Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE10G0926 Ceratophyllum demersum HOM05D003962 ORTHO05D004714 0.0e+00 1798.9 932 100.0
CDE10G1062 Ceratophyllum demersum HOM05D003962 ORTHO05D004714 0.0e+00 1417.9 859 87.0
MBI07_g07101_MAGBIO Magnolia biondii HOM05D003962 ORTHO05D004714 6.1e-55 220.3 1050 30.0
TAR374G0911 Trochodendron aralioides HOM05D003962 ORTHO05D004714 8.0e-55 219.9 981 29.7
TAR629G3347 Trochodendron aralioides HOM05D003962 ORTHO05D004714 2.6e-53 214.9 611 32.4
Nn1g01866 Nelumbo nucifera HOM05D003962 ORTHO05D004714 2.8e-52 211.5 1004 28.9
GSVIVG01019537001 Vitis vinifera HOM05D003962 ORTHO05D005685 2.4e-51 208.4 1010 29.5
Nn3g19007 Nelumbo nucifera HOM05D003962 ORTHO05D004714 5.4e-51 207.2 1075 27.8
Aqoxy7G00097 Aquilegia oxysepala HOM05D003962 ORTHO05D004714 1.2e-50 206.1 1000 29.0
MBI06_g08468_MAGBIO Magnolia biondii HOM05D003962 ORTHO05D004714 1.3e-49 202.6 741 30.8
TAR636G0021 Trochodendron aralioides HOM05D003962 ORTHO05D004714 1.3e-49 202.6 1030 28.2
PSO170G0250 Papaver somniferum HOM05D003962 ORTHO05D004714 1.5e-48 199.1 987 28.1
Dinv38828 Davidia involucrata HOM05D003962 ORTHO05D004714 2.1e-47 195.3 1082 26.4
CSS0043367 Camellia sinensis var. sinensis HOM05D003962 ORTHO05D004714 3.4e-45 188.0 682 28.2
TAR375G1139 Trochodendron aralioides HOM05D003962 ORTHO05D004714 3.4e-45 188.0 474 32.5
Dinv37529 Davidia involucrata HOM05D003962 ORTHO05D004714 5.8e-45 187.2 760 28.6
PSO063G5170 Papaver somniferum HOM05D003962 ORTHO05D004714 5.8e-45 187.2 998 27.2
CSS0016674 Camellia sinensis var. sinensis HOM05D003962 ORTHO05D004714 1.7e-44 185.7 546 30.0
Peaxi162Scf00074g00821 Petunia axillaris HOM05D003962 ORTHO05D004714 1.4e-43 182.6 722 27.6
Hma1.2p1_0359F.1_g135210 Hydrangea macrophylla HOM05D003962 ORTHO05D004714 9.2e-43 179.9 646 28.6
Sabra12G0018000 Salix brachista HOM05D003962 ORTHO05D004714 1.2e-42 179.5 607 29.7
Prupe.2G311300 Prunus persica HOM05D003962 ORTHO05D004714 3.5e-42 177.9 537 30.9
Thecc.03G196300 Theobroma cacao HOM05D003962 ORTHO05D004714 6.0e-42 177.2 688 30.8
Actinidia04199 Actinidia chinensis HOM05D003962 ORTHO05D004714 1.7e-41 175.6 611 29.6
Potri.012G013800 Populus trichocarpa HOM05D003962 ORTHO05D004714 6.6e-41 173.7 615 29.4
DCAR_029893 Daucus carota HOM05D003962 ORTHO05D004714 8.6e-41 173.3 693 27.4
Cc08_g16110 Coffea canephora HOM05D003962 ORTHO05D004714 1.5e-40 172.6 706 28.6
Haze_00190 Corylus avellana HOM05D003962 ORTHO05D004714 1.9e-40 172.2 518 28.4
GSVIVG01038709001 Vitis vinifera HOM05D003962 ORTHO05D004714 1.9e-40 172.2 594 29.1
MD01G1219900 Malus domestica HOM05D003962 ORTHO05D004714 3.3e-40 171.4 604 29.8
SalBow1G2835 Salvia bowleyana HOM05D003962 ORTHO05D004714 5.6e-40 170.6 530 29.8
SalBow1G4038 Salvia bowleyana HOM05D003962 ORTHO05D004714 5.6e-40 170.6 530 29.8
CiPaw.05G251700 Carya illinoinensis HOM05D003962 ORTHO05D004714 2.8e-39 168.3 602 29.4
QL09p009481 Quercus lobata HOM05D003962 ORTHO05D004714 4.7e-39 167.5 516 30.0
Nitab4.5_0007367g0070 Nicotiana tabacum HOM05D003962 ORTHO05D004714 6.2e-39 167.2 574 28.9
CAN.G1804.9 Capsicum annuum HOM05D003962 ORTHO05D004714 1.4e-38 166.0 667 28.3
CSS0006905 Camellia sinensis var. sinensis HOM05D003962 ORTHO05D004714 3.1e-38 164.9 417 32.6
Cpa.g.sc3.71 Carica papaya HOM05D003962 ORTHO05D004714 3.1e-38 164.9 598 30.9
Gohir.A11G014600 Gossypium hirsutum HOM05D003962 ORTHO05D004714 3.1e-38 164.9 607 30.8
MD07G1290200 Malus domestica HOM05D003962 ORTHO05D004714 4.0e-38 164.5 603 30.2
Gohir.D11G014700 Gossypium hirsutum HOM05D003962 ORTHO05D004714 1.2e-37 162.9 616 31.2
Manes.14G006600 Manihot esculenta HOM05D003962 ORTHO05D004714 1.2e-37 162.9 687 27.8
Solyc08g082410.4 Solanum lycopersicum HOM05D003962 ORTHO05D004714 2.0e-37 162.2 708 29.0
Gohir.A11G014500 Gossypium hirsutum HOM05D003962 ORTHO05D004714 2.6e-37 161.8 587 31.7
RcHm_v2.0_Chr1g0380961 Rosa chinensis HOM05D003962 ORTHO05D004714 3.4e-37 161.4 614 29.5
Sabra15G0011900 Salix brachista HOM05D003962 ORTHO05D004714 3.4e-37 161.4 614 27.9
PGSC0003DMG400012278 Solanum tuberosum HOM05D003962 ORTHO05D004714 3.4e-37 161.4 708 29.1
Nitab4.5_0002944g0030 Nicotiana tabacum HOM05D003962 ORTHO05D004714 5.8e-37 160.6 635 28.0
Potri.015G014800 Populus trichocarpa HOM05D003962 ORTHO05D004714 9.8e-37 159.8 617 28.5
Duzib084G0525 Durio zibethinus HOM05D003962 ORTHO05D004714 1.3e-36 159.5 638 30.3
Duzib205G1416 Durio zibethinus HOM05D003962 ORTHO05D004714 6.4e-36 157.1 673 29.7
FAN10G3613 Fragaria x ananassa HOM05D003962 ORTHO05D004714 8.3e-36 156.8 598 28.4
Gorai.007G015100 Gossypium raimondii HOM05D003962 ORTHO05D004714 8.3e-36 156.8 452 33.2
Gorai.007G015000 Gossypium raimondii HOM05D003962 ORTHO05D004714 1.1e-35 156.4 645 31.2
Zm00001eb359440 Zea mays HOM05D003962 ORTHO05D004714 1.4e-35 156.0 735 27.2
FAN06G4429 Fragaria x ananassa HOM05D003962 ORTHO05D004714 3.2e-35 154.8 603 28.4
FAN06G4230 Fragaria x ananassa HOM05D003962 ORTHO05D004714 4.1e-35 154.5 603 28.4
CiPaw.06G010000 Carya illinoinensis HOM05D003962 ORTHO05D004714 7.1e-35 153.7 586 28.3
Actinidia22731 Actinidia chinensis HOM05D003962 ORTHO05D004714 1.2e-34 152.9 603 27.2
Actinidia27315 Actinidia chinensis HOM05D003962 ORTHO05D004714 2.1e-34 152.1 524 27.7
FAN03G1461 Fragaria x ananassa HOM05D003962 ORTHO05D004714 2.7e-34 151.8 593 28.2
MSTRG.25678 Avicennia marina HOM05D003962 ORTHO05D004714 3.5e-34 151.4 658 27.1
Ciclev10004179m.g Citrus clementina HOM05D003962 ORTHO05D004714 7.8e-34 150.2 641 27.3
Atru.chr1.164 Acer truncatum HOM05D003962 ORTHO05D004714 1.3e-33 149.4 633 28.6
Duzib068G0757 Durio zibethinus HOM05D003962 ORTHO05D004714 1.3e-33 149.4 700 30.1
FvH4_7g31740 Fragaria vesca HOM05D003962 ORTHO05D004714 1.7e-33 149.1 676 27.8
FAN10G2253 Fragaria x ananassa HOM05D003962 ORTHO05D004714 1.7e-33 149.1 668 27.8
Gohir.D11G014600 Gossypium hirsutum HOM05D003962 ORTHO05D004714 3.9e-33 147.9 675 28.6
TWI39G0414 Tripterygium wilfordii HOM05D003962 ORTHO05D004714 3.9e-33 147.9 553 29.8
PSO384G0521 Papaver somniferum HOM05D003962 ORTHO05D004714 6.6e-33 147.1 684 28.4
Cfa016250 Carpinus fangiana HOM05D003962 ORTHO05D004714 8.6e-33 146.7 639 27.2
FAN01G0781 Fragaria x ananassa HOM05D003962 ORTHO05D004714 8.6e-33 146.7 590 28.5
Rhsim02G0244100 Rhododendron simsii HOM05D003962 ORTHO05D004714 1.1e-32 146.4 642 27.7
PSO135G0074 Papaver somniferum HOM05D003962 ORTHO05D004714 1.5e-32 146.0 682 27.0
TWI23G0430 Tripterygium wilfordii HOM05D003962 ORTHO05D004714 1.9e-32 145.6 691 27.8
TWI14G0330 Tripterygium wilfordii HOM05D003962 ORTHO05D004714 3.3e-32 144.8 641 28.1
THA.LOC104800296 Tarenaya hassleriana HOM05D003962 ORTHO05D004714 5.6e-32 144.1 631 27.4
vmacro11361 Vaccinium macrocarpon HOM05D003962 ORTHO05D004714 7.3e-32 143.7 426 31.2
COL.COLO4_11264 Corchorus olitorius HOM05D003962 ORTHO05D004714 9.5e-32 143.3 935 27.5
vmacro11467 Vaccinium macrocarpon HOM05D003962 ORTHO05D004714 1.6e-31 142.5 640 27.7
CANSAT21G2091 Cannabis sativa HOM05D003962 ORTHO05D004714 2.8e-31 141.7 703 25.9
Oeu009961.1 Olea europaea HOM05D003962 ORTHO05D004714 6.2e-31 140.6 1032 25.8
EL10Ac3g05299 Beta vulgaris HOM05D003962 ORTHO05D004714 1.4e-30 139.4 654 27.1
arahy.Tifrunner.gnm1.ann1.897SEY Arachis hypogaea HOM05D003962 ORTHO05D004714 2.3e-30 138.7 401 30.9
Migut.A00639 Erythranthe guttata HOM05D003962 ORTHO05D004714 2.3e-30 138.7 686 24.8
arahy.Tifrunner.gnm1.ann1.JYM9I0 Arachis hypogaea HOM05D003962 ORTHO05D004714 3.1e-30 138.3 397 30.5
Lj2A167T45 Lonicera japonica HOM05D003962 ORTHO05D004714 5.2e-30 137.5 1114 24.6
Medtr3g091280 Medicago truncatula HOM05D003962 ORTHO05D004714 5.2e-30 137.5 538 28.8
Lj1g0008504 Lotus japonicus HOM05D003962 ORTHO05D004714 1.2e-29 136.3 581 29.1
Sed0017272 Sechium edule HOM05D003962 ORTHO05D004714 1.2e-29 136.3 598 28.4
Eucgr.A01465 Eucalyptus grandis HOM05D003962 ORTHO05D004714 1.5e-29 136.0 568 28.3
Os01g0655400 Oryza sativa ssp. japonica HOM05D003962 ORTHO05D004714 1.5e-29 136.0 735 26.8
Sc25g0000880 Simmondsia chinensis HOM05D003962 ORTHO05D004714 1.5e-29 136.0 453 29.4
Phvul.009G053600 Phaseolus vulgaris HOM05D003962 ORTHO05D004714 3.4e-29 134.8 560 28.8
Aa31sc139G70 Aethionema arabicum HOM05D003962 ORTHO05D004714 5.8e-29 134.0 583 28.1
Manes.06G159800 Manihot esculenta HOM05D003962 ORTHO05D004714 2.9e-28 131.7 386 29.3
ClCG01G000470 Citrullus lanatus HOM05D003962 ORTHO05D004714 4.9e-28 131.0 597 26.0
Lalb_Chr11g0066791 Lupinus albus HOM05D003962 ORTHO05D004714 5.4e-27 127.5 648 26.9
Oeu063516.1 Olea europaea HOM05D003962 ORTHO05D004714 1.2e-26 126.3 737 24.6
Glyma.06G127600 Glycine max HOM05D003962 ORTHO05D004714 1.6e-26 125.9 653 27.0
Ah.13g070110 Amaranthus hybridus HOM05D003962 ORTHO05D004714 4.6e-26 124.4 617 26.9
ATR0602G039 Amborella trichopoda HOM05D003962 ORTHO05D004714 1.0e-25 123.2 835 26.6
AUR62006109 Chenopodium quinoa HOM05D003962 ORTHO05D004714 1.0e-25 123.2 928 25.2
SGA_v2.0_scaffold96G29015 Striga asiatica HOM05D003962 ORTHO05D004714 1.0e-25 123.2 521 27.4
Rhsim02G0244200 Rhododendron simsii HOM05D003962 ORTHO05D004714 2.3e-25 122.1 680 25.7
TPR.G17287 Trifolium pratense HOM05D003962 ORTHO05D004714 3.0e-25 121.7 581 28.4
MSTRG.13886 Avicennia marina HOM05D003962 ORTHO05D004714 5.1e-25 120.9 614 26.2
Glyma.04G236700 Glycine max HOM05D003962 ORTHO05D004714 5.1e-25 120.9 696 26.9
Zm00001eb158050 Zea mays HOM05D003962 ORTHO05D004714 6.6e-25 120.6 538 27.3
MELO3C005882.2 Cucumis melo HOM05D003962 ORTHO05D004714 1.1e-24 119.8 785 24.5
CsaV3_5G000540 Cucumis sativus L. HOM05D003962 ORTHO05D004714 1.9e-24 119.0 782 24.7
Lalb_Chr08g0240331 Lupinus albus HOM05D003962 ORTHO05D004714 1.9e-24 119.0 653 25.7
PGR042G1008 Punica granatum HOM05D003962 ORTHO05D004714 1.9e-24 119.0 1019 22.8
Nitab4.5_0006775g0080 Nicotiana tabacum HOM05D003962 ORTHO05D004714 4.3e-24 117.9 356 29.2
AUR62019379 Chenopodium quinoa HOM05D003962 ORTHO05D004714 9.6e-24 116.7 929 25.2
Carub.0008s1360 Capsella rubella HOM05D003962 ORTHO05D004714 1.2e-23 116.3 635 26.8
C03p17680 Brassica napus HOM05D003962 ORTHO05D004714 4.7e-23 114.4 622 26.8
Nitab4.5_0001210g0080 Nicotiana tabacum HOM05D003962 ORTHO05D004714 6.2e-23 114.0 380 30.5
BolC3t14179H Brassica oleracea HOM05D003962 ORTHO05D004714 8.1e-23 113.6 622 26.8
Lalb_Chr23g0271551 Lupinus albus HOM05D003962 ORTHO05D004714 8.1e-23 113.6 658 27.2
A03p15150 Brassica napus HOM05D003962 ORTHO05D004714 1.4e-22 112.8 619 27.0
AL8G28140 Arabidopsis lyrata HOM05D003962 ORTHO05D004714 3.1e-22 111.7 611 26.0
BcaC01g06252 Brassica carinata HOM05D003962 ORTHO05D004714 3.1e-22 111.7 624 26.6
Ah.07g205820 Amaranthus hybridus HOM05D003962 ORTHO05D004714 1.5e-21 109.4 650 26.9
BraA03t10810Z Brassica rapa HOM05D003962 ORTHO05D004714 2.0e-21 109.0 618 27.0
Ca_16697_v3 Cicer arietinum L. HOM05D003962 ORTHO05D004714 2.6e-21 108.6 950 25.5
AT5G53440 Arabidopsis thaliana HOM05D003962 ORTHO05D004714 3.4e-21 108.2 636 25.2
Thhalv10012484m.g Eutrema salsugineum HOM05D003962 ORTHO05D004714 4.4e-21 107.8 642 26.6
Oeu058004.1 Olea europaea HOM05D003962 ORTHO05D004714 5.8e-21 107.5 410 25.6
HanXRQChr06g0166431 Helianthus annuus HOM05D003962 ORTHO05D004714 1.3e-20 106.3 670 26.6
CDE02G1812 Ceratophyllum demersum HOM05D003962 ORTHO05D004714 2.2e-20 105.5 1013 24.2
SGA_v2.0_scaffold305G47981 Striga asiatica HOM05D003962 ORTHO05D004714 2.9e-20 105.1 811 23.4
Sed0023111 Sechium edule HOM05D003962 ORTHO05D004714 1.2e-18 99.8 1008 22.9
BcaNung06205 Brassica carinata HOM05D003962 ORTHO05D004714 1.6e-18 99.4 664 26.1
Thhalv10026934m.g Eutrema salsugineum HOM05D003962 ORTHO05D004714 1.6e-18 99.4 742 26.0
Duzib205G1946 Durio zibethinus HOM05D003962 ORTHO05D004714 7.8e-18 97.1 1120 24.0
SHI02385 Sapria himalayana HOM05D003962 ORTHO05D004714 1.0e-17 96.7 428 26.2
CARHR266560 Cardamine hirsuta HOM05D003962 ORTHO05D004714 1.3e-17 96.3 647 25.7
VMungo1309G1284 Vigna mungo HOM05D003962 ORTHO05D004714 3.0e-17 95.1 1112 23.5
DCAR_006489 Daucus carota HOM05D003962 ORTHO05D004714 1.9e-16 92.4 779 23.5
CDE09G1087 Ceratophyllum demersum HOM05D003962 ORTHO05D004714 2.5e-16 92.0 1013 22.9
Prupe.5G120600 Prunus persica HOM05D003962 ORTHO05D004714 6.9e-14 84.0 555 24.3
unitig_0.g2842 Utricularia gibba HOM05D003962 ORTHO05D004714 6.9e-14 84.0 139 36.0
Oeu054025.1 Olea europaea HOM05D003962 ORTHO05D004714 1.5e-13 82.8 1006 21.7
Sc19g0000840 Simmondsia chinensis HOM05D003962 ORTHO05D004714 3.4e-13 81.6 1101 25.0
HPP92_024026 Vanilla planifolia HOM05D003962 ORTHO05D004714 2.2e-12 79.0 1029 22.8
ATR1089G043 Amborella trichopoda HOM05D003962 ORTHO05D004714 1.1e-11 76.6 352 28.7
HanXRQChr17g0534811 Helianthus annuus HOM05D003962 ORTHO05D004714 1.9e-11 75.9 1101 24.1
unitig_88.g27642 Utricularia gibba HOM05D003962 ORTHO05D004714 2.1e-10 72.4 548 25.7
ECA233G2741 Erigeron canadensis HOM05D003962 ORTHO05D004714 3.0e-09 68.6 493 24.7
Sp6g15570 Schrenkiella parvula HOM05D003962 ORTHO05D004714 2.5e-08 65.5 1084 23.0
SEGI_41344 Sequoiadendron giganteum HOM05D003962 ORTHO05D004714 7.3e-08 63.9 250 29.2
Lsat_1_v5_gn_3_10880 Lactuca sativa HOM05D003962 ORTHO05D004714 2.8e-07 62.0 1079 22.3
ECA246G1296 Erigeron canadensis HOM05D003962 ORTHO05D004714 3.6e-07 61.6 1172 21.2
THA.LOC104825141 Tarenaya hassleriana HOM05D003962 ORTHO05D004714 6.2e-07 60.8 953 22.2
Psat5g078120 Pisum sativum HOM05D003962 ORTHO05D004714 1.4e-06 59.7 953 22.4


User provided reference genes

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