Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE10G0932 Ceratophyllum demersum HOM05D007093 ORTHO05D008910 3.5e-141 505.8 443 100.0
TAR622G0743 Trochodendron aralioides HOM05D007093 ORTHO05D008910 1.4e-60 238.0 188 62.2
Nn4g23352 Nelumbo nucifera HOM05D007093 ORTHO05D008910 3.4e-56 223.4 193 56.5
Dinv11483 Davidia involucrata HOM05D007093 ORTHO05D008910 1.9e-54 217.6 193 54.4
Sabra17G0079700 Salix brachista HOM05D007093 ORTHO05D008910 1.9e-54 217.6 193 57.0
MD09G1077000 Malus domestica HOM05D007093 ORTHO05D008910 2.5e-54 217.2 189 57.1
Duzib147G1133 Durio zibethinus HOM05D007093 ORTHO05D008910 4.2e-54 216.5 193 55.4
PGR042G3371 Punica granatum HOM05D007093 ORTHO05D008910 9.4e-54 215.3 223 49.3
FAN09G1105 Fragaria x ananassa HOM05D007093 ORTHO05D008910 2.1e-53 214.2 189 56.6
CiPaw.04G051100 Carya illinoinensis HOM05D007093 ORTHO05D008910 2.7e-53 213.8 196 53.1
FvH4_6g46090 Fragaria vesca HOM05D007093 ORTHO05D008910 4.7e-53 213.0 189 56.6
RcHm_v2.0_Chr2g0164431 Rosa chinensis HOM05D007093 ORTHO05D008910 4.7e-53 213.0 189 56.1
FAN05G3563 Fragaria x ananassa HOM05D007093 ORTHO05D008910 6.1e-53 212.6 189 56.6
Zm00001eb008430 Zea mays HOM05D007093 ORTHO05D008910 1.4e-52 211.5 193 51.8
Cfa007712 Carpinus fangiana HOM05D007093 ORTHO05D008910 1.8e-52 211.1 208 49.5
Os03g0211600 Oryza sativa ssp. japonica HOM05D007093 ORTHO05D008910 2.3e-52 210.7 193 51.8
Peaxi162Scf00166g00640 Petunia axillaris HOM05D007093 ORTHO05D008910 3.0e-52 210.3 191 54.5
FAN02G0988 Fragaria x ananassa HOM05D007093 ORTHO05D008910 3.9e-52 209.9 189 55.6
Oeu000638.1 Olea europaea HOM05D007093 ORTHO05D008910 3.9e-52 209.9 192 54.2
TWI60G1187 Tripterygium wilfordii HOM05D007093 ORTHO05D008910 3.9e-52 209.9 209 51.7
Cc07_g04020 Coffea canephora HOM05D007093 ORTHO05D008910 8.8e-52 208.8 193 53.4
CSS0026118 Camellia sinensis var. sinensis HOM05D007093 ORTHO05D008910 1.1e-51 208.4 218 49.1
CANSAT64G0836 Cannabis sativa HOM05D007093 ORTHO05D008910 3.3e-51 206.8 209 51.7
Haze_14367 Corylus avellana HOM05D007093 ORTHO05D008910 3.3e-51 206.8 202 50.0
unitig_899.g15158 Utricularia gibba HOM05D007093 ORTHO05D008910 3.3e-51 206.8 230 46.1
Ciclev10011344m.g Citrus clementina HOM05D007093 ORTHO05D008910 4.4e-51 206.5 202 52.0
Manes.02G051500 Manihot esculenta HOM05D007093 ORTHO05D008910 4.4e-51 206.5 180 56.1
DCAR_005548 Daucus carota HOM05D007093 ORTHO05D008910 5.7e-51 206.1 192 54.2
Carub.0005s0800 Capsella rubella HOM05D007093 ORTHO05D008910 9.7e-51 205.3 193 55.4
Potri.017G090500 Populus trichocarpa HOM05D007093 ORTHO05D008910 1.7e-50 204.5 179 57.0
SalBow1G5933 Salvia bowleyana HOM05D007093 ORTHO05D008910 2.8e-50 203.8 193 52.3
Sp2g17890 Schrenkiella parvula HOM05D007093 ORTHO05D008910 2.8e-50 203.8 193 53.9
Gorai.006G011900 Gossypium raimondii HOM05D007093 ORTHO05D008910 3.7e-50 203.4 221 48.4
PSO478G5205 Papaver somniferum HOM05D007093 ORTHO05D008910 4.8e-50 203.0 193 50.8
TPR.G3254 Trifolium pratense HOM05D007093 ORTHO05D008910 4.8e-50 203.0 191 53.4
Thecc.04G091300 Theobroma cacao HOM05D007093 ORTHO05D008910 6.3e-50 202.6 179 55.9
Thhalv10003982m.g Eutrema salsugineum HOM05D007093 ORTHO05D008910 8.2e-50 202.2 193 53.9
Atru.chr6.1376 Acer truncatum HOM05D007093 ORTHO05D008910 1.1e-49 201.8 200 50.0
Medtr7g017610 Medicago truncatula HOM05D007093 ORTHO05D008910 1.4e-49 201.4 189 51.9
vmacro19123 Vaccinium macrocarpon HOM05D007093 ORTHO05D008910 1.4e-49 201.4 193 51.3
PSO017G2846 Papaver somniferum HOM05D007093 ORTHO05D008910 1.8e-49 201.1 193 50.3
Phvul.008G024300 Phaseolus vulgaris HOM05D007093 ORTHO05D008910 1.8e-49 201.1 189 52.9
GSVIVG01011494001 Vitis vinifera HOM05D007093 ORTHO05D008910 4.1e-49 199.9 179 55.3
Zm00001eb408510 Zea mays HOM05D007093 ORTHO05D008910 5.3e-49 199.5 193 50.3
Gohir.D09G010300 Gossypium hirsutum HOM05D007093 ORTHO05D008910 9.1e-49 198.7 221 48.0
Rhsim10G0045200 Rhododendron simsii HOM05D007093 ORTHO05D008910 1.2e-48 198.4 219 48.4
CAN.G206.202 Capsicum annuum HOM05D007093 ORTHO05D008910 2.6e-48 197.2 218 48.6
CARHR153970 Cardamine hirsuta HOM05D007093 ORTHO05D008910 3.5e-48 196.8 222 50.0
Cpa.g.sc14.149 Carica papaya HOM05D007093 ORTHO05D008910 3.5e-48 196.8 217 48.4
AL5G19290 Arabidopsis lyrata HOM05D007093 ORTHO05D008910 4.5e-48 196.4 220 48.6
ClCG11G005040 Citrullus lanatus HOM05D007093 ORTHO05D008910 5.9e-48 196.1 218 47.7
MSTRG.3018 Avicennia marina HOM05D007093 ORTHO05D008910 7.7e-48 195.7 204 48.0
BcaB07g30086 Brassica carinata HOM05D007093 ORTHO05D008910 7.7e-48 195.7 196 51.0
QL09p029458 Quercus lobata HOM05D007093 ORTHO05D008910 7.7e-48 195.7 212 50.9
ATR0064G018 Amborella trichopoda HOM05D007093 ORTHO05D008910 1.3e-47 194.9 218 45.0
Nitab4.5_0000565g0100 Nicotiana tabacum HOM05D007093 ORTHO05D008910 1.3e-47 194.9 204 49.0
Gohir.A09G011300 Gossypium hirsutum HOM05D007093 ORTHO05D008910 2.2e-47 194.1 217 47.5
VMungo1383G0771 Vigna mungo HOM05D007093 ORTHO05D008910 2.9e-47 193.7 189 49.7
Ca_06961_v3 Cicer arietinum L. HOM05D007093 ORTHO05D008910 3.8e-47 193.4 189 49.2
AT3G29290 Arabidopsis thaliana HOM05D007093 ORTHO05D008910 5.0e-47 193.0 193 51.8
Glyma.08G254100 Glycine max HOM05D007093 ORTHO05D008910 6.5e-47 192.6 214 46.3
QL09p029436 Quercus lobata HOM05D007093 ORTHO05D008910 6.5e-47 192.6 212 49.1
Lj1g0021235 Lotus japonicus HOM05D007093 ORTHO05D008910 8.5e-47 192.2 189 51.3
MELO3C022059.2 Cucumis melo HOM05D007093 ORTHO05D008910 1.5e-46 191.4 193 51.3
Aa31LG10G7310 Aethionema arabicum HOM05D007093 ORTHO05D006741 4.2e-46 189.9 193 52.3
Sopen02g033330 Solanum pennellii HOM05D007093 ORTHO05D008910 4.2e-46 189.9 196 51.0
Sc10g0003260 Simmondsia chinensis HOM05D007093 ORTHO05D008910 5.5e-46 189.5 231 46.3
Psat3g194440 Pisum sativum HOM05D007093 ORTHO05D008910 7.2e-46 189.1 193 47.7
C02p55490 Brassica napus HOM05D007093 ORTHO05D008910 9.4e-46 188.7 226 46.5
BolC2t11605H Brassica oleracea HOM05D007093 ORTHO05D008910 9.4e-46 188.7 226 46.5
A06p39990 Brassica napus HOM05D007093 ORTHO05D008910 1.2e-45 188.3 192 49.5
BraA06t26914Z Brassica rapa HOM05D007093 ORTHO05D008910 1.2e-45 188.3 192 49.5
CsaV3_5G038790 Cucumis sativus L. HOM05D007093 ORTHO05D008910 1.2e-45 188.3 218 46.3
AUR62042568 Chenopodium quinoa HOM05D007093 ORTHO05D008910 4.7e-45 186.4 194 49.0
BcaC06g33684 Brassica carinata HOM05D007093 ORTHO05D008910 5.2e-44 183.0 179 52.5
BolC7t44340H Brassica oleracea HOM05D007093 ORTHO05D008910 1.1e-43 181.8 186 50.5
C07p38180 Brassica napus HOM05D007093 ORTHO05D008910 4.4e-43 179.9 179 52.0
Glyma.18G276600 Glycine max HOM05D007093 ORTHO05D008910 4.4e-43 179.9 173 52.6
Lalb_Chr10g0092581 Lupinus albus HOM05D007093 ORTHO05D008910 2.8e-42 177.2 175 50.3
arahy.Tifrunner.gnm1.ann1.H8YVTX Arachis hypogaea HOM05D007093 ORTHO05D008910 4.8e-42 176.4 175 50.9
arahy.Tifrunner.gnm1.ann1.T191C4 Arachis hypogaea HOM05D007093 ORTHO05D008910 6.3e-42 176.0 172 51.7
COL.COLO4_21381 Corchorus olitorius HOM05D007093 ORTHO05D008910 6.3e-42 176.0 164 50.0
SGA_v2.0_scaffold52G19185 Striga asiatica HOM05D007093 ORTHO05D008910 8.2e-42 175.6 168 51.8
AUR62018158 Chenopodium quinoa HOM05D007093 ORTHO05D008910 5.3e-41 172.9 180 48.9
THA.LOC104805501 Tarenaya hassleriana HOM05D007093 ORTHO05D008910 2.9e-39 167.2 159 56.6
Sed0021178 Sechium edule HOM05D007093 ORTHO05D008910 8.5e-39 165.6 197 43.7
Lsat_1_v5_gn_2_87781 Lactuca sativa HOM05D007093 ORTHO05D008910 1.5e-38 164.9 222 39.6
HanXRQChr07g0199471 Helianthus annuus HOM05D007093 ORTHO05D008910 2.1e-37 161.0 195 41.5
Ah.10g031960 Amaranthus hybridus HOM05D007093 ORTHO05D008910 3.6e-37 160.2 180 45.6
SEGI_28807 Sequoiadendron giganteum HOM05D007093 ORTHO05D008910 8.0e-37 159.1 186 43.5
Solyc02g088600.4 Solanum lycopersicum HOM05D007093 ORTHO05D008910 4.0e-36 156.8 180 49.4
PGSC0003DMG400001354 Solanum tuberosum HOM05D007093 ORTHO05D008910 6.8e-36 156.0 184 46.7
Migut.H00649 Erythranthe guttata HOM05D007093 ORTHO05D008910 2.6e-35 154.1 157 51.0
Nitab4.5_0008213g0020 Nicotiana tabacum HOM05D007093 ORTHO05D008910 3.4e-35 153.7 173 46.2
Eucgr.J01427 Eucalyptus grandis HOM05D007093 ORTHO05D008910 1.1e-33 148.7 143 50.3
Lj4A116G82 Lonicera japonica HOM05D007093 ORTHO05D008910 2.2e-31 141.0 135 48.9
Actinidia07826 Actinidia chinensis HOM05D007093 ORTHO05D008910 2.5e-30 137.5 217 38.2
ECA238G1523 Erigeron canadensis HOM05D007093 ORTHO05D008910 6.1e-29 132.9 229 34.1
EL10Ac2g03091 Beta vulgaris HOM05D007093 ORTHO05D008910 1.4e-28 131.7 194 39.7
RcHm_v2.0_Chr2g0164471 Rosa chinensis HOM05D007093 ORTHO05D008910 5.2e-28 129.8 107 57.9
Prupe.3G247100 Prunus persica HOM05D007093 ORTHO05D008910 2.0e-27 127.9 189 41.3
Hund16566 Selenicereus undatus HOM05D000001 ORTHO05D010372 5.4e-09 66.6 151 27.8
C02p55430 Brassica napus HOM05D007093 ORTHO05D008910 1.3e-07 62.0 49 49.0
BolC2t11599H Brassica oleracea HOM05D007093 ORTHO05D008910 1.3e-07 62.0 49 49.0
Medtr2g007030 Medicago truncatula HOM05D007322 ORTHO05D009029 2.3e-07 61.2 174 24.7
arahy.Tifrunner.gnm1.ann1.BYDN2S Arachis hypogaea HOM05D007322 ORTHO05D009029 3.9e-07 60.5 164 23.8
arahy.Tifrunner.gnm1.ann1.YY4I9I Arachis hypogaea HOM05D007322 ORTHO05D009029 3.9e-07 60.5 164 23.8
ECA247G0464 Erigeron canadensis HOM05D006232 ORTHO05D007746 5.0e-07 60.1 126 26.2
CANSAT78G0097 Cannabis sativa HOM05D008684 ORTHO05D010796 8.6e-07 59.3 166 26.5
CiPaw.10G023600 Carya illinoinensis HOM05D000001 ORTHO05D000003 8.6e-07 59.3 188 25.5
BcaC03g17570 Brassica carinata HOM05D007093 ORTHO05D008910 1.1e-06 58.9 60 48.3
BcaNung04765 Brassica carinata HOM05D007322 ORTHO05D009029 1.1e-06 58.9 143 26.6
Psat3g112040 Pisum sativum HOM05D000001 ORTHO05D010372 1.1e-06 58.9 182 24.2
BraA06t23970Z Brassica rapa HOM05D007322 ORTHO05D009029 1.9e-06 58.2 143 26.6
PGR083G2327 Punica granatum HOM05D000001 ORTHO05D010525 1.9e-06 58.2 188 25.5
TAR623G0872 Trochodendron aralioides HOM05D000001 ORTHO05D013582 1.9e-06 58.2 145 28.3
AagrBONN_evm.TU.Sc2ySwM_369.227 Anthoceros agrestis HOM05D000001 ORTHO05D000003 2.5e-06 57.8 167 26.3
MSTRG.2924 Avicennia marina HOM05D000001 ORTHO05D010372 2.5e-06 57.8 177 26.6
Thhalv10003720m.g Eutrema salsugineum HOM05D000001 ORTHO05D000003 2.5e-06 57.8 178 28.7
GSVIVG01024915001 Vitis vinifera HOM05D000001 ORTHO05D009726 2.5e-06 57.8 184 26.6
SMO361G0319 Selaginella moellendorffii HOM05D005362 ORTHO05D010796 3.3e-06 57.4 171 26.9
AL8G43172 Arabidopsis lyrata HOM05D000001 ORTHO05D000003 4.3e-06 57.0 180 29.4
Ciclev10027602m.g Citrus clementina HOM05D000001 ORTHO05D009948 4.3e-06 57.0 151 25.2
Lj6C59T5 Lonicera japonica HOM05D008684 ORTHO05D010796 4.3e-06 57.0 167 24.6
TAR560G0001 Trochodendron aralioides HOM05D000001 ORTHO05D013582 4.3e-06 57.0 145 27.6
Aa31LG7G7470 Aethionema arabicum HOM05D000001 ORTHO05D000648 5.6e-06 56.6 171 25.7
AagrBONN_evm.TU.Sc2ySwM_362.1201 Anthoceros agrestis HOM05D000001 ORTHO05D000003 7.3e-06 56.2 153 22.9
Psat5g083600 Pisum sativum HOM05D000001 ORTHO05D009739 9.5e-06 55.8 174 24.7
SalBow1G1035 Salvia bowleyana HOM05D000001 ORTHO05D009236 9.5e-06 55.8 134 32.8
Sc11g0008700 Simmondsia chinensis HOM05D000001 ORTHO05D013996 9.5e-06 55.8 168 25.0
Sc19g0006870 Simmondsia chinensis HOM05D000001 ORTHO05D000003 9.5e-06 55.8 134 28.4


User provided reference genes

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