Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE10G0780 Ceratophyllum demersum HOM05D001083 ORTHO05D043890 3.4e-21 104.0 50 100.0
CDE10G0945 Ceratophyllum demersum HOM05D001083 ORTHO05D006562 8.5e-20 99.4 51 98.0
Atru.chr13.1040 Acer truncatum HOM05D001083 ORTHO05D006562 7.2e-19 96.3 48 97.9
Actinidia30816 Actinidia chinensis HOM05D001083 ORTHO05D006562 7.2e-19 96.3 48 97.9
arahy.Tifrunner.gnm1.ann1.4HU4LR Arachis hypogaea HOM05D001083 ORTHO05D006562 7.2e-19 96.3 48 97.9
arahy.Tifrunner.gnm1.ann1.R1F113 Arachis hypogaea HOM05D001083 ORTHO05D006562 7.2e-19 96.3 48 97.9
EL10Ac1g01079 Beta vulgaris HOM05D001083 ORTHO05D006562 7.2e-19 96.3 48 97.9
CANSAT25G1784 Cannabis sativa HOM05D001083 ORTHO05D006562 7.2e-19 96.3 48 97.9
CAN.G1375.13 Capsicum annuum HOM05D001083 ORTHO05D006562 7.2e-19 96.3 48 97.9
Cfa013696 Carpinus fangiana HOM05D001083 ORTHO05D001637 7.2e-19 96.3 48 97.9
CDE10G0373 Ceratophyllum demersum HOM05D001083 ORTHO05D006562 7.2e-19 96.3 48 97.9
Ca_05403_v3 Cicer arietinum L. HOM05D001083 ORTHO05D006562 7.2e-19 96.3 49 95.9
Ciclev10000603m.g Citrus clementina HOM05D001083 ORTHO05D006562 7.2e-19 96.3 48 97.9
Cc10_g15670 Coffea canephora HOM05D001083 ORTHO05D006562 7.2e-19 96.3 48 97.9
Dinv44842 Davidia involucrata HOM05D001083 ORTHO05D006562 7.2e-19 96.3 48 97.9
Eucgr.F02133 Eucalyptus grandis HOM05D001083 ORTHO05D006562 7.2e-19 96.3 48 97.9
FvH4_5g35680 Fragaria vesca HOM05D001083 ORTHO05D006562 7.2e-19 96.3 48 97.9
FAN04G2240 Fragaria x ananassa HOM05D001083 ORTHO05D006562 7.2e-19 96.3 48 97.9
FAN08G3511 Fragaria x ananassa HOM05D001083 ORTHO05D006562 7.2e-19 96.3 48 97.9
FAN13G1737 Fragaria x ananassa HOM05D001083 ORTHO05D006562 7.2e-19 96.3 48 97.9
FAN18G1491 Fragaria x ananassa HOM05D001083 ORTHO05D006562 7.2e-19 96.3 48 97.9
Glyma.02G212600 Glycine max HOM05D001083 ORTHO05D006562 7.2e-19 96.3 49 95.9
Glyma.04G092400 Glycine max HOM05D001083 ORTHO05D006562 7.2e-19 96.3 48 97.9
LjContig00408g0023356 Lotus japonicus HOM05D001083 ORTHO05D006562 7.2e-19 96.3 49 95.9
MD15G1382200 Malus domestica HOM05D001083 ORTHO05D006562 7.2e-19 96.3 48 97.9
Manes.02G146400 Manihot esculenta HOM05D001083 ORTHO05D006562 7.2e-19 96.3 48 97.9
Manes.18G060600 Manihot esculenta HOM05D001083 ORTHO05D006562 7.2e-19 96.3 48 97.9
Medtr5g065880 Medicago truncatula HOM05D001083 ORTHO05D006562 7.2e-19 96.3 48 97.9
Nn5g29925 Nelumbo nucifera HOM05D001083 ORTHO05D001637 7.2e-19 96.3 48 97.9
Os08g0478800 Oryza sativa ssp. japonica HOM05D001083 ORTHO05D006562 7.2e-19 96.3 48 97.9
Phvul.008G180200 Phaseolus vulgaris HOM05D001083 ORTHO05D006562 7.2e-19 96.3 49 95.9
Phvul.009G143550 Phaseolus vulgaris HOM05D001083 ORTHO05D006562 7.2e-19 96.3 48 97.9
Psat2g066440 Pisum sativum HOM05D001083 ORTHO05D006562 7.2e-19 96.3 48 97.9
Potri.002G104000 Populus trichocarpa HOM05D001083 ORTHO05D006562 7.2e-19 96.3 48 97.9
PGR031G0272 Punica granatum HOM05D001083 ORTHO05D006562 7.2e-19 96.3 48 97.9
RcHm_v2.0_Chr7g0237251 Rosa chinensis HOM05D001083 ORTHO05D006562 7.2e-19 96.3 48 97.9
RcHm_v2.0_Chr7g0237281 Rosa chinensis HOM05D001083 ORTHO05D043890 7.2e-19 96.3 48 97.9
RcHm_v2.0_Chr7g0237311 Rosa chinensis HOM05D001083 ORTHO05D006562 7.2e-19 96.3 48 97.9
RcHm_v2.0_Chr7g0237321 Rosa chinensis HOM05D001083 ORTHO05D006562 7.2e-19 96.3 48 97.9
Sabra02G0081500 Salix brachista HOM05D001083 ORTHO05D006562 7.2e-19 96.3 48 97.9
Sed0003733 Sechium edule HOM05D001083 ORTHO05D006562 7.2e-19 96.3 48 97.9
Hund16868 Selenicereus undatus HOM05D001083 ORTHO05D006562 7.2e-19 96.3 48 97.9
Solyc04g076090.3 Solanum lycopersicum HOM05D001083 ORTHO05D006562 7.2e-19 96.3 48 97.9
Sopen00g007090 Solanum pennellii HOM05D001083 ORTHO05D006562 7.2e-19 96.3 48 97.9
TPR.G28355 Trifolium pratense HOM05D001083 ORTHO05D006562 7.2e-19 96.3 48 97.9
TWI12G0831 Tripterygium wilfordii HOM05D001083 ORTHO05D006562 7.2e-19 96.3 48 97.9
TWI36G0898 Tripterygium wilfordii HOM05D001083 ORTHO05D006562 7.2e-19 96.3 48 97.9
TAR381G1629 Trochodendron aralioides HOM05D001083 ORTHO05D006562 7.2e-19 96.3 48 97.9
TAR625G0337 Trochodendron aralioides HOM05D001083 ORTHO05D006562 7.2e-19 96.3 48 97.9
VMungo0647G1287 Vigna mungo HOM05D001083 ORTHO05D006562 7.2e-19 96.3 49 95.9
VMungo1309G2048 Vigna mungo HOM05D001083 ORTHO05D006562 7.2e-19 96.3 48 97.9
GSVIVG01009147001 Vitis vinifera HOM05D001083 ORTHO05D006562 7.2e-19 96.3 48 97.9
Zm00001eb101090 Zea mays HOM05D001083 ORTHO05D006562 7.2e-19 96.3 48 97.9
Zm00001eb315420 Zea mays HOM05D001083 ORTHO05D006562 7.2e-19 96.3 48 97.9
ClCG08G011800 Citrullus lanatus HOM05D001083 ORTHO05D006562 9.4e-19 95.9 48 95.8
MELO3C011104.2 Cucumis melo HOM05D001083 ORTHO05D006562 9.4e-19 95.9 48 95.8
CsaV3_2G030420 Cucumis sativus L. HOM05D001083 ORTHO05D006562 9.4e-19 95.9 48 95.8
Os09g0465600 Oryza sativa ssp. japonica HOM05D001083 ORTHO05D006562 9.4e-19 95.9 48 95.8
Lalb_Chr08g0242431 Lupinus albus HOM05D001083 ORTHO05D006562 1.2e-18 95.5 48 95.8
HPP92_024674 Vanilla planifolia HOM05D001083 ORTHO05D006562 1.2e-18 95.5 48 95.8
CSS0034477 Camellia sinensis var. sinensis HOM05D001083 ORTHO05D006562 1.6e-18 95.1 48 95.8
CSS0045493 Camellia sinensis var. sinensis HOM05D001083 ORTHO05D006562 1.6e-18 95.1 48 95.8
Duzib116G0753 Durio zibethinus HOM05D001083 ORTHO05D006562 1.6e-18 95.1 48 95.8
Glyma.06G094300 Glycine max HOM05D001083 ORTHO05D006562 1.6e-18 95.1 48 95.8
Gohir.A05G220900 Gossypium hirsutum HOM05D001083 ORTHO05D006562 1.6e-18 95.1 48 95.8
Gohir.A06G032624 Gossypium hirsutum HOM05D001083 ORTHO05D006562 1.6e-18 95.1 48 95.8
Gohir.D05G223666 Gossypium hirsutum HOM05D001083 ORTHO05D006562 1.6e-18 95.1 48 95.8
Gohir.D06G032300 Gossypium hirsutum HOM05D001083 ORTHO05D006562 1.6e-18 95.1 48 95.8
Gorai.009G230800 Gossypium raimondii HOM05D001083 ORTHO05D006562 1.6e-18 95.1 48 95.8
Gorai.010G035600 Gossypium raimondii HOM05D001083 ORTHO05D006562 1.6e-18 95.1 48 95.8
Mapoly0057s0092 Marchantia polymorpha HOM05D001083 ORTHO05D006562 1.6e-18 95.1 48 95.8
Nitab4.5_0000131g0420 Nicotiana tabacum HOM05D001083 ORTHO05D006562 1.6e-18 95.1 48 95.8
Nitab4.5_0003300g0010 Nicotiana tabacum HOM05D001083 ORTHO05D006562 1.6e-18 95.1 48 95.8
Oeu016836.1 Olea europaea HOM05D001083 ORTHO05D006562 1.6e-18 95.1 48 95.8
PSO017G5756 Papaver somniferum HOM05D001083 ORTHO05D006562 1.6e-18 95.1 48 95.8
PSO170G6218 Papaver somniferum HOM05D001083 ORTHO05D006562 1.6e-18 95.1 48 95.8
Peaxi162Scf00281g00319 Petunia axillaris HOM05D001083 ORTHO05D006562 1.6e-18 95.1 48 95.8
Pp3c27_3970 Physcomitrium patens HOM05D001083 ORTHO05D006562 1.6e-18 95.1 48 95.8
Rhsim06G0073600 Rhododendron simsii HOM05D001083 ORTHO05D006562 1.6e-18 95.1 49 93.9
PGSC0003DMG400012910 Solanum tuberosum HOM05D001083 ORTHO05D006562 1.6e-18 95.1 48 95.8
Actinidia29614 Actinidia chinensis HOM05D001083 ORTHO05D006562 2.1e-18 94.7 48 95.8
Dinv42631 Davidia involucrata HOM05D001083 ORTHO05D006562 2.1e-18 94.7 48 93.8
Lj1g0024653 Lotus japonicus HOM05D001083 ORTHO05D006562 2.1e-18 94.7 48 95.8
THA.LOC104806836 Tarenaya hassleriana HOM05D001083 ORTHO05D006562 2.1e-18 94.7 48 95.8
CANSAT80G2842 Cannabis sativa HOM05D001083 ORTHO05D006562 3.6e-18 94.0 48 95.8
Cpa.g.sc309.3 Carica papaya HOM05D001083 ORTHO05D006562 3.6e-18 94.0 49 93.9
Duzib041G0775 Durio zibethinus HOM05D001083 ORTHO05D006562 3.6e-18 94.0 48 93.8
Glyma.06G093000 Glycine max HOM05D001083 ORTHO05D006562 3.6e-18 94.0 48 95.8
Lalb_Chr11g0065091 Lupinus albus HOM05D001083 ORTHO05D006562 3.6e-18 94.0 48 95.8
MD08G1194100 Malus domestica HOM05D001083 ORTHO05D006562 3.6e-18 94.0 48 95.8
Prupe.1G528400 Prunus persica HOM05D001083 ORTHO05D006562 3.6e-18 94.0 48 95.8
QL09p017286 Quercus lobata HOM05D001083 ORTHO05D006562 3.6e-18 94.0 48 95.8
CiPaw.07G167500 Carya illinoinensis HOM05D001083 ORTHO05D006562 4.6e-18 93.6 48 93.8
Sc01g0001070 Simmondsia chinensis HOM05D001083 ORTHO05D006562 4.6e-18 93.6 48 95.8
ATR0022G035 Amborella trichopoda HOM05D001083 ORTHO05D006562 6.1e-18 93.2 48 95.8
AUR62019023 Chenopodium quinoa HOM05D001083 ORTHO05D006562 6.1e-18 93.2 48 93.8
AUR62027860 Chenopodium quinoa HOM05D001083 ORTHO05D006562 6.1e-18 93.2 48 93.8
Haze_22337 Corylus avellana HOM05D001083 ORTHO05D006562 6.1e-18 93.2 48 95.8
DCAR_009571 Daucus carota HOM05D001083 ORTHO05D006562 6.1e-18 93.2 48 95.8
ECA232G1336 Erigeron canadensis HOM05D001083 ORTHO05D006562 6.1e-18 93.2 48 95.8
HanXRQChr09g0250891 Helianthus annuus HOM05D001083 ORTHO05D006562 6.1e-18 93.2 48 95.8
Nn1g05517 Nelumbo nucifera HOM05D001083 ORTHO05D006562 6.1e-18 93.2 48 95.8
SEGI_39500 Sequoiadendron giganteum HOM05D001083 ORTHO05D006562 6.1e-18 93.2 48 91.7
unitig_578.g16183 Utricularia gibba HOM05D001083 ORTHO05D006562 6.1e-18 93.2 48 95.8
Aa31LG4G9700 Aethionema arabicum HOM05D001083 ORTHO05D006562 7.9e-18 92.8 48 93.8
Ah.05g170690 Amaranthus hybridus HOM05D001083 ORTHO05D006562 7.9e-18 92.8 48 93.8
Sed0007911 Sechium edule HOM05D001083 ORTHO05D006562 7.9e-18 92.8 48 93.8
Thecc.08G068600 Theobroma cacao HOM05D001083 ORTHO05D006562 7.9e-18 92.8 48 93.8
vmacro21321 Vaccinium macrocarpon HOM05D001083 ORTHO05D006562 7.9e-18 92.8 48 93.8
BcaC06g32870 Brassica carinata HOM05D001083 ORTHO05D006562 1.0e-17 92.4 48 93.8
BcaC09g50847 Brassica carinata HOM05D001083 ORTHO05D006562 1.0e-17 92.4 48 93.8
BcaNung04959 Brassica carinata HOM05D001083 ORTHO05D006562 1.0e-17 92.4 48 93.8
A01p15970 Brassica napus HOM05D001083 ORTHO05D006562 1.0e-17 92.4 48 93.8
A03p55440 Brassica napus HOM05D001083 ORTHO05D006562 1.0e-17 92.4 48 93.8
C01p19950 Brassica napus HOM05D001083 ORTHO05D006562 1.0e-17 92.4 48 93.8
C07p53730 Brassica napus HOM05D001083 ORTHO05D006562 1.0e-17 92.4 48 93.8
BolC1t01923H Brassica oleracea HOM05D001083 ORTHO05D006562 1.0e-17 92.4 48 93.8
BolC7t45864H Brassica oleracea HOM05D001083 ORTHO05D006562 1.0e-17 92.4 48 93.8
BraA01t01531Z Brassica rapa HOM05D001083 ORTHO05D006562 1.0e-17 92.4 48 93.8
BraA03t14618Z Brassica rapa HOM05D001083 ORTHO05D006562 1.0e-17 92.4 48 93.8
Thhalv10024695m.g Eutrema salsugineum HOM05D001083 ORTHO05D006562 1.0e-17 92.4 48 93.8
SalBow2G2226 Salvia bowleyana HOM05D001083 ORTHO05D006562 1.0e-17 92.4 48 93.8
Sp7g22610 Schrenkiella parvula HOM05D001083 ORTHO05D006562 1.0e-17 92.4 48 93.8
Aqoxy5G01325 Aquilegia oxysepala HOM05D001083 ORTHO05D006562 1.4e-17 92.0 48 93.8
AL7G28580 Arabidopsis lyrata HOM05D001083 ORTHO05D006562 1.4e-17 92.0 48 93.8
AT4G24620 Arabidopsis thaliana HOM05D001083 ORTHO05D006562 1.4e-17 92.0 48 93.8
Carub.0007s1644 Capsella rubella HOM05D001083 ORTHO05D006562 1.4e-17 92.0 48 93.8
CARHR232010 Cardamine hirsuta HOM05D001083 ORTHO05D006562 1.4e-17 92.0 48 93.8
Lj4C734G7 Lonicera japonica HOM05D001083 ORTHO05D006562 1.4e-17 92.0 48 93.8
Migut.N02863 Erythranthe guttata HOM05D001083 ORTHO05D006562 2.3e-17 91.3 48 91.7
THA.LOC104800044 Tarenaya hassleriana HOM05D001083 ORTHO05D006562 2.3e-17 91.3 48 93.8
MSTRG.22176 Avicennia marina HOM05D001083 ORTHO05D006562 3.0e-17 90.9 48 93.8
Lsat_1_v5_gn_9_74041 Lactuca sativa HOM05D001083 ORTHO05D006562 3.0e-17 90.9 48 93.8
CSS0030378 Camellia sinensis var. sinensis HOM05D001083 ORTHO05D006562 3.9e-17 90.5 48 93.8
SGA_v2.0_scaffold28G11891 Striga asiatica HOM05D001083 ORTHO05D006562 3.9e-17 90.5 48 93.8
SGA_v2.0_scaffold48G17819 Striga asiatica HOM05D001083 ORTHO05D006562 5.1e-17 90.1 48 93.8
Pp3c16_3900 Physcomitrium patens HOM05D001083 ORTHO05D006562 3.3e-16 87.4 48 87.5
SMO115G0176 Selaginella moellendorffii HOM05D001083 ORTHO05D006562 9.7e-16 85.9 47 89.4
TAR381G0639 Trochodendron aralioides HOM05D001083 ORTHO05D006562 6.9e-14 79.7 39 97.4
SHI06379 Sapria himalayana HOM05D001083 ORTHO05D006562 2.0e-13 78.2 47 85.1
PGSC0003DMG400009848 Solanum tuberosum HOM05D001083 ORTHO05D037767 2.0e-13 78.2 48 81.2


User provided reference genes

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