Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE10G0849 Ceratophyllum demersum HOM05D003898 ORTHO05D004642 1.5e-181 639.4 327 100.0
TAR625G0437 Trochodendron aralioides HOM05D003898 ORTHO05D004642 1.3e-124 450.3 321 73.8
Aqoxy2G00480 Aquilegia oxysepala HOM05D003898 ORTHO05D004642 1.2e-119 433.7 322 67.1
QL12p035494 Quercus lobata HOM05D003898 ORTHO05D004642 3.6e-119 432.2 322 68.9
Potri.002G090500 Populus trichocarpa HOM05D003898 ORTHO05D004642 1.0e-118 430.6 323 70.6
Manes.02G157700 Manihot esculenta HOM05D003898 ORTHO05D004642 1.8e-118 429.9 307 71.3
Sc16g0001430 Simmondsia chinensis HOM05D003898 ORTHO05D004642 4.0e-118 428.7 322 69.3
PSO210G6710 Papaver somniferum HOM05D003898 ORTHO05D004642 5.2e-118 428.3 325 68.3
PSO447G0107 Papaver somniferum HOM05D003898 ORTHO05D004642 5.2e-118 428.3 325 68.0
Thecc.08G115200 Theobroma cacao HOM05D003898 ORTHO05D004642 1.2e-117 427.2 312 71.2
CiPaw.06G023700 Carya illinoinensis HOM05D003898 ORTHO05D004642 5.8e-117 424.9 321 68.2
RcHm_v2.0_Chr7g0240421 Rosa chinensis HOM05D003898 ORTHO05D004642 1.3e-116 423.7 314 68.5
Cpa.g.sc49.114 Carica papaya HOM05D003898 ORTHO05D004642 3.7e-116 422.2 326 67.8
GSVIVG01008958001 Vitis vinifera HOM05D003898 ORTHO05D004642 4.9e-116 421.8 322 69.3
Actinidia33168 Actinidia chinensis HOM05D003898 ORTHO05D004642 6.4e-116 421.4 322 69.3
FvH4_5g38420 Fragaria vesca HOM05D003898 ORTHO05D004642 8.3e-116 421.0 317 67.5
Duzib093G1469 Durio zibethinus HOM05D003898 ORTHO05D004642 1.1e-115 420.6 312 70.2
vmacro04776 Vaccinium macrocarpon HOM05D003898 ORTHO05D004642 1.1e-115 420.6 327 67.6
CSS0037064 Camellia sinensis var. sinensis HOM05D003898 ORTHO05D004642 1.4e-115 420.2 323 66.6
CSS0048138 Camellia sinensis var. sinensis HOM05D003898 ORTHO05D004642 1.9e-115 419.9 321 67.0
ECA246G0783 Erigeron canadensis HOM05D003898 ORTHO05D004642 1.9e-115 419.9 329 66.0
Potri.005G170600 Populus trichocarpa HOM05D003898 ORTHO05D004642 3.2e-115 419.1 321 69.2
HanXRQChr05g0162311 Helianthus annuus HOM05D003898 ORTHO05D004642 7.0e-115 417.9 318 68.2
Dinv13069 Davidia involucrata HOM05D003898 ORTHO05D004642 9.2e-115 417.5 333 67.3
RcHm_v2.0_Chr1g0340891 Rosa chinensis HOM05D003898 ORTHO05D004642 1.2e-114 417.2 317 66.9
Gorai.002G220000 Gossypium raimondii HOM05D003898 ORTHO05D004642 1.6e-114 416.8 312 70.8
MSTRG.24959 Avicennia marina HOM05D003898 ORTHO05D004642 2.0e-114 416.4 320 67.2
EL10Ac6g15432 Beta vulgaris HOM05D003898 ORTHO05D004642 2.0e-114 416.4 325 65.2
Gohir.D01G182400 Gossypium hirsutum HOM05D003898 ORTHO05D004642 2.7e-114 416.0 308 71.4
HanXRQChr01g0001161 Helianthus annuus HOM05D003898 ORTHO05D004642 1.0e-113 414.1 318 67.6
COL.COLO4_16517 Corchorus olitorius HOM05D003898 ORTHO05D004642 2.3e-113 412.9 312 69.2
Sabra02G0071500 Salix brachista HOM05D003898 ORTHO05D004642 2.3e-113 412.9 336 66.1
Gohir.A01G187300 Gossypium hirsutum HOM05D003898 ORTHO05D004642 1.1e-112 410.6 308 70.1
MD08G1174000 Malus domestica HOM05D003898 ORTHO05D004642 1.5e-112 410.2 317 67.8
Prupe.1G507900 Prunus persica HOM05D003898 ORTHO05D004642 1.5e-112 410.2 320 66.2
Psat5g107440 Pisum sativum HOM05D003898 ORTHO05D004642 2.5e-112 409.5 322 64.6
SGA_v2.0_scaffold11G05890 Striga asiatica HOM05D003898 ORTHO05D004642 2.5e-112 409.5 320 66.9
Nitab4.5_0000425g0260 Nicotiana tabacum HOM05D003898 ORTHO05D004642 3.3e-112 409.1 321 66.7
Ca_02530_v3 Cicer arietinum L. HOM05D003898 ORTHO05D004642 4.3e-112 408.7 324 64.8
Rhsim07G0198900 Rhododendron simsii HOM05D003898 ORTHO05D004642 5.6e-112 408.3 330 65.2
Ciclev10005436m.g Citrus clementina HOM05D003898 ORTHO05D004642 9.5e-112 407.5 308 70.1
PGR044G1262 Punica granatum HOM05D003898 ORTHO05D004642 9.5e-112 407.5 325 66.2
FvH4_7g08221 Fragaria vesca HOM05D003898 ORTHO05D004642 6.2e-111 404.8 309 66.7
TPR.G26798 Trifolium pratense HOM05D003898 ORTHO05D004642 6.2e-111 404.8 321 64.5
AUR62019012 Chenopodium quinoa HOM05D003898 ORTHO05D004642 1.1e-110 404.1 321 65.1
CANSAT25G0948 Cannabis sativa HOM05D003898 ORTHO05D004642 1.8e-110 403.3 324 65.1
Carub.0001s1201 Capsella rubella HOM05D003898 ORTHO05D004642 1.8e-110 403.3 309 66.0
Medtr4g112080 Medicago truncatula HOM05D003898 ORTHO05D004642 1.8e-110 403.3 324 64.2
Lsat_1_v5_gn_9_70200 Lactuca sativa HOM05D003898 ORTHO05D004642 2.3e-110 402.9 304 67.1
CiPaw.05G230800 Carya illinoinensis HOM05D003898 ORTHO05D004642 3.1e-110 402.5 321 65.1
ClCG08G010840 Citrullus lanatus HOM05D003898 ORTHO05D004642 4.0e-110 402.1 329 62.3
Sopen12g029520 Solanum pennellii HOM05D003898 ORTHO05D004642 4.0e-110 402.1 316 66.1
THA.LOC104813137 Tarenaya hassleriana HOM05D003898 ORTHO05D004642 4.0e-110 402.1 311 66.9
DCAR_028260 Daucus carota HOM05D003898 ORTHO05D004642 5.2e-110 401.7 317 65.6
VMungo1309G1855 Vigna mungo HOM05D003898 ORTHO05D004642 6.8e-110 401.4 321 62.6
TAR381G1034 Trochodendron aralioides HOM05D003898 ORTHO05D004642 1.5e-109 400.2 271 76.4
AUR62027853 Chenopodium quinoa HOM05D003898 ORTHO05D004642 2.0e-109 399.8 325 64.6
Solyc12g056840.2 Solanum lycopersicum HOM05D003898 ORTHO05D004642 2.6e-109 399.4 316 65.8
Sp6g40350 Schrenkiella parvula HOM05D003898 ORTHO05D004642 3.4e-109 399.1 308 66.9
Sed0026073 Sechium edule HOM05D003898 ORTHO05D004642 3.4e-109 399.1 313 64.2
Phvul.009G026700 Phaseolus vulgaris HOM05D003898 ORTHO05D004642 4.4e-109 398.7 321 63.6
PGSC0003DMG401016958 Solanum tuberosum HOM05D003898 ORTHO05D004642 4.4e-109 398.7 316 66.1
Peaxi162Scf00160g01643 Petunia axillaris HOM05D003898 ORTHO05D004642 1.3e-108 397.1 321 65.4
CARHR012640 Cardamine hirsuta HOM05D003898 ORTHO05D004642 1.7e-108 396.7 308 67.2
TWI12G0005 Tripterygium wilfordii HOM05D003898 ORTHO05D004642 2.2e-108 396.4 320 64.7
MELO3C011378.2 Cucumis melo HOM05D003898 ORTHO05D004642 2.9e-108 396.0 328 61.6
Lalb_Chr11g0065591 Lupinus albus HOM05D003898 ORTHO05D004642 3.7e-108 395.6 321 63.6
CsaV3_6G035700 Cucumis sativus L. HOM05D003898 ORTHO05D004642 4.9e-108 395.2 328 62.2
A10p33510 Brassica napus HOM05D003898 ORTHO05D004642 6.4e-108 394.8 308 66.2
Migut.C00215 Erythranthe guttata HOM05D003898 ORTHO05D004642 1.1e-107 394.0 304 66.4
Thhalv10014147m.g Eutrema salsugineum HOM05D003898 ORTHO05D004642 1.1e-107 394.0 309 65.7
FAN13G1941 Fragaria x ananassa HOM05D003898 ORTHO05D004642 3.2e-107 392.5 344 61.9
Lj4C109T16 Lonicera japonica HOM05D003898 ORTHO05D004642 3.2e-107 392.5 349 61.3
CAN.G47.19 Capsicum annuum HOM05D003898 ORTHO05D004642 5.4e-107 391.7 343 61.2
Lj1g0002951 Lotus japonicus HOM05D003898 ORTHO05D004642 9.2e-107 391.0 322 63.7
BraA02t04709Z Brassica rapa HOM05D003898 ORTHO05D004642 1.6e-106 390.2 317 65.0
Lalb_Chr08g0241771 Lupinus albus HOM05D003898 ORTHO05D004642 3.5e-106 389.0 324 62.7
BcaNung04450 Brassica carinata HOM05D003898 ORTHO05D004642 4.6e-106 388.7 308 64.9
C09p74420 Brassica napus HOM05D003898 ORTHO05D004642 4.6e-106 388.7 308 65.3
Sopen04g028670 Solanum pennellii HOM05D003898 ORTHO05D004642 4.6e-106 388.7 322 60.6
FAN08G2468 Fragaria x ananassa HOM05D003898 ORTHO05D004642 7.8e-106 387.9 338 61.2
Haze_00543 Corylus avellana HOM05D003898 ORTHO05D004642 1.3e-105 387.1 347 61.7
Aa31LG9G14440 Aethionema arabicum HOM05D003898 ORTHO05D004642 1.7e-105 386.7 290 67.9
C02p00370 Brassica napus HOM05D003898 ORTHO05D004642 1.7e-105 386.7 310 64.5
Glyma.04G254600 Glycine max HOM05D003898 ORTHO05D004642 6.6e-105 384.8 322 62.7
BolC9t60175H Brassica oleracea HOM05D003898 ORTHO05D004642 8.6e-105 384.4 308 64.6
BcaNung06026 Brassica carinata HOM05D003898 ORTHO05D004642 1.1e-104 384.0 310 63.9
Glyma.06G107500 Glycine max HOM05D003898 ORTHO05D004642 1.1e-104 384.0 319 62.1
Lsat_1_v5_gn_6_68860 Lactuca sativa HOM05D003898 ORTHO05D004642 2.5e-104 382.9 270 71.5
TPR.G32957 Trifolium pratense HOM05D003898 ORTHO05D004642 4.3e-104 382.1 321 62.3
Cfa015947 Carpinus fangiana HOM05D003898 ORTHO05D004642 7.3e-104 381.3 278 71.2
CAN.G617.2 Capsicum annuum HOM05D003898 ORTHO05D004642 1.6e-103 380.2 326 59.5
BraA10t45381Z Brassica rapa HOM05D003898 ORTHO05D004642 2.1e-103 379.8 334 61.1
AT1G12350 Arabidopsis thaliana HOM05D003898 ORTHO05D004642 2.8e-103 379.4 309 64.7
Os08g0176100 Oryza sativa ssp. japonica HOM05D003898 ORTHO05D004642 3.1e-102 375.9 307 60.6
Medtr3g073550 Medicago truncatula HOM05D003898 ORTHO05D004642 5.2e-102 375.2 321 60.7
Nitab4.5_0006745g0040 Nicotiana tabacum HOM05D003898 ORTHO05D004642 6.8e-102 374.8 389 55.5
SEGI_30417 Sequoiadendron giganteum HOM05D003898 ORTHO05D004642 1.7e-100 370.2 306 61.8
AL1G23670 Arabidopsis lyrata HOM05D003898 ORTHO05D004642 6.4e-100 368.2 309 62.5
arahy.Tifrunner.gnm1.ann1.K1QIEY Arachis hypogaea HOM05D003898 ORTHO05D004642 8.3e-100 367.9 366 56.0
Cc10_g06070 Coffea canephora HOM05D003898 ORTHO05D004642 8.3e-100 367.9 273 67.4
CANSAT01G0632 Cannabis sativa HOM05D003898 ORTHO05D004642 1.9e-99 366.7 328 61.3
HPP92_006004 Vanilla planifolia HOM05D003898 ORTHO05D004642 4.1e-99 365.5 328 57.0
Zm00001eb182920 Zea mays HOM05D003898 ORTHO05D004642 7.1e-99 364.8 307 58.6
Solyc04g072480.3 Solanum lycopersicum HOM05D003898 ORTHO05D004642 2.1e-98 363.2 352 55.1
Oeu038191.1 Olea europaea HOM05D003898 ORTHO05D004642 3.5e-98 362.5 307 62.5
arahy.Tifrunner.gnm1.ann1.PF76WK Arachis hypogaea HOM05D003898 ORTHO05D004642 3.0e-97 359.4 273 67.0
arahy.Tifrunner.gnm1.ann1.HG05DD Arachis hypogaea HOM05D003898 ORTHO05D004642 5.1e-97 358.6 275 65.8
Os02g0575200 Oryza sativa ssp. japonica HOM05D003898 ORTHO05D004642 8.6e-97 357.8 301 60.1
FAN01G1002 Fragaria x ananassa HOM05D000001 ORTHO05D000003 2.8e-95 352.8 318 60.4
Zm00001eb414730 Zea mays HOM05D003898 ORTHO05D004642 8.1e-95 351.3 307 59.0
arahy.Tifrunner.gnm1.ann1.Z23D3B Arachis hypogaea HOM05D003898 ORTHO05D004642 1.4e-94 350.5 282 64.9
Nn1g05207 Nelumbo nucifera HOM05D003898 ORTHO05D004642 4.4e-93 345.5 247 69.6
RcHm_v2.0_Chr1g0340911 Rosa chinensis HOM05D003898 ORTHO05D004642 4.4e-93 345.5 262 66.8
Nitab4.5_0001307g0170 Nicotiana tabacum HOM05D003898 ORTHO05D004642 2.2e-92 343.2 323 57.9
Pp3c11_3000 Physcomitrium patens HOM05D003898 ORTHO05D004642 2.4e-91 339.7 301 54.2
FvH4_5g38402 Fragaria vesca HOM05D003898 ORTHO05D004642 4.2e-91 339.0 249 66.7
CSS0031031 Camellia sinensis var. sinensis HOM05D003898 ORTHO05D004642 5.4e-91 338.6 319 56.7
SalBow7G2097 Salvia bowleyana HOM05D003898 ORTHO05D004642 3.5e-90 335.9 324 58.3
Mapoly0004s0284 Marchantia polymorpha HOM05D003898 ORTHO05D004642 4.8e-87 325.5 305 54.1
Solyc10g011840.3 Solanum lycopersicum HOM05D003898 ORTHO05D004642 3.1e-86 322.8 318 55.7
ATR0564G227 Amborella trichopoda HOM05D003898 ORTHO05D004642 4.4e-85 318.9 235 68.1
CDE10G0276 Ceratophyllum demersum HOM05D003898 ORTHO05D004642 1.9e-83 313.5 163 94.5
Duzib116G0208 Durio zibethinus HOM05D003898 ORTHO05D004642 4.8e-79 298.9 312 54.8
FAN06G3434 Fragaria x ananassa HOM05D000001 ORTHO05D000003 3.1e-78 296.2 317 53.0
MD15G1360400 Malus domestica HOM05D003898 ORTHO05D004642 1.3e-76 290.8 226 67.3
AL6G11300 Arabidopsis lyrata HOM05D003898 ORTHO05D004642 5.6e-72 275.4 199 69.8
ClCG08G002640 Citrullus lanatus HOM05D003898 ORTHO05D004642 6.2e-71 271.9 461 41.2
SMO137G0130 Selaginella moellendorffii HOM05D003898 ORTHO05D004642 1.1e-70 271.2 307 49.5
SalBow1G7967 Salvia bowleyana HOM05D003898 ORTHO05D004642 6.9e-70 268.5 307 50.5
AT5G02080 Arabidopsis thaliana HOM05D003898 ORTHO05D004642 2.1e-58 230.3 185 64.3
PGSC0003DMG400027542 Solanum tuberosum HOM05D003898 ORTHO05D004642 2.1e-58 230.3 184 65.8
SMO137G0020 Selaginella moellendorffii HOM05D003898 ORTHO05D004642 4.6e-58 229.2 267 49.8
PRCOL_00003493 Prasinoderma coloniale HOM05D003898 ORTHO05D004642 1.1e-56 224.6 357 39.5
Atru.chr13.1300 Acer truncatum HOM05D003898 ORTHO05D004642 1.5e-56 224.2 169 69.8
FAN04G1035 Fragaria x ananassa HOM05D003898 ORTHO05D004642 1.5e-56 224.2 212 58.5
Dinv44720 Davidia involucrata HOM05D003898 ORTHO05D004642 1.4e-54 217.6 180 63.3
AagrBONN_evm.TU.Sc2ySwM_344.1574 Anthoceros agrestis HOM05D003898 ORTHO05D004642 9.0e-54 214.9 198 52.5
BolC2t06037H Brassica oleracea HOM05D003898 ORTHO05D004642 9.0e-54 214.9 172 64.5
Cre01.g048050 Chlamydomonas reinhardtii HOM05D003898 ORTHO05D004642 7.7e-53 211.8 262 47.3
Sopen10g005660 Solanum pennellii HOM05D003898 ORTHO05D004642 2.9e-52 209.9 221 51.1
Psat4g046560 Pisum sativum HOM05D003898 ORTHO05D011365 6.5e-52 208.8 170 64.7
DCAR_027594 Daucus carota HOM05D003898 ORTHO05D004642 9.4e-51 204.9 212 56.6
Nitab4.5_0000553g0060 Nicotiana tabacum HOM05D003898 ORTHO05D004642 9.4e-51 204.9 248 48.8
MCO09G707 Micromonas commoda HOM05D003898 ORTHO05D004642 2.7e-50 203.4 284 42.3
Eucgr.F04382 Eucalyptus grandis HOM05D003898 ORTHO05D004642 1.7e-47 194.1 146 69.9
Atru.chr13.1301 Acer truncatum HOM05D003898 ORTHO05D004642 5.3e-46 189.1 139 66.2
SMO137G0337 Selaginella moellendorffii HOM05D003898 ORTHO05D004642 9.1e-46 188.3 226 46.5
Ca_25770_v3 Cicer arietinum L. HOM05D003898 ORTHO05D004642 2.9e-44 183.3 161 61.5
Lj4C710T9 Lonicera japonica HOM05D003898 ORTHO05D004642 2.9e-44 183.3 140 71.4
SEGI_10597 Sequoiadendron giganteum HOM05D003898 ORTHO05D004642 3.8e-44 183.0 148 64.9
FAN18G1940 Fragaria x ananassa HOM05D003898 ORTHO05D004642 6.5e-44 182.2 193 53.9
Cfa024377 Carpinus fangiana HOM05D003898 ORTHO05D004642 7.2e-43 178.7 310 39.7
unitig_32.g11143 Utricularia gibba HOM05D003898 ORTHO05D004642 7.2e-43 178.7 132 72.7
Atru.chr4.493 Acer truncatum HOM05D003898 ORTHO05D004642 8.8e-41 171.8 128 65.6
Atru.chr1.2069 Acer truncatum HOM05D003898 ORTHO05D004642 1.1e-38 164.9 117 68.4
CBR_g9000 Chara braunii HOM05D003898 ORTHO05D004642 1.5e-37 161.0 170 44.1
arahy.Tifrunner.gnm1.ann1.Z5SK82 Arachis hypogaea HOM05D003898 ORTHO05D004642 1.1e-30 138.3 184 45.7
Duzib041G0680 Durio zibethinus HOM05D003898 ORTHO05D004642 5.3e-30 136.0 106 68.9
CBR_g9001 Chara braunii HOM05D003898 ORTHO05D004642 4.2e-27 126.3 111 59.5
Aqoxy480s002 Aquilegia oxysepala HOM05D003898 ORTHO05D004642 8.0e-26 122.1 129 51.2
arahy.Tifrunner.gnm1.ann1.N7W281 Arachis hypogaea HOM05D003898 ORTHO05D004642 2.3e-25 120.6 145 49.0
unitig_32.g11144 Utricularia gibba HOM05D003898 ORTHO05D004642 1.8e-22 110.9 84 65.5
arahy.Tifrunner.gnm1.ann1.9J7JQ6 Arachis hypogaea HOM05D003898 ORTHO05D004642 1.2e-18 98.2 57 78.9
Ah.05g170600 Amaranthus hybridus HOM05D003898 ORTHO05D004642 2.2e-15 87.4 89 52.8
QL10p044069 Quercus lobata HOM05D003898 ORTHO05D004642 1.2e-13 81.6 77 58.4
arahy.Tifrunner.gnm1.ann1.KW4E90 Arachis hypogaea HOM05D003898 ORTHO05D004642 1.7e-12 77.8 49 71.4
QL02p062685 Quercus lobata HOM05D003898 ORTHO05D004642 2.9e-12 77.0 77 57.1
Peaxi162Scf00756g00110 Petunia axillaris HOM05D003898 ORTHO05D004642 9.5e-11 72.0 93 43.0
Aqoxy5G01116 Aquilegia oxysepala HOM05D003898 ORTHO05D004642 6.1e-10 69.3 44 77.3
Atru.chr5.2810 Acer truncatum HOM05D003898 ORTHO05D004642 3.4e-08 63.5 56 58.9
QL10p009819 Quercus lobata HOM05D003898 ORTHO05D004642 1.7e-07 61.2 62 56.5
QL08p011560 Quercus lobata HOM05D003898 ORTHO05D004642 3.2e-06 57.0 62 56.5


User provided reference genes

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