus grandis HOM05D004891 ORTHO05D005997 8.1e-51 204.9 290 46.6
Migut.F01055 Erythranthe guttata HOM05D004891 ORTHO05D005997 1.1e-50 204.5 286 46.2
BraA03t10818Z Brassica rapa HOM05D004891 ORTHO05D005997 2.4e-50 203.4 278 43.2
BcaC04g20477 Brassica carinata HOM05D004891 ORTHO05D005997 3.1e-50 203.0 277 44.0
C09p43070 Brassica napus HOM05D004891 ORTHO05D005997 3.1e-50 203.0 277 44.0
BolC9t57178H Brassica oleracea HOM05D004891 ORTHO05D005997 3.1e-50 203.0 277 44.0
BcaB01g04239 Brassica carinata HOM05D004891 ORTHO05D005997 6.9e-50 201.8 287 42.5
Sc19g0001110 Simmondsia chinensis HOM05D004891 ORTHO05D005997 9.0e-50 201.4 277 48.0
A10p10800 Brassica napus HOM05D004891 ORTHO05D005997 1.5e-49 200.7 277 44.0
Sabra15G0017200 Salix brachista HOM05D004891 ORTHO05D005997 7.6e-49 198.4 350 38.6
C03p17830 Brassica napus HOM05D004891 ORTHO05D005997 9.9e-49 198.0 277 43.0
BolC3t14190H Brassica oleracea HOM05D004891 ORTHO05D005997 1.3e-48 197.6 277 43.0
BraA10t43162Z Brassica rapa HOM05D004891 ORTHO05D005997 1.7e-48 197.2 277 43.3
Ah.07g206050 Amaranthus hybridus HOM05D004891 ORTHO05D005997 1.2e-46 191.0 289 41.9
BcaC01g06235 Brassica carinata HOM05D004891 ORTHO05D005997 2.1e-46 190.3 226 46.0
TAR374G1584 Trochodendron aralioides HOM05D004891 ORTHO05D005997 2.7e-46 189.9 175 57.7
Actinidia03156 Actinidia chinensis HOM05D004891 ORTHO05D005997 6.0e-46 188.7 283 44.9
Dinv35303 Davidia involucrata HOM05D004891 ORTHO05D005997 1.7e-45 187.2 169 59.8
Sed0007260 Sechium edule HOM05D004891 ORTHO05D005997 1.7e-45 187.2 277 44.4
Sed0021890 Sechium edule HOM05D004891 ORTHO05D005997 2.3e-45 186.8 277 42.6
ATR1093G054 Amborella trichopoda HOM05D004891 ORTHO05D005997 6.6e-45 185.3 296 42.9
unitig_90.g27528 Utricularia gibba HOM05D004891 ORTHO05D005997 1.3e-40 171.0 236 46.6
Zm00001eb237900 Zea mays HOM05D004891 ORTHO05D005997 6.4e-40 168.7 223 46.6
vmacro06579 Vaccinium macrocarpon HOM05D004891 ORTHO05D005997 1.0e-37 161.4 478 30.8
Lj1C1012T12 Lonicera japonica HOM05D004891 ORTHO05D005997 6.7e-37 158.7 268 41.8
Os01g0224200 Oryza sativa ssp. japonica HOM05D004891 ORTHO05D005997 1.3e-35 154.5 277 40.4
Zm00001eb203870 Zea mays HOM05D004891 ORTHO05D005997 1.1e-34 151.4 283 37.5
vmacro23247 Vaccinium macrocarpon HOM05D004891 ORTHO05D005997 1.8e-34 150.6 509 28.9
Ah.13g069830 Amaranthus hybridus HOM05D004891 ORTHO05D005997 2.0e-33 147.1 225 42.2
Solyc03g007500.4 Solanum lycopersicum HOM05D004891 ORTHO05D005997 1.7e-32 144.1 136 59.6
Solyc03g007440.4 Solanum lycopersicum HOM05D004891 ORTHO05D005997 2.9e-32 143.3 136 59.6
Peaxi162Scf00904g00326 Petunia axillaris HOM05D004891 ORTHO05D005997 3.8e-32 142.9 146 56.2
Os06g0506000 Oryza sativa ssp. japonica HOM05D004891 ORTHO05D005997 4.2e-31 139.4 279 38.7
unitig_736.g22889 Utricularia gibba HOM05D004891 ORTHO05D005997 9.3e-31 138.3 233 44.2
Atru.chr1.279 Acer truncatum HOM05D004891 ORTHO05D005997 2.1e-30 137.1 117 61.5
CDE02G0860 Ceratophyllum demersum HOM05D004891 ORTHO05D005997 3.9e-29 132.9 278 34.5
Zm00001eb338960 Zea mays HOM05D004891 ORTHO05D005997 3.9e-29 132.9 209 43.5
CSS0025805 Camellia sinensis var. sinensis HOM05D004891 ORTHO05D005997 5.6e-28 129.0 177 46.9
MSTRG.23354 Avicennia marina HOM05D004891 ORTHO05D005997 1.4e-26 124.4 176 43.2
AUR62021048 Chenopodium quinoa HOM05D004891 ORTHO05D005997 5.8e-25 119.0 177 41.2
DCAR_014529 Daucus carota HOM05D004891 ORTHO05D005997 1.7e-24 117.5 177 45.2
Thecc.01G303500 Theobroma cacao HOM05D004891 ORTHO05D005997 4.9e-24 115.9 98 63.3
TAR629G2914 Trochodendron aralioides HOM05D004891 ORTHO05D005997 4.6e-22 109.4 266 34.6
MBI06_g22406_MAGBIO Magnolia biondii HOM05D004891 ORTHO05D010341 7.4e-20 102.1 280 32.1
MSTRG.62 Avicennia marina HOM05D004891 ORTHO05D005997 2.2e-19 100.5 106 53.8
Oeu036884.1 Olea europaea HOM05D004891 ORTHO05D005997 4.1e-18 96.3 102 54.9
Oeu036883.1 Olea europaea HOM05D004891 ORTHO05D005997 5.9e-17 92.4 174 41.4
Pp3c22_17090 Physcomitrium patens HOM05D001401 ORTHO05D006368 7.2e-15 85.5 149 35.6
AL8G27980 Arabidopsis lyrata HOM05D004891 ORTHO05D005997 1.4e-13 81.3 150 32.0
Pp3c17_18860 Physcomitrium patens HOM05D001401 ORTHO05D006368 2.3e-13 80.5 147 35.4
ATR0733G254 Amborella trichopoda HOM05D001401 ORTHO05D006368 2.5e-12 77.0 149 35.6
AagrBONN_evm.TU.Sc2ySwM_228.2503 Anthoceros agrestis HOM05D001401 ORTHO05D006368 3.3e-12 76.6 161 32.9
Pp3c2_5300 Physcomitrium patens HOM05D001401 ORTHO05D006368 9.7e-12 75.1 148 34.5
CBR_g41289 Chara braunii HOM05D004891 ORTHO05D006368 8.2e-11 72.0 166 33.1
Mapoly0001s0328 Marchantia polymorpha HOM05D001401 ORTHO05D006368 1.1e-10 71.6 162 33.3
SEGI_14403 Sequoiadendron giganteum HOM05D001401 ORTHO05D006368 2.4e-10 70.5 71 50.7
TAR629G2366 Trochodendron aralioides HOM05D008545 ORTHO05D010341 6.9e-10 68.9 272 25.4
Pp3c19_14090 Physcomitrium patens HOM05D001401 ORTHO05D006368 9.1e-10 68.6 147 33.3
SEGI_34742 Sequoiadendron giganteum HOM05D004891 ORTHO05D005997 1.5e-09 67.8 80 46.2
Zm00001eb192840 Zea mays HOM05D004891 ORTHO05D005997 1.5e-09 67.8 102 46.1
Pp3c1_32220 Physcomitrium patens HOM05D001401 ORTHO05D006368 2.6e-09 67.0 148 32.4
Sabra10G0105200 Salix brachista HOM05D004891 ORTHO05D005997 8.5e-08 62.0 87 43.7
Sabra15G0071500 Salix brachista HOM05D004891 ORTHO05D005997 8.5e-08 62.0 87 43.7
Migut.N01216 Erythranthe guttata HOM05D001401 ORTHO05D006368 1.1e-07 61.6 157 29.3
SEGI_09179 Sequoiadendron giganteum HOM05D004891 ORTHO05D005997 1.1e-07 61.6 151 31.8
SEGI_17958 Sequoiadendron giganteum HOM05D001401 ORTHO05D006368 1.1e-07 61.6 149 32.2
SEGI_25677 Sequoiadendron giganteum HOM05D004891 ORTHO05D005997 1.4e-07 61.2 143 30.8
Oeu034083.1 Olea europaea HOM05D001401 ORTHO05D006368 2.5e-07 60.5 105 36.2
Pp3c18_7150 Physcomitrium patens HOM05D001401 ORTHO05D006368 3.2e-07 60.1 182 28.6
GSVIVG01027047001 Vitis vinifera HOM05D008545 ORTHO05D010341 7.2e-07 58.9 150 30.7
Cpa.g.sc62.97 Carica papaya HOM05D001401 ORTHO05D006368 1.6e-06 57.8 162 31.5
MELO3C021952.2 Cucumis melo HOM05D001401 ORTHO05D002222 1.6e-06 57.8 153 31.4
Duzib138G0500 Durio zibethinus HOM05D008545 ORTHO05D010341 1.6e-06 57.8 154 31.2
Sabra12G0063200 Salix brachista HOM05D004891 ORTHO05D005997 1.6e-06 57.8 114 36.8
Thecc.01G347700 Theobroma cacao HOM05D008545 ORTHO05D010341 2.1e-06 57.4 225 28.9
TAR381G0019 Trochodendron aralioides HOM05D001401 ORTHO05D006368 2.7e-06 57.0 150 30.0
Gohir.D07G144800 Gossypium hirsutum HOM05D008545 ORTHO05D010341 3.6e-06 56.6 277 24.9
Gorai.001G156800 Gossypium raimondii HOM05D008545 ORTHO05D010341 3.6e-06 56.6 277 24.9
Hund06213 Selenicereus undatus HOM05D001401 ORTHO05D006368 3.6e-06 56.6 146 32.9
SGA_v2.0_scaffold58G20583 Striga asiatica HOM05D001401 ORTHO05D006368 6.1e-06 55.8 115 32.2
unitig_21.g20770 Utricularia gibba HOM05D000370 ORTHO05D001335 6.1e-06 55.8 99 34.3
MSTRG.5386 Avicennia marina HOM05D001401 ORTHO05D006368 7.9e-06 55.5 81 38.3
CSS0024380 Camellia sinensis var. sinensis HOM05D008545 ORTHO05D010341 7.9e-06 55.5 142 31.7
Nn1g05138 Nelumbo nucifera HOM05D001401 ORTHO05D006368 7.9e-06 55.5 86 39.5
Nn5g29458 Nelumbo nucifera HOM05D001401 ORTHO05D006368 7.9e-06 55.5 75 41.3


User provided reference genes

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