Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE10G1036 Ceratophyllum demersum HOM05D003667 ORTHO05D004397 6.5e-80 301.2 223 100.0
CDE10G1021 Ceratophyllum demersum HOM05D003667 ORTHO05D004397 6.8e-77 291.2 223 72.2
Nn6g34578 Nelumbo nucifera HOM05D003667 ORTHO05D004397 1.1e-50 204.1 221 53.4
TAR623G0153 Trochodendron aralioides HOM05D003667 ORTHO05D004397 2.4e-50 203.0 220 53.6
MBI17_g12494_MAGBIO Magnolia biondii HOM05D003667 ORTHO05D004397 1.2e-49 200.7 224 54.0
Nn7g37255 Nelumbo nucifera HOM05D003667 ORTHO05D004397 1.2e-49 200.7 222 54.1
CsaV3_4G012110 Cucumis sativus L. HOM05D003667 ORTHO05D004397 6.0e-49 198.4 220 51.8
ClCG04G005470 Citrullus lanatus HOM05D003667 ORTHO05D004397 1.3e-48 197.2 220 50.9
MELO3C008823.2 Cucumis melo HOM05D003667 ORTHO05D004397 3.0e-48 196.1 220 50.9
PSO170G5262 Papaver somniferum HOM05D003667 ORTHO05D004397 5.1e-48 195.3 221 51.1
GSVIVG01029952001 Vitis vinifera HOM05D003667 ORTHO05D004397 8.6e-48 194.5 222 50.9
Aqoxy1G00535 Aquilegia oxysepala HOM05D003667 ORTHO05D004397 4.3e-47 192.2 219 52.1
PSO357G0141 Papaver somniferum HOM05D003667 ORTHO05D004397 1.2e-46 190.7 221 49.8
Hma1.2p1_0106F.1_g051140 Hydrangea macrophylla HOM05D003667 ORTHO05D004397 1.6e-46 190.3 219 49.8
ClCG02G007830 Citrullus lanatus HOM05D003667 ORTHO05D004397 3.6e-46 189.1 220 49.5
Lj2A112G40 Lonicera japonica HOM05D003667 ORTHO05D004397 4.7e-46 188.7 221 49.8
Sed0016620 Sechium edule HOM05D003667 ORTHO05D004397 8.1e-46 188.0 219 48.4
PSO675G2224 Papaver somniferum HOM05D003667 ORTHO05D004397 1.1e-45 187.6 218 49.5
PSO541G6155 Papaver somniferum HOM05D003667 ORTHO05D004397 2.3e-45 186.4 218 50.0
Sed0010728 Sechium edule HOM05D003667 ORTHO05D004397 2.3e-45 186.4 223 48.0
MBI05_g12099_MAGBIO Magnolia biondii HOM05D003667 ORTHO05D004397 3.1e-45 186.0 212 52.4
Ciclev10022078m.g Citrus clementina HOM05D003667 ORTHO05D004397 5.2e-45 185.3 222 49.1
FAN11G0144 Fragaria x ananassa HOM05D003667 ORTHO05D004397 5.2e-45 185.3 219 49.8
FAN25G1089 Fragaria x ananassa HOM05D003667 ORTHO05D004397 5.2e-45 185.3 219 49.8
Eucgr.K01520 Eucalyptus grandis HOM05D003667 ORTHO05D004397 6.8e-45 184.9 225 48.0
HanXRQChr14g0453611 Helianthus annuus HOM05D003667 ORTHO05D004397 6.8e-45 184.9 220 60.0
Manes.09G137700 Manihot esculenta HOM05D003667 ORTHO05D004397 6.8e-45 184.9 222 48.6
Lsat_1_v5_gn_6_31701 Lactuca sativa HOM05D003667 ORTHO05D004397 1.2e-44 184.1 222 61.7
RcHm_v2.0_Chr5g0045181 Rosa chinensis HOM05D003667 ORTHO05D004397 1.2e-44 184.1 219 48.9
FvH4_3g25040 Fragaria vesca HOM05D003667 ORTHO05D004397 1.5e-44 183.7 219 49.3
Gohir.A11G231200 Gossypium hirsutum HOM05D003667 ORTHO05D004397 1.5e-44 183.7 221 47.5
Gohir.D11G242600 Gossypium hirsutum HOM05D003667 ORTHO05D004397 1.5e-44 183.7 221 48.0
Thecc.05G244000 Theobroma cacao HOM05D003667 ORTHO05D004397 1.5e-44 183.7 223 47.1
Gorai.007G256800 Gossypium raimondii HOM05D003667 ORTHO05D004397 2.0e-44 183.3 221 47.5
Duzib106G0749 Durio zibethinus HOM05D003667 ORTHO05D004397 3.4e-44 182.6 222 46.4
Actinidia06203 Actinidia chinensis HOM05D003667 ORTHO05D004397 4.4e-44 182.2 224 47.8
Rhsim13G0206500 Rhododendron simsii HOM05D003667 ORTHO05D004397 7.6e-44 181.4 220 48.2
Atru.chr2.1481 Acer truncatum HOM05D003667 ORTHO05D004397 1.3e-43 180.6 222 48.2
CANSAT78G1932 Cannabis sativa HOM05D003667 ORTHO05D004397 1.3e-43 180.6 221 46.2
COL.COLO4_28620 Corchorus olitorius HOM05D003667 ORTHO05D004397 2.2e-43 179.9 223 45.7
FAN21G0540 Fragaria x ananassa HOM05D003667 ORTHO05D004397 2.9e-43 179.5 219 48.9
TWI38G1994 Tripterygium wilfordii HOM05D003667 ORTHO05D004397 1.1e-42 177.6 222 45.9
CSS0004374 Camellia sinensis var. sinensis HOM05D003667 ORTHO05D004397 5.4e-42 175.3 223 47.1
CSS0013214 Camellia sinensis var. sinensis HOM05D003667 ORTHO05D004397 5.4e-42 175.3 223 47.1
HanXRQChr07g0197181 Helianthus annuus HOM05D003667 ORTHO05D004397 7.1e-42 174.9 222 45.0
Lsat_1_v5_gn_2_103600 Lactuca sativa HOM05D003667 ORTHO05D004397 9.2e-42 174.5 219 60.7
Actinidia07960 Actinidia chinensis HOM05D003667 ORTHO05D004397 2.1e-41 173.3 224 45.5
Prupe.2G153200 Prunus persica HOM05D003667 ORTHO05D004397 2.1e-41 173.3 220 46.8
Hund10761 Selenicereus undatus HOM05D003667 ORTHO05D004397 2.7e-41 172.9 225 48.0
MD02G1195300 Malus domestica HOM05D003667 ORTHO05D004397 3.5e-41 172.6 219 45.7
arahy.Tifrunner.gnm1.ann1.FV18MX Arachis hypogaea HOM05D003667 ORTHO05D004397 6.0e-41 171.8 221 46.6
Phvul.006G027100 Phaseolus vulgaris HOM05D003667 ORTHO05D004397 6.0e-41 171.8 220 46.8
Sabra13G0056100 Salix brachista HOM05D003667 ORTHO05D004397 6.0e-41 171.8 223 46.2
Carub.0004s1876 Capsella rubella HOM05D003667 ORTHO05D004397 1.0e-40 171.0 219 43.4
Potri.013G062900 Populus trichocarpa HOM05D003667 ORTHO05D004397 1.0e-40 171.0 223 45.7
Glyma.08G304700 Glycine max HOM05D003667 ORTHO05D004397 1.3e-40 170.6 223 45.7
AT2G36900 Arabidopsis thaliana HOM05D003667 ORTHO05D004397 2.3e-40 169.9 221 42.5
arahy.Tifrunner.gnm1.ann1.7QGR70 Arachis hypogaea HOM05D003667 ORTHO05D004397 2.3e-40 169.9 221 46.6
CARHR131380 Cardamine hirsuta HOM05D003667 ORTHO05D004397 2.3e-40 169.9 220 44.5
arahy.Tifrunner.gnm1.ann1.VNW58P Arachis hypogaea HOM05D003667 ORTHO05D004397 5.1e-40 168.7 221 46.2
Ca_13917_v3 Cicer arietinum L. HOM05D003667 ORTHO05D004397 6.6e-40 168.3 223 44.4
Medtr3g450200 Medicago truncatula HOM05D003667 ORTHO05D004397 6.6e-40 168.3 223 45.3
Lalb_Chr17g0348151 Lupinus albus HOM05D003667 ORTHO05D004397 8.6e-40 167.9 221 46.2
AL4G33130 Arabidopsis lyrata HOM05D003667 ORTHO05D004397 1.5e-39 167.2 219 42.0
Lj2g0005685 Lotus japonicus HOM05D003667 ORTHO05D004397 3.3e-39 166.0 218 46.3
Glyma.18G114700 Glycine max HOM05D003667 ORTHO05D004397 5.6e-39 165.2 220 45.5
TPR.G8769 Trifolium pratense HOM05D003667 ORTHO05D004397 5.6e-39 165.2 218 44.5
TPR.G14738 Trifolium pratense HOM05D003667 ORTHO05D004397 7.3e-39 164.9 222 44.1
TWI38G1198 Tripterygium wilfordii HOM05D003667 ORTHO05D004397 9.6e-39 164.5 219 43.8
Sopen07g024170 Solanum pennellii HOM05D003667 ORTHO05D004397 1.2e-38 164.1 227 42.7
Oeu035461.1 Olea europaea HOM05D003667 ORTHO05D004397 2.1e-38 163.3 228 42.5
Psat5g209680 Pisum sativum HOM05D003667 ORTHO05D004397 2.1e-38 163.3 223 44.4
C04p11070 Brassica napus HOM05D003667 ORTHO05D004397 2.8e-38 162.9 219 42.5
BolC4t22755H Brassica oleracea HOM05D003667 ORTHO05D004397 2.8e-38 162.9 219 42.5
A05p08960 Brassica napus HOM05D003667 ORTHO05D004397 3.6e-38 162.5 219 42.5
Solyc07g047720.3 Solanum lycopersicum HOM05D003667 ORTHO05D004397 3.6e-38 162.5 229 41.9
THA.LOC104823778 Tarenaya hassleriana HOM05D003667 ORTHO05D004397 3.6e-38 162.5 224 42.4
BraA05t19858Z Brassica rapa HOM05D003667 ORTHO05D004397 4.7e-38 162.2 219 42.5
CiPaw.03G011100 Carya illinoinensis HOM05D003667 ORTHO05D004397 6.2e-38 161.8 217 46.1
Cpa.g.sc28.13 Carica papaya HOM05D003667 ORTHO05D004397 1.4e-37 160.6 224 42.0
PGSC0003DMG400006127 Solanum tuberosum HOM05D003667 ORTHO05D004397 1.8e-37 160.2 236 40.7
ECA238G3478 Erigeron canadensis HOM05D003667 ORTHO05D004397 2.4e-37 159.8 219 60.3
Thhalv10017208m.g Eutrema salsugineum HOM05D003667 ORTHO05D004397 2.4e-37 159.8 217 40.6
Sp4g19200 Schrenkiella parvula HOM05D003667 ORTHO05D004397 2.4e-37 159.8 219 40.6
Thhalv10014611m.g Eutrema salsugineum HOM05D003667 ORTHO05D004397 3.1e-37 159.5 221 41.2
AUR62008662 Chenopodium quinoa HOM05D003667 ORTHO05D004397 4.0e-37 159.1 219 61.2
VMungo0540G2144 Vigna mungo HOM05D003667 ORTHO05D004397 5.2e-37 158.7 212 44.8
Aa31LG6G14320 Aethionema arabicum HOM05D003667 ORTHO05D004397 1.5e-36 157.1 223 41.3
BcaB02g09321 Brassica carinata HOM05D003667 ORTHO05D004397 1.5e-36 157.1 218 40.8
CAN.G992.19 Capsicum annuum HOM05D003667 ORTHO05D004397 2.0e-36 156.8 233 41.2
Zm00001eb052810 Zea mays HOM05D003667 ORTHO05D004397 2.0e-36 156.8 229 41.0
Haze_14026 Corylus avellana HOM05D003667 ORTHO05D004397 2.6e-36 156.4 216 45.4
Medtr5g090520 Medicago truncatula HOM05D003667 ORTHO05D004397 2.6e-36 156.4 219 43.4
PGSC0003DMG400018832 Solanum tuberosum HOM05D003667 ORTHO05D004397 5.8e-36 155.2 228 42.1
Carub.0008s1055 Capsella rubella HOM05D003667 ORTHO05D004397 1.3e-35 154.1 217 40.1
Nitab4.5_0001774g0040 Nicotiana tabacum HOM05D003667 ORTHO05D004397 1.3e-35 154.1 233 39.9
SEGI_40073 Sequoiadendron giganteum HOM05D003667 ORTHO05D004397 1.7e-35 153.7 229 40.2
AL8G24670 Arabidopsis lyrata HOM05D003667 ORTHO05D004397 2.2e-35 153.3 217 41.0
CARHR257860 Cardamine hirsuta HOM05D003667 ORTHO05D004397 2.2e-35 153.3 217 40.6
Os03g0655200 Oryza sativa ssp. japonica HOM05D003667 ORTHO05D004397 2.2e-35 153.3 228 40.4
AT5G50440 Arabidopsis thaliana HOM05D003667 ORTHO05D004397 3.8e-35 152.5 217 40.6
MSTRG.26557 Avicennia marina HOM05D003667 ORTHO05D004397 3.2e-34 149.4 229 41.9
Ca_06238_v3 Cicer arietinum L. HOM05D003667 ORTHO05D004397 3.2e-34 149.4 218 42.2
Psat2g018160 Pisum sativum HOM05D003667 ORTHO05D004397 7.1e-34 148.3 218 40.8
Dinv25059 Davidia involucrata HOM05D003667 ORTHO05D004397 9.3e-34 147.9 117 65.0
Nitab4.5_0001741g0020 Nicotiana tabacum HOM05D003667 ORTHO05D004397 9.3e-34 147.9 228 40.8
Migut.L01870 Erythranthe guttata HOM05D003667 ORTHO05D004397 7.8e-33 144.8 230 39.6
EL10Ac7g17477 Beta vulgaris HOM05D003667 ORTHO05D004397 1.0e-32 144.4 220 56.8
SMO358G0442 Selaginella moellendorffii HOM05D003667 ORTHO05D004397 1.7e-32 143.7 227 39.2
HPP92_027259 Vanilla planifolia HOM05D003667 ORTHO05D004397 3.9e-32 142.5 183 45.9
Cc03_g11050 Coffea canephora HOM05D003667 ORTHO05D004397 8.7e-32 141.4 221 41.6
Mapoly0001s0234 Marchantia polymorpha HOM05D003667 ORTHO05D004397 1.1e-31 141.0 215 40.0
Sc01g0006150 Simmondsia chinensis HOM05D003667 ORTHO05D004397 1.5e-31 140.6 123 60.2
Dinv05568 Davidia involucrata HOM05D003667 ORTHO05D004397 1.9e-31 140.2 117 61.5
SGA_v2.0_scaffold392G50657 Striga asiatica HOM05D003667 ORTHO05D004397 1.8e-29 133.7 252 36.5
Ah.02g128310 Amaranthus hybridus HOM05D003667 ORTHO05D004397 4.5e-28 129.0 116 62.1
SGA_v2.0_scaffold41G15803 Striga asiatica HOM05D003667 ORTHO05D004397 1.7e-27 127.1 272 34.6
unitig_8.g4943 Utricularia gibba HOM05D003667 ORTHO05D004397 8.4e-27 124.8 223 36.8
Peaxi162Scf00776g00027 Petunia axillaris HOM05D003667 ORTHO05D004397 2.4e-26 123.2 214 38.3
Pp3c7_13000 Physcomitrium patens HOM05D003667 ORTHO05D004397 2.4e-26 123.2 242 34.7
Pp3c11_11980 Physcomitrium patens HOM05D003667 ORTHO05D004397 9.3e-26 121.3 239 33.1
DCAR_013483 Daucus carota HOM05D003667 ORTHO05D004397 1.0e-24 117.9 160 43.8
BcaC02g11814 Brassica carinata HOM05D003667 ORTHO05D004397 8.7e-24 114.8 160 41.2
Prupe.7G022400 Prunus persica HOM05D003667 ORTHO05D004397 1.9e-23 113.6 161 42.9
CiPaw.04G007600 Carya illinoinensis HOM05D003667 ORTHO05D004397 1.1e-21 107.8 160 42.5
Oeu063104.1 Olea europaea HOM05D003667 ORTHO05D004397 9.0e-21 104.8 231 35.5
Lj6g0022641 Lotus japonicus HOM05D003667 ORTHO05D004397 9.9e-20 101.3 152 43.4
Rhsim02G0194700 Rhododendron simsii HOM05D003667 ORTHO05D004397 1.1e-18 97.8 78 66.7
Rhsim02G0195800 Rhododendron simsii HOM05D003667 ORTHO05D004397 1.1e-18 97.8 78 66.7
Cre12.g554200 Chlamydomonas reinhardtii HOM05D003667 ORTHO05D004397 5.5e-18 95.5 221 29.4
arahy.Tifrunner.gnm1.ann1.B982CP Arachis hypogaea HOM05D003667 ORTHO05D004397 2.7e-17 93.2 221 31.7
AagrBONN_evm.TU.Sc2ySwM_117.3822 Anthoceros agrestis HOM05D003667 ORTHO05D004397 1.0e-16 91.3 124 44.4
Rhsim02G0195900 Rhododendron simsii HOM05D003667 ORTHO05D004397 1.3e-16 90.9 141 40.4
AagrBONN_evm.TU.Sc2ySwM_362.869 Anthoceros agrestis HOM05D003667 ORTHO05D004397 1.8e-16 90.5 130 43.1
arahy.Tifrunner.gnm1.ann1.835HL2 Arachis hypogaea HOM05D004313 ORTHO05D004397 2.3e-16 90.1 93 51.6
AagrBONN_evm.TU.Sc2ySwM_368.3326 Anthoceros agrestis HOM05D003667 ORTHO05D004397 3.0e-16 89.7 130 42.3
CSS0038188 Camellia sinensis var. sinensis HOM05D003667 ORTHO05D004397 1.3e-14 84.3 77 55.8
MSTRG.10431 Avicennia marina HOM05D003667 ORTHO05D004397 6.2e-14 82.0 142 35.9
arahy.Tifrunner.gnm1.ann1.SJAT5A Arachis hypogaea HOM05D003667 ORTHO05D003672 4.0e-13 79.3 93 48.4
arahy.Tifrunner.gnm1.ann1.SS7A45 Arachis hypogaea HOM05D000726 ORTHO05D004397 5.3e-13 79.0 80 55.0
BcaB06g28959 Brassica carinata HOM05D003667 ORTHO05D004397 2.0e-12 77.0 216 29.2
PRCOL_00002098 Prasinoderma coloniale HOM05D003667 ORTHO05D004397 3.4e-12 76.3 217 28.1
Lalb_Chr10g0106511 Lupinus albus HOM05D003667 ORTHO05D004397 1.7e-11 73.9 82 51.2
MCO05G601 Micromonas commoda HOM05D003667 ORTHO05D004397 2.2e-11 73.6 214 23.4
Nitab4.5_0002669g0010 Nicotiana tabacum HOM05D003667 ORTHO05D004397 2.2e-11 73.6 114 38.6
Haze_20440 Corylus avellana HOM05D003667 ORTHO05D004397 1.1e-10 71.2 50 64.0
FAN16G1288 Fragaria x ananassa HOM05D003667 ORTHO05D004397 1.9e-10 70.5 47 70.2
BolC4t28047H Brassica oleracea HOM05D003667 ORTHO05D004397 2.5e-10 70.1 47 66.0
BraA04t18306Z Brassica rapa HOM05D003667 ORTHO05D004397 2.5e-10 70.1 47 66.0
Cfa017699 Carpinus fangiana HOM05D003667 ORTHO05D004397 2.5e-10 70.1 50 62.0
Lalb_Chr10g0106501 Lupinus albus HOM05D003667 ORTHO05D004397 2.5e-10 70.1 47 68.1
BcaC02g10601 Brassica carinata HOM05D003667 ORTHO05D004397 3.2e-10 69.7 186 29.0
Ah.08g213170 Amaranthus hybridus HOM05D003667 ORTHO05D004397 5.5e-10 68.9 79 45.6
A04p28220 Brassica napus HOM05D003667 ORTHO05D004397 2.1e-09 67.0 47 63.8
C04p65580 Brassica napus HOM05D003667 ORTHO05D004397 2.1e-09 67.0 47 63.8
arahy.Tifrunner.gnm1.ann1.K13S6W Arachis hypogaea HOM05D004599 ORTHO05D005564 1.0e-08 64.7 117 39.3
TPR.G36075 Trifolium pratense HOM05D003667 ORTHO05D004397 1.8e-08 63.9 47 63.8
Oeu003870.1 Olea europaea HOM05D003667 ORTHO05D004397 2.3e-08 63.5 75 49.3
Glyma.02G282800 Glycine max HOM05D003667 ORTHO05D004397 3.9e-08 62.8 47 63.8
CAN.G1036.8 Capsicum annuum HOM05D003667 ORTHO05D004397 5.1e-08 62.4 127 33.9
Nitab4.5_0001701g0060 Nicotiana tabacum HOM05D003667 ORTHO05D004397 5.1e-08 62.4 224 28.1
Solyc05g040100.4 Solanum lycopersicum HOM05D003667 ORTHO05D004397 5.1e-08 62.4 48 58.3
unitig_578.g16057 Utricularia gibba HOM05D003667 ORTHO05D004397 5.1e-08 62.4 142 32.4
AUR62033107 Chenopodium quinoa HOM05D003667 ORTHO05D004397 4.3e-07 59.3 47 59.6
FvH4_3g32534 Fragaria vesca HOM05D003667 ORTHO05D004397 3.7e-06 56.2 55 60.0


User provided reference genes

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