Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE10G0833 Ceratophyllum demersum HOM05D001026 ORTHO05D023993 1.2e-40 169.5 89 100.0
FAN08G3634 Fragaria x ananassa HOM05D001026 ORTHO05D005232 6.1e-29 130.6 81 76.5
FvH4_5g36450 Fragaria vesca HOM05D001026 ORTHO05D005232 1.8e-28 129.0 81 75.3
FAN13G1430 Fragaria x ananassa HOM05D001026 ORTHO05D005232 1.8e-28 129.0 81 75.3
FAN18G1967 Fragaria x ananassa HOM05D001026 ORTHO05D005232 1.8e-28 129.0 81 75.3
FAN04G2218 Fragaria x ananassa HOM05D001026 ORTHO05D005232 6.7e-28 127.1 81 74.1
MD08G1188800 Malus domestica HOM05D001026 ORTHO05D005232 6.7e-28 127.1 81 72.8
RcHm_v2.0_Chr7g0238491 Rosa chinensis HOM05D001026 ORTHO05D005232 6.7e-28 127.1 83 73.5
CiPaw.15G045700 Carya illinoinensis HOM05D001026 ORTHO05D005232 2.0e-27 125.6 79 75.9
Nn7g37838 Nelumbo nucifera HOM05D001026 ORTHO05D005232 2.6e-27 125.2 83 74.7
Prupe.1G523400 Prunus persica HOM05D001026 ORTHO05D005232 2.6e-27 125.2 81 75.3
Medtr3g080120 Medicago truncatula HOM05D001026 ORTHO05D005232 3.3e-27 124.8 80 75.0
Potri.002G100800 Populus trichocarpa HOM05D001026 ORTHO05D005232 3.3e-27 124.8 79 74.7
Haze_18258 Corylus avellana HOM05D001026 ORTHO05D005232 4.4e-27 124.4 78 76.9
QL02p002343 Quercus lobata HOM05D001026 ORTHO05D005232 5.7e-27 124.0 80 75.0
TAR381G1087 Trochodendron aralioides HOM05D001026 ORTHO05D005232 5.7e-27 124.0 81 74.1
Ciclev10000130m.g Citrus clementina HOM05D001026 ORTHO05D005232 7.5e-27 123.6 80 76.2
Lj6g0009212 Lotus japonicus HOM05D001026 ORTHO05D005232 7.5e-27 123.6 83 74.7
Glyma.20G056500 Glycine max HOM05D001026 ORTHO05D005232 1.3e-26 122.9 80 73.8
TWI56G0493 Tripterygium wilfordii HOM05D001026 ORTHO05D005232 1.3e-26 122.9 86 69.8
Dinv07074 Davidia involucrata HOM05D001026 ORTHO05D005232 1.7e-26 122.5 79 75.9
MD15G1376700 Malus domestica HOM05D001026 ORTHO05D005232 1.7e-26 122.5 81 71.6
CsaV3_3G047720 Cucumis sativus L. HOM05D001026 ORTHO05D005232 2.2e-26 122.1 80 73.8
Dinv05859 Davidia involucrata HOM05D001026 ORTHO05D005232 4.8e-26 120.9 79 74.7
Glyma.13G027300 Glycine max HOM05D001026 ORTHO05D005232 4.8e-26 120.9 80 72.5
Phvul.L003337 Phaseolus vulgaris HOM05D001026 ORTHO05D005232 6.3e-26 120.6 80 72.5
Psat5g110840 Pisum sativum HOM05D001026 ORTHO05D005232 8.3e-26 120.2 80 71.2
Gohir.A03G045800 Gossypium hirsutum HOM05D001026 ORTHO05D005232 1.4e-25 119.4 79 72.2
Thecc.08G101700 Theobroma cacao HOM05D001026 ORTHO05D005232 1.4e-25 119.4 79 70.9
GSVIVG01009085001 Vitis vinifera HOM05D001026 ORTHO05D005232 1.8e-25 119.0 79 73.4
CSS0035277 Camellia sinensis var. sinensis HOM05D001026 ORTHO05D005232 2.4e-25 118.6 82 72.0
Manes.02G148900 Manihot esculenta HOM05D001026 ORTHO05D005232 2.4e-25 118.6 79 74.7
Sabra02G0079000 Salix brachista HOM05D001026 ORTHO05D005232 2.4e-25 118.6 79 72.2
CANSAT64G2709 Cannabis sativa HOM05D001026 ORTHO05D005232 3.1e-25 118.2 83 71.1
COL.COLO4_12005 Corchorus olitorius HOM05D001026 ORTHO05D005232 3.1e-25 118.2 79 70.9
Duzib041G0801 Durio zibethinus HOM05D001026 ORTHO05D005232 4.1e-25 117.9 79 69.6
Gohir.D03G121400 Gossypium hirsutum HOM05D001026 ORTHO05D005232 4.1e-25 117.9 79 70.9
Gorai.003G128400 Gossypium raimondii HOM05D001026 ORTHO05D005232 4.1e-25 117.9 79 70.9
Aqoxy6G00082 Aquilegia oxysepala HOM05D001026 ORTHO05D005232 5.3e-25 117.5 80 72.5
vmacro21290 Vaccinium macrocarpon HOM05D001026 ORTHO05D005232 5.3e-25 117.5 81 69.1
Atru.chr13.1116 Acer truncatum HOM05D001026 ORTHO05D005232 7.0e-25 117.1 80 70.0
Rhsim06G0077700 Rhododendron simsii HOM05D001026 ORTHO05D005232 9.1e-25 116.7 81 70.4
THA.LOC104816596 Tarenaya hassleriana HOM05D001026 ORTHO05D005232 9.1e-25 116.7 80 67.5
PSO447G0261 Papaver somniferum HOM05D001026 ORTHO05D005232 1.2e-24 116.3 82 73.2
HPP92_016948 Vanilla planifolia HOM05D001026 ORTHO05D005232 1.2e-24 116.3 81 67.9
PSO700G0312 Papaver somniferum HOM05D001026 ORTHO05D005232 1.6e-24 115.9 82 73.2
AUR62027815 Chenopodium quinoa HOM05D001026 ORTHO05D005232 2.0e-24 115.5 80 68.8
MELO3C003550.2 Cucumis melo HOM05D001026 ORTHO05D005232 2.0e-24 115.5 80 70.0
Manes.18G063378 Manihot esculenta HOM05D001026 ORTHO05D005232 2.0e-24 115.5 81 69.1
Lalb_Chr18g0048141 Lupinus albus HOM05D001026 ORTHO05D005232 4.5e-24 114.4 80 70.0
Carub.0001s3287 Capsella rubella HOM05D001026 ORTHO05D005232 5.9e-24 114.0 80 66.2
AUR62018974 Chenopodium quinoa HOM05D001026 ORTHO05D005232 5.9e-24 114.0 82 67.1
Eucgr.B00041 Eucalyptus grandis HOM05D001026 ORTHO05D005232 5.9e-24 114.0 79 69.6
MBI06_g22313_MAGBIO Magnolia biondii HOM05D001026 ORTHO05D005232 7.7e-24 113.6 81 72.8
TPR.G34506 Trifolium pratense HOM05D001026 ORTHO05D005232 7.7e-24 113.6 82 69.5
AT1G35220 Arabidopsis thaliana HOM05D001026 ORTHO05D005232 1.0e-23 113.2 80 66.2
Sed0011558 Sechium edule HOM05D001026 ORTHO05D005232 1.0e-23 113.2 80 70.0
Ca_16276_v3 Cicer arietinum L. HOM05D001026 ORTHO05D005232 1.3e-23 112.8 80 68.8
Sopen04g029690 Solanum pennellii HOM05D001026 ORTHO05D005232 1.3e-23 112.8 78 66.7
VMungo0540G1065 Vigna mungo HOM05D001026 ORTHO05D005232 1.3e-23 112.8 80 67.5
AL1G49940 Arabidopsis lyrata HOM05D001026 ORTHO05D005232 2.2e-23 112.1 80 65.0
CAN.G1173.1 Capsicum annuum HOM05D001026 ORTHO05D005232 2.2e-23 112.1 78 66.7
Hma1.2p1_0593F.1_g185750 Hydrangea macrophylla HOM05D001026 ORTHO05D005232 2.2e-23 112.1 79 70.9
Oeu029742.2 Olea europaea HOM05D001026 ORTHO05D005232 2.2e-23 112.1 79 67.1
Peaxi162Scf00030g02517 Petunia axillaris HOM05D001026 ORTHO05D005232 2.9e-23 111.7 85 62.4
Peaxi162Scf00571g00528 Petunia axillaris HOM05D001026 ORTHO05D005232 2.9e-23 111.7 80 65.0
Sed0018981 Sechium edule HOM05D001026 ORTHO05D005232 2.9e-23 111.7 79 70.9
ATR0684G075 Amborella trichopoda HOM05D001026 ORTHO05D005232 3.8e-23 111.3 83 72.3
Sc01g0000810 Simmondsia chinensis HOM05D001026 ORTHO05D005232 3.8e-23 111.3 80 73.8
CARHR286320 Cardamine hirsuta HOM05D001026 ORTHO05D005232 5.0e-23 110.9 80 65.0
Hund26991 Selenicereus undatus HOM05D001026 ORTHO05D005232 5.0e-23 110.9 80 68.8
Solyc04g074720.3 Solanum lycopersicum HOM05D001026 ORTHO05D005232 5.0e-23 110.9 78 65.4
Lj4C96G17 Lonicera japonica HOM05D001026 ORTHO05D005232 8.5e-23 110.2 80 70.0
Gohir.A06G033300 Gossypium hirsutum HOM05D001026 ORTHO05D005232 1.1e-22 109.8 79 64.6
Ah.05g169670 Amaranthus hybridus HOM05D001026 ORTHO05D005232 1.5e-22 109.4 82 65.9
Sp1g25380 Schrenkiella parvula HOM05D001026 ORTHO05D005232 1.5e-22 109.4 78 65.4
EL10Ac1g01144 Beta vulgaris HOM05D001026 ORTHO05D005232 1.9e-22 109.0 83 65.1
Aa31LG6G8880 Aethionema arabicum HOM05D001026 ORTHO05D005232 2.5e-22 108.6 81 65.4
Gohir.D06G034200 Gossypium hirsutum HOM05D001026 ORTHO05D005232 3.2e-22 108.2 79 64.6
Gorai.010G037700 Gossypium raimondii HOM05D001026 ORTHO05D005232 3.2e-22 108.2 79 64.6
SalBow7G3028 Salvia bowleyana HOM05D001026 ORTHO05D005232 3.2e-22 108.2 80 66.2
Os05g0355133 Oryza sativa ssp. japonica HOM05D001026 ORTHO05D005232 4.2e-22 107.8 82 64.6
Thhalv10006673m.g Eutrema salsugineum HOM05D001026 ORTHO05D005232 7.2e-22 107.1 78 64.1
SGA_v2.0_scaffold74G24568 Striga asiatica HOM05D001026 ORTHO05D005232 9.4e-22 106.7 80 62.5
Cc10_g06660 Coffea canephora HOM05D001026 ORTHO05D005232 2.7e-21 105.1 79 67.1
DCAR_009580 Daucus carota HOM05D001026 ORTHO05D005232 3.6e-21 104.8 85 62.4
arahy.Tifrunner.gnm1.ann1.Z84UIM Arachis hypogaea HOM05D001026 ORTHO05D005232 1.0e-20 103.2 79 63.3
BcaB03g13886 Brassica carinata HOM05D001026 ORTHO05D005232 1.4e-20 102.8 71 67.6
A07p10680 Brassica napus HOM05D001026 ORTHO05D005232 1.4e-20 102.8 71 67.6
BolC7t42122H Brassica oleracea HOM05D001026 ORTHO05D005232 1.4e-20 102.8 71 67.6
BraA07t28862Z Brassica rapa HOM05D001026 ORTHO05D005232 1.4e-20 102.8 71 67.6
BcaC06g35430 Brassica carinata HOM05D001026 ORTHO05D005232 1.8e-20 102.4 71 67.6
C07p16280 Brassica napus HOM05D001026 ORTHO05D005232 1.8e-20 102.4 71 67.6
Glyma.02G270100 Glycine max HOM05D001026 ORTHO05D005232 1.8e-20 102.4 78 62.8
Zm00001eb286080 Zea mays HOM05D001026 ORTHO05D005232 5.2e-20 100.9 82 61.0
Zm00001eb288650 Zea mays HOM05D001026 ORTHO05D005232 5.2e-20 100.9 82 61.0
arahy.Tifrunner.gnm1.ann1.1274C3 Arachis hypogaea HOM05D001026 ORTHO05D005232 8.8e-20 100.1 79 62.0
BcaC05g26968 Brassica carinata HOM05D001026 ORTHO05D023993 1.5e-19 99.4 76 63.2
C05p28240 Brassica napus HOM05D001026 ORTHO05D023993 1.5e-19 99.4 76 63.2
BolC5t31548H Brassica oleracea HOM05D001026 ORTHO05D023993 1.5e-19 99.4 76 63.2
Lalb_Chr17g0347341 Lupinus albus HOM05D001026 ORTHO05D005232 2.0e-19 99.0 79 62.0
MSTRG.24986 Avicennia marina HOM05D001026 ORTHO05D005232 2.6e-19 98.6 80 62.5
Migut.C00225 Erythranthe guttata HOM05D001026 ORTHO05D005232 5.7e-19 97.4 79 60.8
HanXRQChr12g0379801 Helianthus annuus HOM05D001026 ORTHO05D005232 5.7e-19 97.4 81 61.7
Phvul.008G211900 Phaseolus vulgaris HOM05D001026 ORTHO05D005232 7.5e-19 97.1 80 61.2
Hund16887 Selenicereus undatus HOM05D001026 ORTHO05D005232 2.8e-18 95.1 80 58.8
LjContig00564g0017936 Lotus japonicus HOM05D001026 ORTHO05D005232 6.3e-18 94.0 80 58.8
Ca_06108_v3 Cicer arietinum L. HOM05D001026 ORTHO05D005232 8.3e-18 93.6 79 59.5
Lsat_1_v5_gn_1_3061 Lactuca sativa HOM05D001026 ORTHO05D005232 1.1e-17 93.2 79 57.0
unitig_46.g17923 Utricularia gibba HOM05D001026 ORTHO05D005232 1.8e-17 92.4 82 57.3
Psat2g022120 Pisum sativum HOM05D001026 ORTHO05D005232 2.4e-17 92.0 80 57.5
TPR.G14449 Trifolium pratense HOM05D001026 ORTHO05D005232 2.4e-17 92.0 80 58.8
ECA247G3686 Erigeron canadensis HOM05D001026 ORTHO05D005232 3.1e-17 91.7 79 60.8
Zm00001eb130190 Zea mays HOM05D001026 ORTHO05D005232 4.1e-17 91.3 80 60.0
PGSC0003DMG400017755 Solanum tuberosum HOM05D001026 ORTHO05D005232 5.4e-17 90.9 78 59.0
VMungo0647G2280 Vigna mungo HOM05D001026 ORTHO05D005232 5.4e-17 90.9 82 56.1
Solyc12g057130.3 Solanum lycopersicum HOM05D001026 ORTHO05D005232 9.1e-17 90.1 78 57.7
Sopen12g029790 Solanum pennellii HOM05D001026 ORTHO05D005232 1.2e-16 89.7 78 57.7
arahy.Tifrunner.gnm1.ann1.SJ0MJA Arachis hypogaea HOM05D001026 ORTHO05D005232 1.6e-16 89.4 53 81.1
Medtr5g085880 Medicago truncatula HOM05D001026 ORTHO05D005232 1.6e-16 89.4 80 55.0
Lsat_1_v5_gn_9_73921 Lactuca sativa HOM05D001026 ORTHO05D005232 5.9e-16 87.4 82 56.1
HanXRQChr09g0248911 Helianthus annuus HOM05D001026 ORTHO05D005232 7.7e-16 87.0 82 58.5
Os01g0303200 Oryza sativa ssp. japonica HOM05D001026 ORTHO05D005232 7.7e-16 87.0 82 58.5
arahy.Tifrunner.gnm1.ann1.H5V4Y1 Arachis hypogaea HOM05D001026 ORTHO05D005232 1.3e-15 86.3 67 70.1
Actinidia30796 Actinidia chinensis HOM05D001026 ORTHO05D005232 1.5e-14 82.8 57 66.7
Nitab4.5_0005108g0010 Nicotiana tabacum HOM05D001026 ORTHO05D005232 5.5e-14 80.9 57 59.6
Nitab4.5_0000786g0020 Nicotiana tabacum HOM05D001026 ORTHO05D005232 4.0e-12 74.7 57 59.6
BcaB07g32536 Brassica carinata HOM05D001026 ORTHO05D023993 7.5e-11 70.5 81 49.4
Mapoly0104s0038 Marchantia polymorpha HOM05D001026 ORTHO05D005232 1.4e-09 66.2 80 48.8
AagrBONN_evm.TU.Sc2ySwM_228.1520 Anthoceros agrestis HOM05D001026 ORTHO05D005232 1.8e-09 65.9 83 49.4
CBR_g5699 Chara braunii HOM05D001026 ORTHO05D005232 2.7e-08 62.0 49 59.2
Pp3c2_15510 Physcomitrium patens HOM05D001026 ORTHO05D005232 8.6e-07 57.0 81 38.3
ClCG11G014330 Citrullus lanatus HOM05D001026 ORTHO05D005232 1.9e-06 55.8 43 65.1
Pp3c1_27170 Physcomitrium patens HOM05D001026 ORTHO05D005232 5.6e-06 54.3 51 49.0


User provided reference genes

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