Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE10G0903 Ceratophyllum demersum HOM05D003733 ORTHO05D004035 2.1e-273 945.3 553 100.0
CDE10G0649 Ceratophyllum demersum HOM05D003733 ORTHO05D004035 1.3e-190 670.2 533 78.6
Cfa006814 Carpinus fangiana HOM05D003733 ORTHO05D004035 1.9e-56 224.6 502 39.2
CiPaw.12G004300 Carya illinoinensis HOM05D003733 ORTHO05D004035 2.4e-54 217.6 509 36.9
TAR376G0930 Trochodendron aralioides HOM05D003733 ORTHO05D004035 5.3e-54 216.5 466 39.7
GSVIVG01003708001 Vitis vinifera HOM05D003733 ORTHO05D004035 1.5e-53 214.9 516 39.5
Nn1g05776 Nelumbo nucifera HOM05D003733 ORTHO05D004035 1.7e-52 211.5 506 37.9
QL06p037705 Quercus lobata HOM05D003733 ORTHO05D004035 2.2e-52 211.1 477 37.9
TAR381G0096 Trochodendron aralioides HOM05D003733 ORTHO05D004035 6.4e-52 209.5 486 38.1
TWI53G0148 Tripterygium wilfordii HOM05D003733 ORTHO05D004035 2.3e-49 201.1 468 37.6
Actinidia36390 Actinidia chinensis HOM05D003733 ORTHO05D004035 1.9e-48 198.0 510 37.1
vmacro07413 Vaccinium macrocarpon HOM05D003733 ORTHO05D004035 5.6e-48 196.4 515 35.9
CSS0008611 Camellia sinensis var. sinensis HOM05D003733 ORTHO05D004035 1.8e-46 191.4 526 35.4
Dinv26992 Davidia involucrata HOM05D003733 ORTHO05D004035 1.1e-43 182.2 471 36.1
Rhsim10G0187300 Rhododendron simsii HOM05D006560 ORTHO05D008164 1.1e-43 182.2 444 35.8
Migut.L00442 Erythranthe guttata HOM05D003733 ORTHO05D004035 3.5e-42 177.2 502 38.8
Actinidia11935 Actinidia chinensis HOM05D003733 ORTHO05D004035 4.6e-42 176.8 512 35.5
MSTRG.3501 Avicennia marina HOM05D003733 ORTHO05D004035 3.9e-41 173.7 494 35.6
Haze_03945 Corylus avellana HOM05D003733 ORTHO05D004035 5.1e-41 173.3 509 34.4
ClCG01G018090 Citrullus lanatus HOM05D003733 ORTHO05D008786 1.6e-39 168.3 468 33.5
TAR625G0952 Trochodendron aralioides HOM05D003733 ORTHO05D004035 4.8e-39 166.8 471 34.8
CAN.G1061.16 Capsicum annuum HOM05D003733 ORTHO05D004035 8.1e-39 166.0 480 34.6
PGR102G0988 Punica granatum HOM05D003733 ORTHO05D004035 3.1e-38 164.1 483 32.9
Nitab4.5_0000396g0250 Nicotiana tabacum HOM05D003733 ORTHO05D004035 6.9e-38 162.9 468 34.6
Cc07_g07720 Coffea canephora HOM05D003733 ORTHO05D004035 1.2e-37 162.2 511 32.9
MELO3C007686.2 Cucumis melo HOM05D003733 ORTHO05D004035 4.5e-37 160.2 505 31.3
CsaV3_6G044630 Cucumis sativus L. HOM05D003733 ORTHO05D004035 5.8e-37 159.8 521 31.1
vmacro20437 Vaccinium macrocarpon HOM05D003733 ORTHO05D004035 5.8e-37 159.8 470 34.3
PGSC0003DMG400030618 Solanum tuberosum HOM05D003733 ORTHO05D004035 1.0e-36 159.1 508 34.4
ATR0584G133 Amborella trichopoda HOM05D003733 ORTHO05D004035 2.9e-36 157.5 461 32.3
Ciclev10025536m.g Citrus clementina HOM05D003733 ORTHO05D004035 8.4e-36 156.0 532 35.2
PSO832G4530 Papaver somniferum HOM05D003733 ORTHO05D004035 1.1e-35 155.6 474 32.3
RcHm_v2.0_Chr2g0109681 Rosa chinensis HOM05D003733 ORTHO05D004035 1.1e-35 155.6 507 34.1
SalBow7G4044 Salvia bowleyana HOM05D003733 ORTHO05D004035 4.2e-35 153.7 516 31.0
Lj4A174T33 Lonicera japonica HOM05D003733 ORTHO05D004035 7.1e-35 152.9 497 32.6
Psat2g135720 Pisum sativum HOM05D003733 ORTHO05D004035 9.3e-35 152.5 439 31.7
Atru.chr3.1125_Atru.chr3.1126 Acer truncatum HOM05D003733 ORTHO05D004035 2.1e-34 151.4 476 33.8
Atru.chr3.1134_Atru.chr3.1135 Acer truncatum HOM05D003733 ORTHO05D004035 2.1e-34 151.4 476 33.8
Medtr5g030610 Medicago truncatula HOM05D003733 ORTHO05D004035 3.5e-34 150.6 483 33.1
Medtr5g430710 Medicago truncatula HOM05D003733 ORTHO05D008786 3.5e-34 150.6 483 33.1
MD02G1269400 Malus domestica HOM05D003733 ORTHO05D004035 4.6e-34 150.2 504 33.3
TPR.G1045 Trifolium pratense HOM05D003733 ORTHO05D008786 1.3e-33 148.7 483 33.1
Sed0009716 Sechium edule HOM05D003733 ORTHO05D004035 2.3e-33 147.9 512 31.6
Glyma.08G272800 Glycine max HOM05D003733 ORTHO05D004035 5.1e-33 146.7 482 38.0
Lj2g0016248 Lotus japonicus HOM05D003733 ORTHO05D004035 1.9e-32 144.8 470 39.6
Aqoxy4G03244 Aquilegia oxysepala HOM05D003733 ORTHO05D004035 3.3e-32 144.1 446 31.4
Nitab4.5_0000465g0130 Nicotiana tabacum HOM05D003733 ORTHO05D004035 3.3e-32 144.1 473 32.1
Prupe.6G211200 Prunus persica HOM05D003733 ORTHO05D004035 3.3e-32 144.1 529 30.6
Sopen02g036340 Solanum pennellii HOM05D003733 ORTHO05D004035 3.3e-32 144.1 488 33.2
HanXRQChr17g0561681 Helianthus annuus HOM05D003733 ORTHO05D004035 1.3e-31 142.1 495 30.7
HPP92_024603 Vanilla planifolia HOM05D003733 ORTHO05D004035 1.3e-31 142.1 459 32.7
Nitab4.5_0014307g0010 Nicotiana tabacum HOM05D003733 ORTHO05D004035 1.6e-31 141.7 470 31.7
Peaxi162Scf00118g00109 Petunia axillaris HOM05D003733 ORTHO05D004035 1.6e-31 141.7 508 36.0
Glyma.01G097200 Glycine max HOM05D003733 ORTHO05D004035 2.1e-31 141.4 465 34.8
FAN23G1272 Fragaria x ananassa HOM05D003733 ORTHO05D004035 4.8e-31 140.2 548 31.6
VMungo1215G3108 Vigna mungo HOM05D003733 ORTHO05D004035 4.8e-31 140.2 482 33.0
Potri.007G009700 Populus trichocarpa HOM05D003733 ORTHO05D004035 1.1e-30 139.0 474 31.4
Manes.12G120000 Manihot esculenta HOM05D003733 ORTHO05D004035 1.4e-30 138.7 281 40.6
ATR0706G065 Amborella trichopoda HOM05D003733 ORTHO05D004035 2.4e-30 137.9 477 30.6
A09p57340 Brassica napus HOM05D003733 ORTHO05D004035 3.1e-30 137.5 557 29.1
CiPaw.12G004100 Carya illinoinensis HOM05D003733 ORTHO05D004035 3.1e-30 137.5 319 38.2
Sabra07G0007400 Salix brachista HOM05D003733 ORTHO05D008786 4.1e-30 137.1 445 31.5
Thecc.01G082000 Theobroma cacao HOM05D003733 ORTHO05D004035 4.1e-30 137.1 523 31.7
Os11g0296800 Oryza sativa ssp. japonica HOM05D003733 ORTHO05D004035 3.4e-29 134.0 521 35.5
Potri.005G148700 Populus trichocarpa HOM05D003733 ORTHO05D004035 3.4e-29 134.0 441 30.8
Phvul.002G139100 Phaseolus vulgaris HOM05D003733 ORTHO05D004035 4.5e-29 133.7 465 34.6
Ca_06073_v3 Cicer arietinum L. HOM05D003733 ORTHO05D004035 5.9e-29 133.3 430 31.6
Sed0014908 Sechium edule HOM05D003733 ORTHO05D004035 7.6e-29 132.9 535 28.8
PSO210G1228 Papaver somniferum HOM05D003733 ORTHO05D004035 1.7e-28 131.7 486 28.2
CAN.G11.21 Capsicum annuum HOM05D003733 ORTHO05D004035 2.2e-28 131.3 521 35.5
FvH4_1g18820 Fragaria vesca HOM05D003733 ORTHO05D004035 3.8e-28 130.6 583 30.2
BcaB06g27818 Brassica carinata HOM05D003733 ORTHO05D004035 5.0e-28 130.2 496 30.8
Lj4g0014652 Lotus japonicus HOM05D003733 ORTHO05D004035 1.9e-27 128.3 449 31.8
PSO782G1301 Papaver somniferum HOM05D003733 ORTHO05D004035 2.5e-27 127.9 452 32.7
SEGI_33741 Sequoiadendron giganteum HOM05D003733 ORTHO05D004035 2.5e-27 127.9 476 30.3
FAN19G3013 Fragaria x ananassa HOM05D003733 ORTHO05D004035 3.2e-27 127.5 584 29.6
C08p40430 Brassica napus HOM05D003733 ORTHO05D004035 1.6e-26 125.2 505 29.1
PSO761G0336 Papaver somniferum HOM05D003733 ORTHO05D004035 7.9e-26 122.9 495 28.1
Sc03g0000640 Simmondsia chinensis HOM05D003733 ORTHO05D004035 7.9e-26 122.9 483 32.9
HanXRQChr12g0366081 Helianthus annuus HOM05D003733 ORTHO05D004035 1.0e-25 122.5 440 29.8
Nitab4.5_0000093g0190 Nicotiana tabacum HOM05D003733 ORTHO05D004035 1.0e-25 122.5 427 33.5
arahy.Tifrunner.gnm1.ann1.DCX0GA Arachis hypogaea HOM05D003733 ORTHO05D004035 2.3e-25 121.3 422 30.1
arahy.Tifrunner.gnm1.ann1.KS8TVJ Arachis hypogaea HOM05D003733 ORTHO05D004035 2.3e-25 121.3 422 30.1
SGA_v2.0_scaffold13G06400 Striga asiatica HOM05D003733 ORTHO05D004035 3.9e-25 120.6 507 33.3
BolC8t51612H Brassica oleracea HOM05D003733 ORTHO05D004035 5.1e-25 120.2 540 28.3
BraA09t41127Z Brassica rapa HOM05D003733 ORTHO05D004035 6.7e-25 119.8 594 30.1
Lj3g0005458 Lotus japonicus HOM05D003733 ORTHO05D004035 1.1e-24 119.0 345 36.2
Manes.13G105200 Manihot esculenta HOM05D003733 ORTHO05D004035 1.1e-24 119.0 339 36.0
MBI16_g41329_MAGBIO Magnolia biondii HOM05D003733 ORTHO05D004035 1.9e-24 118.2 414 31.2
Lalb_Chr16g0381411 Lupinus albus HOM05D003733 ORTHO05D004035 3.3e-24 117.5 468 31.2
AL4G12240 Arabidopsis lyrata HOM05D003733 ORTHO05D004035 5.7e-24 116.7 524 30.0
Lsat_1_v5_gn_8_34760 Lactuca sativa HOM05D003733 ORTHO05D004035 5.7e-24 116.7 464 30.0
DCAR_025843 Daucus carota HOM05D003733 ORTHO05D004035 9.7e-24 115.9 475 30.5
MD16G1281700 Malus domestica HOM05D003733 ORTHO05D004035 9.7e-24 115.9 528 30.3
Oeu054739.1 Olea europaea HOM05D003733 ORTHO05D004035 1.3e-23 115.5 434 32.7
Sopen03g007620 Solanum pennellii HOM05D003733 ORTHO05D004035 4.8e-23 113.6 572 32.9
MBI16_g20893_MAGBIO Magnolia biondii HOM05D003733 ORTHO05D004035 8.2e-23 112.8 243 39.1
THA.LOC104807653 Tarenaya hassleriana HOM05D003733 ORTHO05D004035 8.2e-23 112.8 575 28.3
arahy.Tifrunner.gnm1.ann1.24SHUP Arachis hypogaea HOM05D003733 ORTHO05D004035 1.4e-22 112.1 417 30.9
Eucgr.D00182 Eucalyptus grandis HOM05D003733 ORTHO05D004035 1.8e-22 111.7 489 27.4
VMungo1309G1560 Vigna mungo HOM05D003733 ORTHO05D004035 2.4e-22 111.3 282 34.4
VMungo0251G1204 Vigna mungo HOM05D003733 ORTHO05D004035 3.1e-22 110.9 457 33.0
Solyc03g043760.4 Solanum lycopersicum HOM05D003733 ORTHO05D004035 5.3e-22 110.2 572 32.7
MD01G1046400 Malus domestica HOM05D003733 ORTHO05D004035 6.9e-22 109.8 539 29.3
CANSAT01G3253 Cannabis sativa HOM05D003733 ORTHO05D004035 9.0e-22 109.4 544 33.6
Aa31LG7G14100 Aethionema arabicum HOM05D003733 ORTHO05D004035 1.2e-21 109.0 585 27.7
SalBow5G1957 Salvia bowleyana HOM05D003733 ORTHO05D004035 1.2e-21 109.0 525 31.6
Solyc02g091730.3 Solanum lycopersicum HOM05D003733 ORTHO05D004035 1.2e-21 109.0 298 32.9
arahy.Tifrunner.gnm1.ann1.EGH0HL Arachis hypogaea HOM05D003733 ORTHO05D004035 2.6e-21 107.8 417 31.2
Phvul.003G285300 Phaseolus vulgaris HOM05D003733 ORTHO05D004035 4.5e-21 107.1 569 32.7
CSS0020555 Camellia sinensis var. sinensis HOM05D003733 ORTHO05D004035 5.9e-21 106.7 389 31.1
THA.LOC104804189 Tarenaya hassleriana HOM05D003733 ORTHO05D004035 2.2e-20 104.8 492 29.5
Zm00001eb429410 Zea mays HOM05D003733 ORTHO05D004035 2.9e-20 104.4 545 33.0
AUR62003259 Chenopodium quinoa HOM05D003733 ORTHO05D004035 6.5e-20 103.2 441 26.8
PGSC0003DMG400016686 Solanum tuberosum HOM05D003733 ORTHO05D004035 6.5e-20 103.2 305 33.1
SEGI_29083 Sequoiadendron giganteum HOM05D003733 ORTHO05D004035 8.5e-20 102.8 536 31.5
CARHR246250 Cardamine hirsuta HOM05D003733 ORTHO05D004035 3.2e-19 100.9 453 27.6
CARHR114000 Cardamine hirsuta HOM05D003733 ORTHO05D004035 5.5e-19 100.1 559 28.3
AUR62027209 Chenopodium quinoa HOM05D003733 ORTHO05D004035 7.2e-19 99.8 453 27.4
CSS0006986 Camellia sinensis var. sinensis HOM05D003733 ORTHO05D004035 9.4e-19 99.4 385 30.6
Cpa.g.sc129.28 Carica papaya HOM05D003733 ORTHO05D004035 1.2e-18 99.0 456 30.5
AT2G22720 Arabidopsis thaliana HOM05D003733 ORTHO05D004035 2.1e-18 98.2 574 27.9
SHI12093 Sapria himalayana HOM05D003733 ORTHO05D004035 2.7e-18 97.8 162 40.7
Sc16g0000790 Simmondsia chinensis HOM05D003733 ORTHO05D004035 6.1e-18 96.7 199 37.2
unitig_0.g2606 Utricularia gibba HOM05D003733 ORTHO05D004035 1.0e-17 95.9 512 28.7
Lalb_Chr09g0325721 Lupinus albus HOM05D003733 ORTHO05D004035 1.4e-17 95.5 220 36.8
Oeu054741.2 Olea europaea HOM05D003733 ORTHO05D004035 3.0e-17 94.4 402 27.6
Sp4g01710 Schrenkiella parvula HOM05D003733 ORTHO05D004035 5.1e-17 93.6 515 27.4
A01p01170 Brassica napus HOM05D003733 ORTHO05D004035 6.7e-17 93.2 450 28.2
BraA01t00115Z Brassica rapa HOM05D003733 ORTHO05D004035 8.8e-17 92.8 458 27.7
COL.COLO4_11664 Corchorus olitorius HOM05D000513 ORTHO05D008786 4.4e-16 90.5 490 29.8
AT4G37860 Arabidopsis thaliana HOM05D003733 ORTHO05D004035 5.7e-16 90.1 468 28.4
ECA233G0477 Erigeron canadensis HOM05D003733 ORTHO05D004035 1.7e-15 88.6 502 26.7
CAN.G630.65 Capsicum annuum HOM05D003733 ORTHO05D004035 2.8e-15 87.8 455 28.1
A04p17190 Brassica napus HOM05D002219 ORTHO05D002713 3.7e-15 87.4 547 25.8
Duzib264G0286 Durio zibethinus HOM05D003733 ORTHO05D004035 1.1e-14 85.9 513 27.9
Sp7g35500 Schrenkiella parvula HOM05D003733 ORTHO05D004035 1.1e-14 85.9 408 29.4
BraA04t17347Z Brassica rapa HOM05D003733 ORTHO05D004035 2.4e-14 84.7 562 25.8
EL10As13g24049 Beta vulgaris HOM05D003733 ORTHO05D004035 3.1e-14 84.3 431 27.1
Os02g0664400 Oryza sativa ssp. japonica HOM05D003733 ORTHO05D004035 6.9e-14 83.2 441 33.3
Duzib147G1539 Durio zibethinus HOM05D003733 ORTHO05D004035 9.1e-14 82.8 505 29.5
C01p01330 Brassica napus HOM05D003733 ORTHO05D004035 2.6e-13 81.3 472 27.5
C04p52030 Brassica napus HOM05D002219 ORTHO05D002713 2.6e-13 81.3 575 27.0
BolC4t26775H Brassica oleracea HOM05D003733 ORTHO05D004035 2.6e-13 81.3 574 26.7
Carub.0004s0185 Capsella rubella HOM05D003733 ORTHO05D004035 2.6e-13 81.3 579 28.2
SGA_v2.0_scaffold174G39242 Striga asiatica HOM05D003733 ORTHO05D004035 2.2e-12 78.2 525 25.7
Manes.06G161600 Manihot esculenta HOM05D003733 ORTHO05D004035 5.0e-12 77.0 420 26.9
Thhalv10000080m.g Eutrema salsugineum HOM05D003733 ORTHO05D004035 6.5e-12 76.6 159 36.5
Hma1.2p1_0723F.1_g208790 Hydrangea macrophylla HOM05D003733 ORTHO05D004035 1.4e-11 75.5 270 31.9
Gorai.003G035000 Gossypium raimondii HOM05D003733 ORTHO05D004035 2.5e-11 74.7 555 30.8
Potri.001G257300 Populus trichocarpa HOM05D003733 ORTHO05D004035 3.2e-11 74.3 456 26.3
Aqoxy6G00872 Aquilegia oxysepala HOM05D003733 ORTHO05D004035 9.4e-11 72.8 432 24.3
Mapoly0034s0125 Marchantia polymorpha HOM05D025130 ORTHO05D030134 1.6e-10 72.0 524 23.7
Prupe.2G308100 Prunus persica HOM05D003733 ORTHO05D004035 3.6e-10 70.9 207 35.3
Gohir.A02G147000 Gossypium hirsutum HOM05D003733 ORTHO05D004035 4.7e-10 70.5 537 31.8
Sc16g0000800 Simmondsia chinensis HOM05D003733 ORTHO05D004035 6.1e-10 70.1 124 45.2
BolC1t00129H Brassica oleracea HOM05D003733 ORTHO05D004035 7.9e-10 69.7 466 26.2
BcaNung00967 Brassica carinata HOM05D003733 ORTHO05D004035 2.3e-09 68.2 466 26.2
Gohir.D03G033400 Gossypium hirsutum HOM05D003733 ORTHO05D004035 3.9e-09 67.4 557 30.3
Prupe.1G068500 Prunus persica HOM05D003733 ORTHO05D004035 5.2e-09 67.0 472 27.3
Oeu012608.1 Olea europaea HOM05D003733 ORTHO05D004035 1.1e-08 65.9 63 65.1
Thhalv10026061m.g Eutrema salsugineum HOM05D003733 ORTHO05D004035 2.6e-08 64.7 129 43.4
AL7G12820 Arabidopsis lyrata HOM05D003733 ORTHO05D004035 3.3e-08 64.3 228 27.6
Hund23622 Selenicereus undatus HOM05D003733 ORTHO05D004035 4.4e-08 63.9 496 24.6
MD15G1405500 Malus domestica HOM05D005427 ORTHO05D006461 1.3e-07 62.4 104 42.3
SGA_v2.0_scaffold55G19776 Striga asiatica HOM05D003733 ORTHO05D004035 1.3e-07 62.4 164 32.3
CBR_g55949 Chara braunii HOM05D003733 ORTHO05D004035 4.8e-07 60.5 71 54.9
unitig_88.g27718 Utricularia gibba HOM05D003733 ORTHO05D004035 8.2e-07 59.7 486 24.7
C07p48280 Brassica napus HOM05D009573 ORTHO05D017440 1.1e-06 59.3 89 49.4
BolC3t21046H Brassica oleracea HOM05D009573 ORTHO05D004035 1.1e-06 59.3 85 50.6
BolC6t37033H Brassica oleracea HOM05D009573 ORTHO05D014968 1.1e-06 59.3 85 51.8
BcaB06g26254 Brassica carinata HOM05D009573 ORTHO05D014968 1.4e-06 58.9 55 63.6
BcaC08g44389 Brassica carinata HOM05D009573 ORTHO05D016742 1.4e-06 58.9 92 48.9
BolC6t37222H Brassica oleracea HOM05D009573 ORTHO05D004035 1.8e-06 58.5 85 50.6
C06p24730 Brassica napus HOM05D009573 ORTHO05D014968 2.4e-06 58.2 85 49.4
C03p81970 Brassica napus HOM05D009573 ORTHO05D014968 4.1e-06 57.4 92 45.7
Zm00001eb186830 Zea mays HOM05D003733 ORTHO05D004035 4.1e-06 57.4 265 28.7
COL.COLO4_36255 Corchorus olitorius HOM05D003733 ORTHO05D004035 7.0e-06 56.6 469 25.2
C03p51890 Brassica napus HOM05D009573 ORTHO05D014968 9.1e-06 56.2 63 55.6
BolC5t29034H Brassica oleracea HOM05D009573 ORTHO05D004035 9.1e-06 56.2 93 43.0


User provided reference genes

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